AMCG00016060


Basic Information

Item Value
gene id AMCG00016060
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 4470062 ~ 4477338 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016060
AGTTACTGCTTAATGAAGCAAGTCAGTTGGTCAGTTAGGGGAACTGTGTTTGTTACACACAATCTCCAAATTACCGAATTTTCCATGGCAAGTCTTGATAGATTGATTCCTGAAATTTGTTGCACATACAGTAAACCAAAAATGATAAGTCGTGGCCCTCTGttcttctctgtctccctcaGGAGGTACGGCATGTGTGCTCAGCGGGCAGCCCTTCGACACGGCCAAGGTGAAAATGCAGACCTTCCCCACACTATACCGCAGCTTTGTTGACTGCTTCCTCACCACCTACAGGCAGGTGGGCTTCCGGGGTCTGTACCACGGCACCACGCCTGCCCTAGTGGCCAACATCGCAGAGAACTCGGTGCTCTTCATGTGCTACGGCTTCTGCCAGCAGGTGGTGAGGAAGTGCCTGGGCAGAGACCGCTCCGCAGTGCTCAGTGACCTGGAGAATGCAGCAGCTGGCTCTGTTGCGTCCATCTTCTCCTCACTGGTGTTGTGTCCTACAGAGCTGGTGAAGTGCCGTCTACAGGCCATGCATGAAATGAAGGCTTCTGGCAAGATAGCTAAGGGGCAAAATTCTGTCTTTTCGGTGGTGAGGGCTGTGTTGCAGTCTGAGGGCCCGCTGGGAATGTACCAGGGTCTAAGCAGCACGCTGGTCAGAGAGGTGCCTGgatatttcttcttcttcggGGGCTACGAGCTCGGCCGATCCGTCTTCGCATCCTCTGCAGGGAAGTCCAAGGAAGAGCTAGGGGTGCTGCCTGTGGTGCTGAGCGGGGGGTTCGGCGGGGCATGTCTCTGGCTGGCAGTCTACCCCATCGACTGCGTTAAGTCCAGAATTCAGGTCCTTTCCATGGCCGGCAAGCAGGCAGGCTTCCTCAAGACTTTCAGCAGCATCGTCAGGAATGAAGGAATACCAGCATTGTATTCCGGTCTGACACCCACTCTCATCAGGACTTTCCCTGCTAATGGAGCTCTCTTCCTGGCCTACGAGCTCAGCCGGAAGATGATGATGAAACACTTCGATAGTTGAGCTCTGTCTCTATCTCAGGTCTCTCCCCCCTGTCCTGCCTTCTCTATTCCTGAATGCCCCACCCCTTCAAACAATATGTACCTATAAGCATATAGTGTATTTGAAAATACCAGCAGAGTGGTAAATCAACAAACCAATTTCCATCTCCTTCAGTACAGCATCGGATGTATCACTGCCATTTCACAACTTCAGTATCATGCTGAAAGAGATGGAAGATGATCTTGCTGCATGGTTGTATTTGTATAACACTGCTGTGTTGAAAGGCTGGTGCAGGGAAAGTCTTACTTGACGGTGTATGCTCTACAAAGGGTCTGGAATATTCTATTTGTTtagggcagtggttctcaaacctgttcTGGAGAACCACCTAtgctgctggtttttgttccaactgggctctcaattacttcattgaactcttaatttaagtaatttgattacatttgactttttaaattgtgtaagtgataaaaagttggttccttaataagataatttccTTAAACAGttgtatacttaacttaaaaccccaactgttaaaaatgattaaagggCTCagatttatgaaattattagttcaattaagtgttcaatcaagtaattgagagcttgttGGAACAAGGTatgagaaccactgctttagagTATTTTTGTTTAACCCAAAGTCATAAGGCGTTCATTTTGTGAATGTGTTTCTCTTACATTTTTAACTGAACCACAGTCAAAGTTGACCTTAAATGCTCagacatgcacaaacacacattcccaaacagtaaaataaaatgacactttTAAAAGTTCATAATAGTTCATCTTCACATTTTTATGCACAGAATAGATTTAAAAGATTGAACATTAAGAGCAGCAGCCACAGTGTGTTAATCCTGTTCCATAACACACTCCTTGTcccttatttattgtatttatttgagatgttttattgtttccagTAAGATATTGAATCAATTTCCCTTTAAACCCATtcactgtgttttgtgtgattgGTAGTCATATTGTGAAGTTCACAACACTGGCCTCATAGGACATTCAAGCACACCACTCTGTAGAGACTGCCAGCTGCGAGTGGCTCccaagccccccaccccccatggATGACAAGAGAGACAATTCTCCCAAAAATAAGCATTCTTTTCACGGATTTGTCAGTGTTTAATGCTTGTCCCTGCAAAAGCTCAGGCTTACAGAGGGAGAAATTAGTCAATTTTCCTTAAAGTTCTCCTTCCCCAAATGGCCTGTGTGTTTgctcaattattttaaaccttaATGTCAACTACTTAAACAACGAAATGATTTTGTTAGGTATCTAATCTTGAATTTGAACCCCATCTGTCATAGACAAGAGGCTGCTAACCCAACAAATCTATCTTCATCCTTACTTGACTGTTTTGCTCCCCTTTCCTCTGCTAGCATTTAGACTCTGAAACAGTCTTGATAATGCTCTGCCTGTCTCTTTTGACTGTTACTACACCTGTTTGTAAAATACAGAACCTAATAAAATGGCCACTAAGTACActaaacaaatctttaaaaccgtgtacatgtttgtaattCAACGGTTTATTTCAGGTTTGGGTAttgaaacatgcacatttttcctgTTCAAAAATTTAGCAAATGACAACAGATTTCTTGAAGTTCAAAATGTAGAGACTCGTTCCAAGgtcaaagtaaaacaataaatgtgatAGATAATGCAGCTTAAAAGAACTGCATGTGCTACACCCACTTTAAACCAAATGTTTCTGTGGTGAATTCAGTCATctgggaataaaaaaatacaaggaGGTCACGCTGAATGTTTGGTATGTGACAGAGGCTTAAACCTCCAAGAGTGCAGAAGTCCTTCAGTATGGCATTTCTCAGGTCCAGCAATTACACCTCCCCAAAGGCCAGCTCCACTCCGAAATCCTCCTTGTAGATATCCCAGGTCTTTGCTTTGTGAGGGTTGTCTAGCTCTTCTCTGGACAGGTACAGCCTGCAGTGAAACCAAGAGCATGAGTCAGAAAGACAGCATGCCAACATACTGGCACATCACAACAAGATAAAATCATTTTCTAAActgtgcaaaacattttcaagtgTGATTTAATTTCAGGTGAAATTAGTTTGACAATGTGTGTCAGAGAGTGTTTGGGGTTTAGCTGTCCAGATTGAAAAGTATAATGATGCAGGGTTATCTCCACTATTAGAGAGTAACAAAAACAGATCCACTTACATCCCATAATTTAACCATTTCTGCAATTCTTTCATAATGATCAAACATTCTTGAACTCACATACGAGAAAACAGCCAATTTCCAAAAATTCCTATACCTCTTAGCTTATTTAAATGTCATCCTATGCAGggaattatcagtatttaaaaatgtttcacttaCCAACAacatttcaggacacttaaatgACAAtggtgcaagtttcacaggatgtgcATTTGATTTTGATAAGTAGTTTCGTTACGTTTAACCAACATTAATACAGAACACAGTACGGCTACTGTTGGTCAGTTACCGTGCATCctggaccaaaacatttttagatggAGAGAAGCAGGGTTGAtgtaacagattatttttttccactgtaaagATGTGCATCTAATTCTTATCCATGTGATGTATAGGTCATGTGAAAGGTGCGTCTTATTGTACTAGACATTATTTTGCTCAGATTCACTTTGTGGTCCTCTCCCCCAAACTGCACAAGATGACATATctcatacaataagagacacttCACACAACCTTATATAAAAAAGCTCTTACTGTAAAAGCAAGACCACATCATCTTGTCTACTTTTGTTCCTTTCATTAATGTTAgaagtagtactagtagtattTAACCATCAggttaataatgcattatttatagag

