AMCG00016030


Basic Information

Item Value
gene id AMCG00016030
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 2759347 ~ 2812231 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016030
ATGGAAGTTATCCAAGGAGGTCAGTCTGACATGaagacagctgtgcaggagTTGCTGGATTTCATGGAGAAATGGAGCCAGCAACAGCAGGAGGACTTGGCCATGCAGCCAGAGGAGGCAAAGCTCTCACCGATGAATGACAAACTGGACAACTGTAAGCGCTTCCAATCAAACTGGATGAACGCGGTCAATCTGTCAGAGCTGGCGGCTGAGGCGGCATATAATGCAGATGTGGCATATTCTGCAGTTCTCTTGATCTCTTCTACCTTCACCTCTGCCAGCTTCATCTCAGCTTCCAAAGACAGCCGCCTCACGTCCTCTACCTGTGCCTGGGCCAGCTGGATGTTGACCCTTGCTAGTTCTGACCCTTCCGCTCTCGCCTGGGTCAACAAAGAGTCTGACCCCAAGGACCAGGGGACAAGCAAAATGGAGCTGAGCACACAAGTCATATTGAAGGCTAAACTGAAAACTTaCAATGCAGCACCAACGTAG
>TU12970
TGAGAGCAAAATGGCGGCGTTCAGAAGGGGTGTTATGTCTATCGGCTTGTTTAGGTGCTCATGGAGTGTGATCATCGCCAGCAGACAGCGGCTCGCAAGGTTTCCCGTGCTGGTGAAAAGTAACTGCTTGTCTTTTGGGGCAGGTGGAGGCCTCTGTGCAGTACCTTTTTCGCAGCATGCAGAGTCTCTCTCTCATGAAACTCTGATCAAGCGGGCCTCTTCCCTTGTAACCGATGGTGCCAACACTTACCTCTCCCAAACCACCCTGGCTCTAGTAGATGCCCTGACACAGTACGCTAAGATGAATGACAAACTGGACAACTGTAAGCGCTTCCAATCAAACTGGATGAACGCGGTCAATCTGTCAGAGCTGGCGGCTGAGGCGGCATATAATGCAGGTA
>TU12971
TGAGAGCAAAATGGCGGCGTTCAGAAGGGGTGTTATGTCTATCGGCTTGTTTAGGTGCTCATGGAGTGTGATCATCGCCAGCAGACAGCGGCTCGCAAGGTTTCCCGTGCTGGTGAAAAGTAACTGCTTGTCTTTTGGGGCAGGTGGAGGCCTCTGTGCAGTACCTTTTTCGCAGCATGCAGAGTCTCTCTCTCATGAAACTCTGATCAAGCGGGCCTCTTCCCTTGTAACCGATGGTGCCAACACTTACCTCTCCCAAACCACCCTGGCTCTAGTAGATGCCCTGACACAGTACGCTAAGgtaaggctgtttttttttttatgaacaccTGATCTATTGATTAGAGGGAAATGAAGGAGGGTGTGTCATTCAGGAACCAATGACATTTTCAGGAATAATAAATTAGTCATGTTATATAAGCAAGGATACTGTTGTAGCATCatttttttcagcatttgttttttaaactgtaatacTGTTCTTGCTCTCTGTagtaagatttaaaaacacaactgatGCAGTAGGTTACTATTTAGATTTTATGTAATTGAGGGTGTCTCAATTAGTGCTGCATAAAACTAT
>TU12972
TGAGAGCAAAATGGCGGCGTTCAGAAGGGGTGTTATGTCTATCGGCTTGTTTAGGTACAGACCATTCTCTTGTGTTCTGCCGCGGATATAATTGCAGGGACCGATAGCCTCAGTATATAATTATAAGTGCAGGACAGTGCTTATGTTTTTAGAAATACTTGTTCACCGAATGTATGTTTCGATTAGTATGTCTTACTAGTAAAAAAGACCAACCAACTTTTAGTTTTAGTGTAGTAAAGTAAAAAGCATTAGTTTTACAGCACAATATGATATTGatataatacattgtgtgttttatgtaatcataaatgtacaattttaatgtattaagaaCTGCAAGTATAGTAAAACAATATAGCTTGCATATCCAGAGAAGAAGATGGagtaatgcattatattttaggTTATGTCAACGTGTGTTAGCTGTTATTCACGCTCTGAAGGGTTGGTGCTCATGGAGTGTGATCATCGCCAGCAGACAGCGGCTCGCAAGGTTTCCCGTGCTGGTGAAAAGTAACTGCTTGTCTTTTGGGGCAGGTGGAGGCCTCTGTGCAGTACCTTTTTCGCAGCATGCAGAGTCTCTCTCTCATGAAACTCTGATCAAGCGGGCCTCTTCCCTTGTAACCGATGGTGCCAACACTTACCTCTCCCAAACCACCCTGGCTCTAGTAGATGCCCTGACACAGTACGCTAAGgtaaggctgtttttttttttatgaacaccTGATCTATTGATTAGAGGGAAATGAAGGAGGGTGTGTCATTCAGGAACCAATGACATTTTCAGGAATAATAAATTAGTCATGTTATATAAGCAAGGATACTGTTGTAGCATCatttttttcagcatttgttttttaaactgtaatacTGTTCTTGCTCTCTGTagtaagatttaaaaacacaactgatGCAGTAGGTTACTATTTAGATTTTATGTAATTGAGGGTGTCTCAATTAGTGCTGCATAAAACTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016030 False 492 mRNA 0.51 5 2769275 2812231
TU12970 False 401 TUCP 0.52 4 2759347 2770670
TU12971 False 583 TUCP 0.38 3 2759347 2761719
TU12972 True 977 TUCP 0.38 3 2759347 2761719

