AMCG00016048


Basic Information

Item Value
gene id AMCG00016048
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 3928734 ~ 3947435 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016048
GTGCAGGTTGGGACGGTGACGTCACTGGTGTCTGTGGGAGCGGCTGGTTTGAAATGCGAGCACCGAGTCTGATCATAAGCGAAAACAATAAAGTCTTCAGCTTCCAACGACTGGCTTACAGGACACGTCCAACGCTACTGAAAATCAAAGGTGACAGAAGCTTGAAGATTACCTGGCAAGAAGAAAAACTCAACATTTGGGAGTCCCAGTGAAGGCCATGGACTTAAGgaGGAAAGATAATGTCCAGATAAACTCCAATGTCAGCAATAAAACGAGTACCAAGTTGaaaaacaaggaaaatacgAAACCAGGAATCCAACCCAGTGAGCCAGTGTTAACCAAAGCGCCAGTCAAAAAGCAAACCCCATCTACACTTTTACTTCCTGCTGATGGTAAAAAGGGTGTGGTTCTAACAAGTGTGGATGGGAAATGTTCGGAGGGGCAGCAGGCGCCAGCAGGAGTACCAGAAAGGGGCATAAATGTGAAGCGCAGAACTTTAAGTCGCTCTTTCCTCACACACAAGAAATTTGAGCAAAAGAAGCTCATCGTAGAGGCCACCAAGGCTTCCACAAACTTGCCCCATAAACCAGTCCTGGGCTCTTACAAAGGCAAGACTGTACAGTCCAAAATTAGCTCATTTAGGCAACCCATGCACAGAGCTGCTGAATGTGAGGAGCACGGTGATGTGAAAGGCATGGTGCCAAAATCAGTGGGGCACAGACCTGGTGTAAACCCTGTAGTGTCGAGGCCGTCCACTTTGAAGCCTTCTGTGACTCTCCCTGCGAAGCCAGCTGCTGCCCACAGATCAGTGGCACACCGGCTTGCCTCTGCAGGACCCGTTcccaaacaaaaccacagaggAGTTCAGTGCTCTGCAGTCGCTAGCCGACCAGTTGCCAGCAGCACCACTGCCCGAACCATGAGCCACGTTGCCCAGCCGAAGCTCAATCCGGTGTTGAAGAAGAGCGATCCTCCACAGAAAGAGAAGTCCAGGGAGCCTTCCGAGACCTCCAGTGTTAAAGGAGTCAGGGTAGCCATCAGTAGTCAAAGTCAATACAGGGTTTCTAAAGAAACGCAGGAAGAGCGCAGAGCAAAGCTGGCTGAATGGTTGGCATCAAAAGGCAAGACTTTGAAAAGGCCGTCAATGGCACTGTTGGGCCCTCGCACTTTAAAACTGATACCTAAAAAGGAGCCAGAACCCCATGCTCCCCATAACACGACCATGGACCTTGAAGACAACCAAGAGCAGGACCTGCCTGTAGACCCTGTTGCTAAAACGGAAGAAGATGTTATGAATCTGTGTTGTACCCTGGAAACAATGGTGCTGCCTTCGAAGTCTGAGAGTGATGCACCAGGAAAAGGTGAGAATATGGAAATGGACTGTAAGAAAGAAGAGGATGTGAAAGTGGAGAGTGGGACTGAGGGGGAAGACTTGTGCAAGAAGATCCCATCCCTCAACTCAGGGCAGCAAAGCCTCAAGAAAGAGAGCGGCTGGGATCTGGATCAGGAGAGTGATGAGGCTAAAACAAGTAAAGATGACTCTCCTTCAATATCTGTTGCAATCAAATACAGTGTGACGACTACACCATATCTGCAGAGTGTAAAGAAGATGATCCAGGGGGACGGGAGTAAAATTGCCATTAAGGACCTGAAGTTCCTGACCCCGGTGCGGCGTTCCTGTCGGATTCAGAGGCAGTCTGCTCGACTGCCCAACATGCTGGCAGACCATGACCCCTGTGTGACCTCACTGGGTGAACTGGTTTGCCTGGATGGAGATGCCAATGCCTACATCTACAGATCCAACCCTGCCCTGCAGGCTGTGAAGAGCCTGCCCCAGCATGCAGAAAGCCCAGGCAGCTTTAAGCTGGCTGATATATGATGATCCACTGAAAGCACCTTATCATAGATGGGAACAGTGTTATGATTCTGGGGAGTTCCAATCTATAGCCCCTTTCCAACACTAGCACACCAACCCAAGTTATGACTCCTTTTCTGATTATGGTTTTTGTTAGTGTGAAAGCACACACTGGTAACAAGGGGTTCACAATAGCAGCCCACTCTGCCAGCACTGACCTGGGTAAAGCGAGACAAGTCACTGCTCACTGTGTACTTCCTGCAGTGACCCTGGGTCTAAACCACTATAGTGTGAAAATGCATACCCGATCAGCTTGACACTGTCATAACTGGGTAGAGGGTGCTAGATTAAAAGGGGGTTAGCTGGGTTTATTGGTTACCCATAAATCATCAGTTTAAGACTTTTGCAGGGGGTTGgtaaattcagttattttattgataattttGAATAAATGGCTATATACCCTTCTGATCTCAAGGACCAGCTTTCCATGCAATTAACAATAACCTGTCTTCCTTATTTGAAAACTAATAAGGCTGAGGTCACATAAGAAATTGATTTATAGGTGACCTATTAAAATGAAGGGGTCTGTGATTCTCCAGGGCTAGGGTTGGGGTACCATGCTTGACTTTGATTAGTACTTGTCATTCCAGGCAACCGTAGTCTTGATTGTATGGGCATCTCAAATTCACTATTGCCTGGAAGACCAATTGGTTAATTAGCAGATTGGTTTAAACTTTCAAGGATCTATGGCCCTCAAGGTTGTCTATCACTGTTTAAAGCAATATGGACACCAATATCTGAAGCAGTGGAAACATTAGACCTAATCAAGCTACAGTTTCACTGGGGGGCAAGGCTGTAGTTTTCAATTCAACTTAATTTCACTTCTGCAAAGATGGCATGTGTAAATaagaaattgtaatttattagaATACATGAGTTAACCAGAGTGTTTAAGTTTGTGATACAAAACATGCAAGTCTAATGGCACAGTAGAAATATGTGTTTTGGGcaaaatgttgcatttgtgGCAATGTATTGAAATGCAGTCTTTGATGTGAGTGAAGATTGTCTAGTGAGTGTAAAATCCACTTGTGTTCAACTATAGGAAAAGCATTTTACCTTTTAAAGTCATAAAATGCATTCCATCTCATCACTACTACTCAAATATGAGTGATTTCAATCCTGCTTATGGTGGTTGttatactgtaaaatgtatgatcTTTCCAAGATCCAGAAGCGAGGATGTGCATGTTTGGATAACTAATTTAgtagtagttttttttatatgtatattaactCAAGCTTTCAGTTAACACTTAGCATTTCAGGAAATCAATCGCCAGTCTTTAATATCAACATCTGTATAATCACTATATttagtatttacattttgctaCAATGAGACTTCATCTTCCTGTTTTTTGAATTGTACTATGGtagtgtatttcattttgatgaTTTGGACTAGTTTTATTCAGATTTCCATTAGGGTGAATAAAGAGCGTAGTCTAAAATTATTCTCAGTGGTAGAAACGAGCACCTAAATCCATGTATGATTTTTgaataccatttttttttcttctcttaaaTGGTGCTCTCTTCATTCATGGAATGTACAAATATTGTGTAACTGTATTGATCAATACTCTACATCTTTAATTATCCTATAAATTTGCAGATGAGGAAAGCTTTGGTTTTAGACTGTTTTTTAGATTAAGAACACTTTAAATAGTTCATATCTCTGCAGCTGCACTATTGCTGTATGCAAACAATCTGCACCACACTAtctggggttggggggtggtagtgggggaaaaaactattaCGACTATTTTCAAAATTACTGTATTCCAGTTTAATTGGGTGGTACTGTTCACAAGCCGTTAATGAAATTGATCTGTTTTAAGGAGGTCGTTAATAATACTATTTGATACAggagaataaatatttatggactgaATGGAAATAGGTACTTGTATGCCTTTTGTACATGTCCTTAGTTTTTTGTGCAGCTGTATATCAAAACAATTTGTAGcataaacaatgtaaacacCTGCCTATcgttgaaatgtaaaaatatatatatatattcagcttGTTCTAAAAAACATATCtcctgtacattttatatatgtatttaattctacACTAATCTCATCACAAactaattgtaaatatatattaaattcctATTTAAA

