AMCG00016046


Basic Information

Item Value
gene id AMCG00016046
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 3528842 ~ 3542536 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016046
ATGGGAATGTCACTGGCCAAGGCACGGGACCGGTCAGCAAAGGGCATGGAGGCCACGGAAGACAAACCCGTCAAGCCATCGGTGGCAGAGCTAGCAGGGAAGTTCAAAGGTCAACCATTGTCCTGTCCTGCAGGAACTGAAGGGAACAGACCAATACGGAGAAGACCTCCAAACTCCCTTAAACTTAAGGACCCCGGACATGAGGAGAAAACAGCCACCACCTCTTCACATCCTCCCAAGGTGAAGCCCAAGAATTCACCGCTCATTGAAAAACTGCAGGCCAACCTCGCTCTGTCGCCCACCGCCCTGCTGCACTCCCCCAAGAGCCCCGGGATCAAACTGCAGCCCTCTCCCTTTGTCAGCCCCGCCACCACTCCCAGCAGTCCCAGTGTGCGCTTGCACTCCAGTGAGGATGAGACGCCTGCTAGTTTTGAGAAACCAGCGGAGGGCGTTATTCTGCCCAGCATCCAAAAGGGACGGGCACGTGTCTCCATCAAGCGCAGACCACCCACCCGACAGCACAGGAAGTCTGCTTCAGAGGAGCCCACTGGCCAAAGCAGCACACCCGCCAAGGAACACCCCCAGCAGAACGAGGAGGACGATGTTTTTGAGATGCCCAAGGAGCCCGAAGAGTTGTTAAGAGAGGCACAGAGCATTGATGTAGAGAAAACACAGGATGAGCCTGGGCCTAAGGACTTGCAGGAAAAAGAGGAGCTTAAGTCTGAAGAAGGAGCACAGGACAAGACCCAGGAAGCTCCAGCCaaagaaatgaaaagtgaaGCTGTAAAGGAGCCCAGCCAGTATTCTCCACTTGAGCCCCAGGCTTCGGACAGTGTGCCTCAGGGCCCGATAGAAACAGACCCAGAGCAAGCCTGTCCTGACAGGGACGACAGCAATGTCAAACCAGAGGAAGAAACTAGTCCACCAGCAGAGGAAGAGAAGGCCCAGAAAAGCAGTGGAGATGAGAAGGAGCAGACCAAAGCCACTGGAGAGTGACACATCCTCAGAAAAAACCTGTCTAAATCACTGAAGGCTGCATTACCTGCCAACAGCCACCCCCACAAAAGacccaagaaaataaatgagctTGGATACTCAGCCAGTCCTGGTCTCAAGAGAACCACAAGAGTCTTTGATTGTGTCATATTAGTTCAATTTATCCTGGAGAGCTGCTCACTAAGACACAGGTCCCCTATACCACCAGACACAATATTCGATCTGTATGGGTTTCCATAGGGATGACATCAGGAATTAAGTCAGGAAAGAAACAAATTTGTGTAAGAAGTCATCTTCTGTCTTTGGTAACTGTATTAAGCTTTTTAGTATCTCAAGGAAGCAGACTGTTTTGAGGTAACGATTTGTCCTTCAGCAATGCACATGTTACCTtatggagttttttttaatgattttttagTGTTACTTAAAGTTTTAatccaaatttaaaaataagtgatCGTATGTCTAACACTGTAACAGGTTGTCGGAGTTGTGGTGTTGTGACATTGAAAAGAGGCTTGTAATTCTGAGACCTCTCCAGCAGGTGGCagtatgtgtaaaataaatcagtgacAGTAGGGGCAGCTTACTATTCCTACATTGCTACTGCATATCATAAAGACAAAAGGCCTGGattgtaatattttgcaatatttatgcataataaaatattaatagaaCATGTCTGGGAGtttcttacattattattagtattgttgttgtttgtaaagGACTGGCTCAGTGGTTAAACTTAAGGCtaattaaatgttcaattgatgatgacaattataaaaataataggtATATGATAGTGaattattcattatatataaatgtacaatcACCCATACTCAGCACtgtgaaaaaatgaatattaaataaaaacaaccttaTAAAGTCCCAAAATTCAATCAAGTTAACTTTTAAAaggtgtagtgtgtgtagtgtagtgatTTATACCACTTATTTTGCATAACATgccatgtaaaatacatttgaaacacCATCTGAAATTTACAAACAATCtaaaattttatttataaagataCCCCTGAGGAAtgaggaattattattattattattattattatt
>TU13149
gggattttcttttaaacaccTTGAGAAGCTATTCAGGTTAATAGGATTAGTGAGGTCACTTCTACGCAGGTCACTTCCTGTCAGGGGAGAATAGGAGCTGGACCAACAGAATCCAGACTGTGGAGAGTCCAACAGTATGGGCCAAAAGGGctgccgtctctctctctttttcttcgCGCCTGTGCAGGCCAACCTCGCTCTGTCGCCCACCGCCCTGCTGCACTCCCCCAAGAGCCCCGGGATCAAACTGCAGCCCTCTCCCTTTGTCAGCCCCGCCACCACTCCCAGCAGTCCCAGTGTGCGCTTGCACTCCAGTGAGGATGAGACGCCTGCTAGTTTTGAGAAACCAGCGGAGGGCGTTATTCTGCCCAGCATCCAAAAGGAGCAGACCAAAGCCACTGGAGAGTGACACATCCTCAGAAAAAACCTGTCTAAATCACTGAAGGCTGCATTACCTGCCAACAGCCACCCCCACAAAAGacccaagaaaataaatgagctTGGATACTCAGCCAGTCCTGGTCTCAAGAGAACCACAAGAGTCTTTGATTGTGTCATATTAGTTCAATTTATCCTGGAGAGCTGCTCACTAAGACACAGGTCCCCTATACCACCAGACACAATATTCGATCTGTATGGGTTTCCATAGGGATGACATCAGGAATTAAGTCAGGAAAGAAACAAATTTGTGTAAGAAGTCATCTTCTGTCTTTGGTAACTGTATTAAGCTTTTTAGTATCTCAAGGAAGCAGACTGTTTTGAGGTAACGATTTGTCCTTCAGCAATGCACATGTTACCTtatggagttttttttaatgattttttagTGTTACTTAAAGTTTTAatccaaatttaaaaataagtgatCGTATGTCTAACACTGTAACAGGTTGTCGGAGTTGTGGTGTTGTGACATTGAAAAGAGGCTTGTAATTCTGAGACCTCTCCAGCAGGTGGCagtatgtgtaaaataaatcagtgacAGTAGGGGCAGCTTACTATTCCTACATTGCTACTGCATATCATAAAGACAAAAGGCCTGGattgtaatattttgcaatatttatgcataataaaatattaatagaaCA