Neighbor

gene id symbol gene type direction distance location
AMCG00016025 NA coding upstream 162500 2572569 ~ 2596847 (+)
AMCG00016021 NA coding upstream 389867 2171709 ~ 2369480 (+)
AMCG00016015 NA coding upstream 1724125 1009788 ~ 1035222 (+)
AMCG00016017 robo2 coding upstream 1763185 955648 ~ 996162 (+)
AMCG00016016 LOC106613191 coding upstream 1959978 789186 ~ 799369 (+)
AMCG00016034 NA coding downstream 123724 2935955 ~ 2946364 (+)
AMCG00016031 NA coding downstream 185635 2997866 ~ 2998285 (+)
AMCG00016032 NA coding downstream 186452 2998683 ~ 3054898 (+)
AMCG00016033 NA coding downstream 242777 3055008 ~ 3060444 (+)
AMCG00016036 NA coding downstream 335557 3147788 ~ 3164940 (+)
G10431 NA non-coding upstream 22871 2736172 ~ 2736476 (+)
G10423 NA non-coding upstream 42164 2716886 ~ 2717183 (+)
G10421 NA non-coding upstream 43270 2714744 ~ 2716077 (+)
G10419 LOC101154678 non-coding upstream 48595 2710413 ~ 2710752 (+)
G10389 NA non-coding upstream 215735 2541724 ~ 2543612 (+)
G10479 NA non-coding downstream 223953 3036184 ~ 3036419 (+)
G10487 NA non-coding downstream 283745 3095976 ~ 3096205 (+)
G10528 NA non-coding downstream 468180 3280411 ~ 3281165 (+)
G10547 NA non-coding downstream 559320 3371551 ~ 3371894 (+)
G10560 NA non-coding downstream 625843 3438074 ~ 3443096 (+)
G10371 LOC105010782,LOC106603266 other upstream 271596 2485542 ~ 2487751 (+)
G10350 NA other upstream 446188 2312598 ~ 2313159 (+)
G10739 foxo1 other downstream 1614915 4427146 ~ 4428059 (+)
AMCG00016079 NA other downstream 3829427 6641658 ~ 6661668 (+)
G10981 cct8,LOC107693911 other downstream 3851855 6664086 ~ 6665548 (+)
AMCG00016091 NA other downstream 4209916 7022147 ~ 7024851 (+)
AMCG00016103 NA other downstream 4457624 7269855 ~ 7302042 (+)

Expression


Co-expression Network