Function

GO: NA

KEGG:

id description
K16769 CKAP2; cytoskeleton-associated protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016048 True 4056 mRNA 0.42 8 3928734 3947435

Neighbor

gene id symbol gene type direction distance location
AMCG00016050 NA coding downstream 93379 3823251 ~ 3835355 (-)
AMCG00016045 NA coding downstream 144238 3783534 ~ 3784496 (-)
AMCG00016047 NA coding downstream 260176 3622918 ~ 3668558 (-)
AMCG00016042 NA coding downstream 425883 3497702 ~ 3502851 (-)
AMCG00016041 NA coding downstream 452741 3463666 ~ 3475993 (-)
AMCG00016053 lhfp,LOC105029023,LOC107670626,LOC107740377,LOC107593461 coding upstream 157296 4104731 ~ 4105731 (-)
AMCG00016058 NA coding upstream 429010 4376445 ~ 4378160 (-)
AMCG00016059 foxo1 coding upstream 477553 4424988 ~ 4427749 (-)
AMCG00016063 NA coding upstream 495981 4443416 ~ 4451855 (-)
AMCG00016064 LOC105011210,LOC107718790 coding upstream 528904 4476339 ~ 4490665 (-)
G10673 NA non-coding downstream 16462 3869724 ~ 3912272 (-)
G10624 NA non-coding downstream 186472 3741593 ~ 3742262 (-)
G10592 NA non-coding downstream 381643 3490758 ~ 3547091 (-)
G10596 NA non-coding downstream 406699 3514439 ~ 3522035 (-)
G10556 NA non-coding downstream 550149 3378378 ~ 3378585 (-)
G10692 NA non-coding upstream 24451 3971886 ~ 3973511 (-)
G10696 NA non-coding upstream 30124 3977559 ~ 3979117 (-)
G10698 NA non-coding upstream 40218 3987653 ~ 3987955 (-)
G10715 NA non-coding upstream 219343 4166778 ~ 4170338 (-)
G10735 NA non-coding upstream 407418 4354853 ~ 4355296 (-)
AMCG00016049 NA other downstream 8231 3886298 ~ 3920503 (-)
AMCG00016046 NA other downstream 386198 3528842 ~ 3542536 (-)
G10478 NA other downstream 893551 3034422 ~ 3035183 (-)
AMCG00016029 NA other downstream 1082377 2784125 ~ 2846357 (-)
G10420 LOC101154678 other downstream 1218049 2710399 ~ 2710685 (-)
AMCG00016074 NA other upstream 956421 4903856 ~ 4929900 (-)
AMCG00016110 ufm1,LOC107701138 other upstream 3733476 7680911 ~ 7753437 (-)
AMCG00016119 NA other upstream 4171786 8119221 ~ 8124033 (-)
G11326 NA other upstream 4244111 8191546 ~ 8194432 (-)
AMCG00016134 NA other upstream 4876110 8823545 ~ 8827760 (-)

Expression


Co-expression Network