AMCG00016044 (rcbtb2,LOC107699818,LOC107593467,LOC107561474)


Basic Information

Item Value
gene id AMCG00016044
gene name rcbtb2,LOC107699818,LOC107593467,LOC107561474
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 3799589 ~ 3817285 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016044
ATGCACTCAGCGCTCTGCCCTCCGCCTGCAGAGCCAGGAAGCCCGCCGCTGCCAACTGCAGAGCACAGGGACCGATACTGGTGCATGTTGTATATTGCAGGACCccagttttacatttacaatgcaTGGACAGAGAATGCACTATCAAGCCTCCAAGACAAGGTTTTTGGCCTGGGGACTAATTGCAGTGGCTGCTTGGGACTGGGTGATGTTCAGAGCACCATCGAGCCAAGGAGGATAGAGGCCCTGTGTGGGAAGAAGATTGTGTCCCTGAGTTATGGAACAGGGCCTCATGTAGTCATTGCAACTGCAGATGGGGAAGTGTATGCCTGGGGACACAATGGTTACAGCCAGCTTGGGAATGGGACGACAAACCAAGGCCTGACCCCTGCCCAGGTCTCCACCAACCTGCTCAACAAGAAGGTGACCGAGGTGGCTTGCGGCTCCCACCACACCATTGCCCTGACCTCCGAGGGGGAGGTCTATGCCTGGGGCTACAACAACTCTGGCCAGGTGGGCTCCGGCTCCACAGCGAACCAGCCCACCCCGCGGCGGGTCAGCAGCTGCCTGCAGAACAAGGTGGTGGTGAACATCGCCTGTGGACAGCTCTGCTCCATGGCTGTGCTGGACAACGGGGAGGCCTATGGTTGGGGATACAACTGCAATGGACAGCTAGGCCTGGGTAACAATGGGAACCAGCAGACGCCTTGTCGAATAGCCGCGCTGCAGGGAATTAACATTGTGCAGATATCCTGTGGCTATGCCCACACGCTGGCACTGACTGACGAGGGCTTCGTCTACTCCTGGGGTGCCAACTCGTATGGGCAGCTTGGAACTGGCAACAAAAGCAACCAGGCCAGCCCCACACTGATCAATATGGACAAAGAACGGATGGTGGAGGTGGCCGCTTGCCACTCAACGCACACCTCTGCTGCCAAGACCCAGAGCGGGCAGGTGCTGATGTGGGGCCAGTGCCGGGGTCAGGCTGTGGCCAGTCCGCACCTCACGTACTTCCACAGCACTGACGATGTCTTCGCCTGCTTCGCCACGCCCGCAGTCACCTGGCATCTCCTCGCAGTGGAGGGAGATGACTATCTGACGGTTGCCCAGTCACTCAAGAAGGAGTTTGACAGCCCCGAAATATCCGACCTCAAGTTCTTGGTGgatggaaaatgtattcatgttcaCAAAGCCCTTCTGAAAATCAGGTGCGAGCACTTCCGGGCGCTGTTGAATGAGACGGATGACGAGTCCATTGAGATCCACCAGTTCTCCTACCTGGTGTACAGGGCTTTCCTTGAGTACCTCTATACCGACACCATTAGCCTGGCTCCTGAGGACGCCATTGGGCTGCTGGACTTGGCCACGTATTACCGCGAGTCACGGCTCAAGCGCCTGTGCCAGGAGACCATCAAGCGTGGGATCTCCGAGGAGAATGCCATCGCACTGCTCTCTGCTGCTGTCAAGTACGAGGCGCGGGACCTAGAAGAGTTTTGCTTCAAGTTCTGTGTCAATCACATGACTGCAGTGACTCAGACTCAGGCCTTTGCCGACATGGATCACGACCTCCTGAAGAACTTCATCAGCAAAGCCAGCAGGTATGGCGCTTTCAAGAACTGAGACAGAGCCCCGGCCAGCAATGAGATAGACGGCCTGCGCGAGAGAGAGCTGTAACTCAGGGTGGTGAGCAGACAACGGCACCAAAGATTGTTCCTTTCAGAGCTAACCGCAGACCAGAATACACTGCAACAGGCAGTAATCTCAGATACTTCCTAGTCATTGTCCCATCATTTCAACAAGTGTCTAGGCTAATtaataggtaaaaaaaaaaaaaaaaaactcagctcCTGGAGGGCCAGTGTGTCTTCCTCCCCAGCCCTCCAATTCTTAATCTTATTATGTTAAAGGAATGTGTCTCACAGATGTTTTTGTTACTCATCCCTCTTTTAAACCTGAAGTAtaaactttgaaaaacaaaatatgtaaaaatgtaagatTATAGAAACGATTATGGGAAAGGGCACGAGACCAACTCAAATCCTATAGGAACATCCACTCATGTGGATCTTAGTATAGACTGTACTCCGTGTGAGGATGAAACATTAAATCTTTGCACACTTCAACATGTAGTGTTTTGAAGCACCACAAAgctcacatttatttatatatatacatatatacactcacctaaaggattattaggaacacc

