AMCG00016029


Basic Information

Item Value
gene id AMCG00016029
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 2784125 ~ 2846357 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016029
ATGATGAGGCACGTTCTGAAGTGGCAACCGCTGCAGTCAGCagtgaaacacagagacaggaagTTCCAGGTCCACCAGCCAGGGAAGAGGGACCTTCCTCTAGCTACAGCAACAGGGAAAGACAAGACGGTCCCATGTCTCCTCCACTATCAGGCACCACACAAAGCAGTCTTGACTTATGTTCCAGGAGCTGACCAGGCATCTGTCACAGCACGCACCAACATCCAGCTGGCCCAGGCACAGGTAGAGGACGTGAGGCGGCTGTCTTTGGAAGCTGAGATGAAGCTGGCAGAGGTGAAGGTAGAAGAGATCAAGAGAACTGCAGAATATGCCACATCTGAGAAGGCTGGGGAAGATGTGATTGTGGAGGAAGAAGTCCCTGACGCATACCTACGAGAAGACTAA
>TU12994
NttgcattaatgagaaattgaacaggtgttcctaataatccattagGAGCTGACCAGGCATCTGTCACAGCACGCACCAACATCCAGCTGGCCCAGGCACAGGTAGAGGACGTGAGGCGGCTGTCTTTGGAAGCTGAGATGAAGCTGGCAGAGGTGAAGGTAGAAGAGATCAAGAGAACTGCAGAATATGCCACATCTGAGAAGGCTGGGGAAGATGTGATTGTGGAGGAAGAAGTCCCTGACGCATACCTACGAGAAGACTAAATGCTTGACTTGATGTTACATTTGTTGAAAAAGGTGGTCTGGTTTATGGGGcatcagattttaatttttttcatctcttgacTTACAGCCACTTAATTTCGAACACGAGCAACCACAGCTTAGCTGGTGTGCCTCTTGTTTGAAGAGAGCAAGGTTTGGAATTATCACTTAAAGTGATGGAGAACCTCAAGAGAAAATAAGTTTATCATAATACccaatttttttgtatttatttatttaaactgtctCTTGTGGTGGCACCCAATGTCAATCTATAACATTACTCTCCCTAAGTTACACAGTTGTGCCCAGTGTACCTAAAGCTTATCTCCTTTACTAAGATCTTAAAATTTGACATGacataattaataatgcttttttattgCAAAGCTGGAAGTAAATTCTAAAGGGTTTAATAGAGTTGACCTCACATTGCTGTCTGGGCACACTAGCTATTTATAATTAAGTCACCTGGGGAAGAAGAGTATTCAATTATGCTTGTGAAGTTTcatccataataatacattccaTGGAGAGGATAAAGCTGACTTACACTAGCAGCAGCACTGGTctaatatgtatgtaattttagggtgtaattgtttgtttaattattctaGTAATGATGTATGCAGGGAATGATTTTTGAAATGTTCATAACAGCAATTGCCAAACAATTACATTAGTTAGATGTAGTCTTAGTGTGACAGCTTTTCACTATAAATCAGAGGATGATAATGCTGCAACATATTATCTTTGGTTTTTGGGGTTACAGGAATAAACTATCTAGGTTAAAGGTCGCTTTCGAACACTATCTCCCCTATGAGCATTAAAAAGTGTTACCTGtgaaatcaaatacatacagatcTGTTGGTCATTTCCCCCAGTTTAGTCtagattgtattattgttttaatatataatcttGCAGTTTAAAGTTATTTTGTGGTGGTCTAGTTCAATAAGTTGCATCCATGAATAATATTTCTGatgtctgattttatttttataaatgggTATATTATGAA

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016029 False 405 mRNA 0.53 2 2785152 2793446
TU12994 True 1291 lncRNA 0.37 2 2784125 2846357

Neighbor

gene id symbol gene type direction distance location
AMCG00016028 timm10b coding downstream 68273 2714969 ~ 2715852 (-)
AMCG00016027 NA coding downstream 112416 2606708 ~ 2671709 (-)
AMCG00016026 NA coding downstream 183648 2596014 ~ 2600477 (-)
AMCG00016022 NA coding downstream 256848 2519543 ~ 2527277 (-)
AMCG00016023 NA coding downstream 269045 2463071 ~ 2515080 (-)
AMCG00016041 NA coding upstream 617309 3463666 ~ 3475993 (-)
AMCG00016042 NA coding upstream 651345 3497702 ~ 3502851 (-)
AMCG00016047 NA coding upstream 776561 3622918 ~ 3668558 (-)
AMCG00016045 NA coding upstream 937177 3783534 ~ 3784496 (-)
AMCG00016050 NA coding upstream 976894 3823251 ~ 3835355 (-)
G10440 NA non-coding downstream 16668 2765494 ~ 2767457 (-)
G10435 NA non-coding downstream 34261 2749658 ~ 2749864 (-)
G10432 NA non-coding downstream 47651 2736181 ~ 2736474 (-)
G10415 NA non-coding downstream 81613 2696669 ~ 2702512 (-)
G10357 NA non-coding downstream 358645 2425021 ~ 2425480 (-)
G10464 NA non-coding upstream 26867 2873224 ~ 2963628 (-)
G10474 NA non-coding upstream 131640 2977997 ~ 2978208 (-)
G10483 NA non-coding upstream 194014 3040371 ~ 3047869 (-)
G10486 NA non-coding upstream 238946 3085303 ~ 3085537 (-)
G10529 NA non-coding upstream 434133 3280490 ~ 3281193 (-)
G10420 LOC101154678 other downstream 73440 2710399 ~ 2710685 (-)
AMCG00016024 ilk,LOC106581335 other downstream 229179 2532617 ~ 2554946 (-)
G10478 NA other upstream 188065 3034422 ~ 3035183 (-)
AMCG00016046 NA other upstream 682485 3528842 ~ 3542536 (-)
AMCG00016049 NA other upstream 1039941 3886298 ~ 3920503 (-)
AMCG00016074 NA other upstream 2057499 4903856 ~ 4929900 (-)
AMCG00016110 ufm1,LOC107701138 other upstream 4834554 7680911 ~ 7753437 (-)

Expression


Co-expression Network