Function

GO: NA

KEGG:

id description
K18615 RCSD1, CAPZIP; CapZ-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016046 True 2088 mRNA 0.44 7 3528842 3542536
TU13149 False 1091 TUCP 0.44 3 3529252 3539193

Neighbor

gene id symbol gene type direction distance location
AMCG00016042 NA coding downstream 25991 3497702 ~ 3502851 (-)
AMCG00016041 NA coding downstream 52849 3463666 ~ 3475993 (-)
AMCG00016028 timm10b coding downstream 812990 2714969 ~ 2715852 (-)
AMCG00016027 NA coding downstream 857133 2606708 ~ 2671709 (-)
AMCG00016026 NA coding downstream 928365 2596014 ~ 2600477 (-)
AMCG00016047 NA coding upstream 80382 3622918 ~ 3668558 (-)
AMCG00016045 NA coding upstream 240998 3783534 ~ 3784496 (-)
AMCG00016050 NA coding upstream 280715 3823251 ~ 3835355 (-)
AMCG00016048 NA coding upstream 386198 3928734 ~ 3947435 (-)
AMCG00016053 lhfp,LOC105029023,LOC107670626,LOC107740377,LOC107593461 coding upstream 562195 4104731 ~ 4105731 (-)
G10596 NA non-coding downstream 6807 3514439 ~ 3522035 (-)
G10556 NA non-coding downstream 150257 3378378 ~ 3378585 (-)
G10548 NA non-coding downstream 156944 3371541 ~ 3371898 (-)
G10529 NA non-coding downstream 247649 3280490 ~ 3281193 (-)
G10486 NA non-coding downstream 443305 3085303 ~ 3085537 (-)
G10624 NA non-coding upstream 199057 3741593 ~ 3742262 (-)
G10673 NA non-coding upstream 327188 3869724 ~ 3912272 (-)
G10692 NA non-coding upstream 429350 3971886 ~ 3973511 (-)
G10696 NA non-coding upstream 435023 3977559 ~ 3979117 (-)
G10698 NA non-coding upstream 445117 3987653 ~ 3987955 (-)
G10478 NA other downstream 493659 3034422 ~ 3035183 (-)
AMCG00016029 NA other downstream 682485 2784125 ~ 2846357 (-)
G10420 LOC101154678 other downstream 818157 2710399 ~ 2710685 (-)
AMCG00016024 ilk,LOC106581335 other downstream 973896 2532617 ~ 2554946 (-)
AMCG00016049 NA other upstream 343762 3886298 ~ 3920503 (-)
AMCG00016074 NA other upstream 1361320 4903856 ~ 4929900 (-)
AMCG00016110 ufm1,LOC107701138 other upstream 4138375 7680911 ~ 7753437 (-)
AMCG00016119 NA other upstream 4576685 8119221 ~ 8124033 (-)
G11326 NA other upstream 4649010 8191546 ~ 8194432 (-)

Expression


Co-expression Network