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15101 SLC25A2_15, ORNT; solute carrier family 25 (mitochondrial ornithine transporter) member 2/15

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016060 True 3929 mRNA 0.42 5 4470062 4477338

Neighbor

gene id symbol gene type direction distance location
AMCG00016055 cog6 coding upstream 264748 4201763 ~ 4205314 (+)
AMCG00016056 cog6,LOC102796367 coding upstream 281106 4160355 ~ 4188956 (+)
AMCG00016057 cog6,LOC107740391,LOC107561480,LOC107670561 coding upstream 341184 4126490 ~ 4128878 (+)
AMCG00016051 LOC107671632 coding upstream 503876 3949181 ~ 3966186 (+)
AMCG00016054 NA coding upstream 585760 3883360 ~ 3884302 (+)
AMCG00016061 NA coding downstream 18480 4495818 ~ 4499954 (+)
AMCG00016067 proser1,LOC107556855 coding downstream 54986 4532324 ~ 4553950 (+)
AMCG00016066 stoml3b,stoml3,LOC103043838,LOC107556874,LOC108444492,LOC107720596,LOC103140675 coding downstream 92853 4570191 ~ 4576419 (+)
AMCG00016076 NA coding downstream 570870 5048208 ~ 5108992 (+)
AMCG00016077 NA coding downstream 1895061 6372399 ~ 6487517 (+)
G10737 NA non-coding upstream 92399 4376307 ~ 4377663 (+)
G10736 NA non-coding upstream 96341 4371487 ~ 4373721 (+)
G10732 NA non-coding upstream 133758 4336041 ~ 4336304 (+)
G10707 NA non-coding upstream 260417 4209381 ~ 4209645 (+)
G10695 NA non-coding upstream 490965 3977559 ~ 3979097 (+)
G10798 NA non-coding downstream 107896 4585234 ~ 4585486 (+)
G10794 NA non-coding downstream 109210 4586548 ~ 4587637 (+)
G10853 NA non-coding downstream 430468 4907806 ~ 4912418 (+)
G10939 NA non-coding downstream 1363890 5841228 ~ 5841821 (+)
G11021 LOC107718733,LOC107555187 non-coding downstream 2258272 6735610 ~ 6744358 (+)
G10739 foxo1 other upstream 42003 4427146 ~ 4428059 (+)
AMCG00016030 NA other upstream 1657831 2759347 ~ 2812231 (+)
G10371 LOC105010782,LOC106603266 other upstream 1982311 2485542 ~ 2487751 (+)
G10350 NA other upstream 2156903 2312598 ~ 2313159 (+)
AMCG00016079 NA other downstream 2164320 6641658 ~ 6661668 (+)
G10981 cct8,LOC107693911 other downstream 2186748 6664086 ~ 6665548 (+)
AMCG00016091 NA other downstream 2544809 7022147 ~ 7024851 (+)
AMCG00016103 NA other downstream 2792517 7269855 ~ 7302042 (+)
AMCG00016101 trim3b,LOC108423836,LOC103363426,LOC107701140,LOC107720632 other downstream 2969112 7446450 ~ 7478586 (+)

Expression


Co-expression Network