AMCG00016025


Basic Information

Item Value
gene id AMCG00016025
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 2572569 ~ 2596847 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016025
TTTGATCTTCTTTTCTATGGTCTTTTTTCCTAGACATGCGTAGTCAAGAAGTAAGCATGGCTACCGTTTTATTATTGAATGGCGATACACACGTGTGATCAATTTGGAAAGTAGAAAATATTTGTCTTAACAACCTATCGGCCTGTAAGGTTGACGGAAGTATTGCTGTTGTCAGGAGTCACTGTGAACCAGGATGTTCGCAGAGGAGGAATGGACCGATGGCCCTACAGAGCAGGAACTGACTAAATCTGCCTTGCAGCGACAGGGACTCTCGGATAACAAAACCTTTGTAGCTCAGGGTGTGGGGAAGAAGAGCCTCTTGCGGACACTACAGGCTCTTGGCTCAGTTCCAGACTGGAGTGGCAATGGAGAAGGTGGCTGCAGTGACAGTGAGCCTGAGGAGGCCCCGCTGGCagccaagaaaaagaaaaagagagttCGCAAGCGCCCACTGTCTGACAGGACAGAGAGCAGTTGCACAGGAAAAGGGAAGGGGCCAatggataaaaagaaaaagatagagTCTGGCCACCAAAAGGTGGGCAAGCCGAGAGTACTGGGAGCTGGCCTGGGCAAGGgtggaaatgtaatatttccagTGCCAGTAGAAGGAGAGGCGGGGAAGGAAGAGGGACAGTGCAAACTCAGCCGGCAGCAATGGAGgaacaaaatgaagaacaaaaggAAGAGTAAAAACAAGTTTTGTCCAAACAGGGAAACAAGCCCAGCCAAagcagaggagaaggaggggtcAGAGAGTAAAGAGCACTCCACGACCCCAAGTACAACCCACCCAAAGGTCAAAAGCAGTAAACCAAAGAAGGGGCCTGAAACCATTGGAAGTAAGGAgaagaatgaaacaaacaaagaggaGTTGATTCTGGTTAAAAAAGGCTCAACTTCTAGTAGGGTTGCCATCAAACATGGGTTAAAAGTCAAAGCCTCAGATTCTCAGCTGGCTGAAGATGTAATAAACACCTTGGCACAGGAGGATATCCGAGCCAAGAAAAGGAGGCAGGAGGTGAGAAGACAGCAAGGCAGACTGCAGAGGTTGCGCAGGGTGCTGGAGTCGGACGCCACTTTGGCAGCCAGGGGAAGCTGTgcagaggagaagagagaggagggggaggaggagaagcaAGAGGAGGTGAGCCCCTCCCAGTCTGTGCCTGGGCGCTCGGCAGCCCTGCGAGCACGTATGGAGCTGCGCTTGGAGTCGGCGCGCTTCCGCTACATCAACCAGCAACTCTACACCTCCTCCAGTCTGGAGGCACAGCAGCTGTTCCGTCATGACCGCCAGGCCTTCGAGATCTACCACCGGGGCTTCACTGCCCAGGTGCAGCGCTGGCCCAGTAACCCTGTGGACTCCATCATCAGCTACATCCACAACAAGCCTGCTTCTTTGGTGGTTGCAGATTTTGGCTGTGGAGACTGTAAGATAGCGCTCAGTGTGAGGAACAAAGTGCACTGCTTTGACCTGTCTCCCATCAACAACCTTGTCACTGTCTGTGACATGGCCAATGTCCCTCTTCAAAATGACTCGGTGGATATCGCtgtattctgtctctctctcatgggAACCAATATCAGTGATTTCTTGGTGGAGGCTAACCGCGTGTTGGTAATGAGGGGTGTCCTGAAGATTGCTGAAGTAGCCAGCAGGTTCCAGAATGTTCGAGGGTTCATCAACGCATTGTCCAGTCTGGGATTCAATTTGATGTCAAAGGACACTGAGAACACCTACTTCTACACCTTTGATTTCATGAAGACAGGGGAACCTGAGTGGAACACCAAGAAAGCTGGTCTGGAACTAAAGCCCTGTGTGTACAAGAAGAGGTGAGGACTTGGGAAGATCAATCAATGTGAAACCCAAAGGAGTCTACAGGCTGGCTGAAGACAGCacaccacaaaaataaatggaaaattattaACTACTTCCAAAGCTACCCAGAAATAACAATGCCTCTCTCTGCAACTGCACATACAGCTTCAAATTGCTACTAAACCTACACAATCACCCgtgattttattaatgaaaccatcctgcagtataaatatttgtatttattgaggAATTGACATTTaagcaaaatgcaaattatagaCATTGACAAATTCTAGTAAAGGTTTATTAAAGTCTTACAAAATGTAGTTCaaactaaaattatatatattttaatgtctttgtgtACTATATTATGAAATGTACTACTTATCTAGACTGATAAACTGTCAGCTGTGATTTGAGTGCTGAAGTGTCAGGGAATGCGTTGGTGTTATACCACACCCACCCACCATCTAGTAAGTACATTACCTCATATATGAACTGTTCTCAACAAAGTGAGGcttgttggattggaccacttAGATTAATGTGATATGTGTTATGGAGAGTTGTCTTTTATTATCCTGCCAATACTTAATAGaactatattttataaaggAGTGATAAGGATTATGCTGAATAATACACAgtgttcatttaataaatacttttacttGCATTGACTTGTTTTAAACTATTGAAAGTTCTTCCTCGCctttaaagaaaaggaaatgcttATTATGAATCTGCTCCTACAGAAAATAGAGTTTAGAATTAGAATTTAAAAAGATCAGAACCTTCAGTCAAGCATCACACCCCACTTAAAAGTGAGCAAGACACACAATCAGCAGTAGACTTGGGGTTTGCAAACTTGCATCTTGGATATCATAAAGGTTGGAATATGGTTCCAATGTGGTTTCGCTGCAGAGAGCAATTGCATGGTGATACAAAATCGGAACACGAATAAATCTCTTAATTGACAAACCATTTCCTCTgttagaaatattattattaattaatattattaatattatttagtaTGTAGGATTTGATTCATGGCTGCTTTAACTGttacgtttttattttgttattttgactaACCAACTAAAAACTGAGTTTATGTGTAATAAGTCTAGGTTGTGCTATTAAAAGATACCAGTTTGTTAACATTTGGTCTGAAGCGTGCTCATGATTCGCACTCGCCTCAGTGTACAGAGTATGGGGTCAAGCTTGGCCATCAGGGGGATGTGAGTGATGATGTCGTTGTCCCTCaggctgtctctctctgtggctgtTCCTAGATAGACAGGGCAGTGGTACAGTGGAGTAGAGGAGAGACTGTCTGCCTCTCTGGGGAGCTCTGTCTCAGCCCTGAGCCACACGATGGGCAGCGTGCATGGCTTGGGTGACAGTGTCTCTTGGACAACGCCCAGGCGAGTGTCCCACAATGCGTTGTGCAGCTGCAGGCCTGTGATGTAGGCCCCGCTGTGTGGGGGAGATGATGGATGGAAAGTGCTGCTCATGACCTGTGTAGAGAGGAGAGGTGCtttctcaacacacacacacacacaagtgcagCAGAGATCCCATTAGTCAGCCTAGACCAGTTACTCTAATCAACACACTGGGGAGCACAAATGTAAAGTTCTCGCACCTGCCAGGCAACAATGCACTCTTTACATTCACCAGCcacaatgtgttgttttatattgatatgtacatttatttatttggttccTAGATTTATGAAAGCTTTGATGAAAGTAACTGGTCTGTCTCAATGTTAGGTTTTTGTCAGCTTTTATGTATGTTGGAAACAAATGCCAAATATGTATGTGAAATGTGCCAGCTTCATTTTCcctaatgaaagaaaaagcacaatGTTATAATTTATCTCTATGCAGATGCCCTGATGTAGGGTGTTGATTTGTGAATGAAAACTCAAAATTATTCAGCTGTGGCCAATTCTCTACCATGACTTAAAGGTTTAATAGGTT