Function

symbol description
rcbtb2 Orthologous to human RCBTB2 (RCC1 and BTB domain containing protein 2).

NR:

description
PREDICTED: RCC1 and BTB domain-containing protein 2

GO: NA

KEGG:

id description
K11494 RCBTB; RCC1 and BTB domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016044 True 2209 mRNA 0.52 11 3799589 3817285
Loading

Neighbor

gene id symbol gene type direction distance location
AMCG00016043 NA coding upstream 184066 3606458 ~ 3615523 (+)
AMCG00016040 NA coding upstream 212932 3581680 ~ 3586657 (+)
AMCG00016039 NA coding upstream 313655 3451415 ~ 3485934 (+)
AMCG00016038 NA coding upstream 435561 3340665 ~ 3364028 (+)
AMCG00016035 NA coding upstream 540437 3250687 ~ 3259152 (+)
AMCG00016052 NA coding downstream 25342 3842627 ~ 3854910 (+)
AMCG00016054 NA coding downstream 66075 3883360 ~ 3884302 (+)
AMCG00016051 LOC107671632 coding downstream 131896 3949181 ~ 3966186 (+)
AMCG00016057 cog6,LOC107740391,LOC107561480,LOC107670561 coding downstream 309205 4126490 ~ 4128878 (+)
AMCG00016056 cog6,LOC102796367 coding downstream 343070 4160355 ~ 4188956 (+)
G10584 NA non-coding upstream 279998 3518888 ~ 3519591 (+)
G10560 NA non-coding upstream 356493 3438074 ~ 3443096 (+)
G10547 NA non-coding upstream 427695 3371551 ~ 3371894 (+)
G10528 NA non-coding upstream 518424 3280411 ~ 3281165 (+)
G10487 NA non-coding upstream 703384 3095976 ~ 3096205 (+)
G10654 NA non-coding downstream 83291 3900576 ~ 3901422 (+)
G10695 NA non-coding downstream 160274 3977559 ~ 3979097 (+)
G10707 NA non-coding downstream 392096 4209381 ~ 4209645 (+)
G10732 NA non-coding downstream 518756 4336041 ~ 4336304 (+)
G10736 NA non-coding downstream 554202 4371487 ~ 4373721 (+)
AMCG00016030 NA other upstream 987358 2759347 ~ 2812231 (+)
G10371 LOC105010782,LOC106603266 other upstream 1311838 2485542 ~ 2487751 (+)
G10350 NA other upstream 1486430 2312598 ~ 2313159 (+)
G10739 foxo1 other downstream 609861 4427146 ~ 4428059 (+)
AMCG00016079 NA other downstream 2824373 6641658 ~ 6661668 (+)
G10981 cct8,LOC107693911 other downstream 2846801 6664086 ~ 6665548 (+)
AMCG00016091 NA other downstream 3204862 7022147 ~ 7024851 (+)
AMCG00016103 NA other downstream 3452570 7269855 ~ 7302042 (+)

Expression

AMCG00016044(rcbtb2,LOC107699818,LOC107593467,LOC107561474) Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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AMCG00016044(rcbtb2,LOC107699818,LOC107593467,LOC107561474) Expression in each Bioproject

Bar chart with 7 bars.
AMCG00016044(rcbtb2,LOC107699818,LOC107593467,LOC107561474) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 35.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008252 rcbtb2 coding NC_007126.7 CM002899.2 3125136 ~ 3162586 (+)
grasscarp (Ctenopharyngodon idella) CI01000092_00290289_00332484 RCBTB2 coding CI01000092 null 290289 ~ 332484 (+)