AMCG00016055 (cog6)


Basic Information

Item Value
gene id AMCG00016055
gene name cog6
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 4201763 ~ 4205314 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016055
GTTCAGTTTGATCGGTACCTGTCATCTCCAGACTCTCTACTTATGCCACAGCTGAACTTCCTCCTCAGTGCAACACTAAAaGAACAGATTTTCAAGCAGTCCACCGAGCTGGTGTGCCGAGCCTACAGTGAGGTGCACACTGCCGTCACCGACCCCTTGAACCAGTACAAGGAGCCGGAGTCCATTCTCTACCGATCTCCCCAGCAGGTTCAGACACTATTCTCCTAA

Function

symbol description
cog6 Predicted to be involved in intra-Golgi vesicle-mediated transport. Predicted to act upstream of or within protein transport. Predicted to be located in Golgi membrane. Predicted to be part of Golgi transport complex. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIl. Orthologous to human COG6 (component of oligomeric golgi complex 6).

NR:

description
PREDICTED: conserved oligomeric Golgi complex subunit 6

GO:

id name namespace
GO:0006891 intra-Golgi vesicle-mediated transport biological_process
GO:0017119 Golgi transport complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016055 True 228 mRNA 0.52 2 4201763 4205314

Neighbor

gene id symbol gene type direction distance location
AMCG00016056 cog6,LOC102796367 coding upstream 12807 4160355 ~ 4188956 (+)
AMCG00016057 cog6,LOC107740391,LOC107561480,LOC107670561 coding upstream 72885 4126490 ~ 4128878 (+)
AMCG00016051 LOC107671632 coding upstream 235577 3949181 ~ 3966186 (+)
AMCG00016054 NA coding upstream 317461 3883360 ~ 3884302 (+)
AMCG00016052 NA coding upstream 346853 3842627 ~ 3854910 (+)
AMCG00016060 NA coding downstream 264748 4470062 ~ 4477338 (+)
AMCG00016061 NA coding downstream 290504 4495818 ~ 4499954 (+)
AMCG00016067 proser1,LOC107556855 coding downstream 327010 4532324 ~ 4553950 (+)
AMCG00016066 stoml3b,stoml3,LOC103043838,LOC107556874,LOC108444492,LOC107720596,LOC103140675 coding downstream 364877 4570191 ~ 4576419 (+)
AMCG00016076 NA coding downstream 842894 5048208 ~ 5108992 (+)
G10695 NA non-coding upstream 222666 3977559 ~ 3979097 (+)
G10654 NA non-coding upstream 300341 3900576 ~ 3901422 (+)
G10627 NA non-coding upstream 380735 3777076 ~ 3821028 (+)
G10584 NA non-coding upstream 682172 3518888 ~ 3519591 (+)
G10560 NA non-coding upstream 758667 3438074 ~ 3443096 (+)
G10707 NA non-coding downstream 4067 4209381 ~ 4209645 (+)
G10732 NA non-coding downstream 130727 4336041 ~ 4336304 (+)
G10736 NA non-coding downstream 166173 4371487 ~ 4373721 (+)
G10737 NA non-coding downstream 170993 4376307 ~ 4377663 (+)
G10798 NA non-coding downstream 379920 4585234 ~ 4585486 (+)
AMCG00016030 NA other upstream 1389532 2759347 ~ 2812231 (+)
G10371 LOC105010782,LOC106603266 other upstream 1714012 2485542 ~ 2487751 (+)
G10350 NA other upstream 1888604 2312598 ~ 2313159 (+)
G10739 foxo1 other downstream 221832 4427146 ~ 4428059 (+)
AMCG00016079 NA other downstream 2436344 6641658 ~ 6661668 (+)
G10981 cct8,LOC107693911 other downstream 2458772 6664086 ~ 6665548 (+)
AMCG00016091 NA other downstream 2816833 7022147 ~ 7024851 (+)
AMCG00016103 NA other downstream 3064541 7269855 ~ 7302042 (+)

Expression


Co-expression Network