Function

GO: NA

KEGG:

id description
K14850 RRP8; ribosomal RNA-processing protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016025 True 3822 mRNA 0.44 8 2572569 2596847

Neighbor

gene id symbol gene type direction distance location
AMCG00016021 NA coding upstream 203089 2171709 ~ 2369480 (+)
AMCG00016015 NA coding upstream 1537347 1009788 ~ 1035222 (+)
AMCG00016017 robo2 coding upstream 1576407 955648 ~ 996162 (+)
AMCG00016016 LOC106613191 coding upstream 1773200 789186 ~ 799369 (+)
AMCG00016014 NA coding upstream 2302649 257227 ~ 269920 (+)
AMCG00016034 NA coding downstream 339108 2935955 ~ 2946364 (+)
AMCG00016031 NA coding downstream 401019 2997866 ~ 2998285 (+)
AMCG00016032 NA coding downstream 401836 2998683 ~ 3054898 (+)
AMCG00016033 NA coding downstream 458161 3055008 ~ 3060444 (+)
AMCG00016036 NA coding downstream 550941 3147788 ~ 3164940 (+)
G10389 NA non-coding upstream 28957 2541724 ~ 2543612 (+)
G10372 NA non-coding upstream 82885 2488761 ~ 2489684 (+)
G10356 NA non-coding upstream 147088 2425085 ~ 2425481 (+)
G10352 NA non-coding upstream 155783 2366631 ~ 2416786 (+)
G10345 NA non-coding upstream 314837 2257313 ~ 2257732 (+)
G10419 LOC101154678 non-coding downstream 113566 2710413 ~ 2710752 (+)
G10421 NA non-coding downstream 117897 2714744 ~ 2716077 (+)
G10423 NA non-coding downstream 120039 2716886 ~ 2717183 (+)
G10431 NA non-coding downstream 139325 2736172 ~ 2736476 (+)
G10479 NA non-coding downstream 439337 3036184 ~ 3036419 (+)
G10371 LOC105010782,LOC106603266 other upstream 84818 2485542 ~ 2487751 (+)
G10350 NA other upstream 259410 2312598 ~ 2313159 (+)
AMCG00016030 NA other downstream 162500 2759347 ~ 2812231 (+)
G10739 foxo1 other downstream 1830299 4427146 ~ 4428059 (+)
AMCG00016079 NA other downstream 4044811 6641658 ~ 6661668 (+)
G10981 cct8,LOC107693911 other downstream 4067239 6664086 ~ 6665548 (+)
AMCG00016091 NA other downstream 4425300 7022147 ~ 7024851 (+)

Expression


Co-expression Network