AMCG00016062


Basic Information

Item Value
gene id AMCG00016062
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 4507463 ~ 4517486 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016062
TTGCTGAGTCGCGGACACGGCTGCAGACGTGCTGCCTTCACTTGTGTTGTCTGttaataaatctaaataaatgaacTCATCTGAAGGCCTCGATTAGACATAATGATGGCTTTACTGGGATGACATtcagtttgcttttttatttatttaacgcGGAGAACAATCGTCTGACCAGTTTCCAAGAACTaGTGGCTGTGGCAGGGGCACCCTGAACAGGTGCTGTGTGGAAGGTCATGTGGTGTGTGGGGGTTCCAGGACCTGTTAGCCGGAATGCCACGGGCTCTGACAAGTGCCACTCCAGCATTCCTGCTGCTGCTCTATGGAtatgCTCTCGCACAAATCCGTCATTGGCCCAGTGTACATGTGGCTTTAAGCAACGGCACCGTGTTTGTGGATTTCCATTGTGACAGGAATGGGACGGTGGGGGAAATGATCATCTCCCTGGTTGATATGGAGACCAACGTTACTGTGGCCCAGAGACCGGTACCAGCCAACCAGTCAGAAGGCACAGTGGAATTTAACTGTCCCTGCTTTCTGTATGCTGGAAAGTTCAGGTTCAGGCTGCAGCTGAGTGAGGATGCTGGGAGCTGCAATGCCACCGATTGGTGGAGTGAGGTACTGCATGTCCAGTGGCCCACCTTCATCATCAACGTGGAAAGGTCAAGCAACAAGAGCTCGGGCTCCTTCCAGATCGCCATTTCCACCAGTGCATACTTTGAGCCCTGTAGCACCAATTCATCCTCTCTTTACTTAGAAGTCAGCTATGTGGAATACAACCTGATAGGGCGCAACAGCATCGATAAGGTGAGGAAGATCGTCACAAAGGAAATCGGCGTCGTGAAATCACAGAGCCACGAACTCGACTGCATGTATCCCTTCACCGAGCGGGATTTCATCACAGTCTCCCTGAAGTCCAAGCACACCCACCTGGATATAAAGAGTTCAGGGAGGCTGTACCTGTCGCAGTTATTCTCCTATAAGCTGCTTGTGGACAACACGTATAAGGCAGGCTGCGAGGGGACGGTGGCTGTGCGGCTGCTGCCCCCACCCTGTGCCTTCACCCATGGGAAGGTGGTCCTTTACAGGGAAGGCAGCGGGGGCTCAGGAATCAGCGACCTACCTGTAGCTTTTAACTGGCTCTCGCAGGGAGAGAACGAAACTGAGTTCAACTGCTCCCTGTTCGACCCGGGCAGAAACAAGTACTGccttaagtttattttaaacttcagcAGCTCACCCAGCCGCACCCAGATTTGTCTTATCGTGCAGAGGAACACAGAAACATGGGGCCTTTGGCTGTCCTGGAGCTCATGCAGTGTCAGTTGTGGAGAAGGAGTGAGGGAGCGGTATCGTGAGTGCTTGGCACCATCCACTGGGAGAGCCCACTGCACTGGCCTCCAGAGAGAGCTGTCCCACTGCTCCCTCGAGGACTGCACAGCACCATCAACCTCGCCTTCCCTGGCTCCCGTTCCCCCTGAAAACAGTGCACAGACTGGCAACATGGTGGCAGTAGCTGGAATCTCCCTGTGCCTGGTGGTCATCGTGGCCACGGTGCTCATTACCGTGTGGAGGAAGCTGTGCCAGTCACAAAAGTGCAGCTCGGTTCGCCGCCACAGCTCCGTCCACTCCCCTGGCTTCAGAAAGAACTCAGATGAGGTCAGCATCTACTGTCAGAGCCAGCAGTGCCACAGCTTCACAGAAAGCCTGGAGGCCCTGCCAGAGAAGGCCGGGGAAGGCTTTGAGAAGTCAACCATGGGCCGTAGGCGGAGTCACCCGCTCTCTCCCGACCAGAATGTTGCTGTTCTGGGGGAGAGCTTGTCACCCAGTGCCCAGAAGATCATCCCTCCCATCTTCGGCTACCGGCTTGCCCAGCAGCAGCTCAAGGAGATGAAAAAGAAAGGCCTGAAGGAGGCTACCAAGGTCTACCACGTGTCCCAGAACCCCCTCGACGATACTGTCCTCAACACTGCCACCACTGCACCCGTCCCAGAGTCACCGGACAGCCAGGAGGAGGCCGCCCTCAACCGCTTCCGCTTAAAATCCCCATTCCTAGAGGCCAAGAGCCCCACTTCTCTTGAGAGGCTCAGCCCCAAGGTGGACTTCATGCTTTCTCAGCTAAGTCAGCCCCCTCTGTCCCCCCAGCTCAGCGGAGACTGGGTGGAGATGGTGGAGCGGGGCTACCCGAGGCACACACAATTCAGGAGGACCTCTAGCTTCCATGAGACCAAGCTGCCTCGGCCCTTCAGAGAGAGGAGCATGTCATCTGGTACTACAAGGCAGCTGGCCTCCACCGGCTACAGGATCAGGAGCCAGGAACGCCATCCAGAAAGCACAGAAAGCCGTCCCAAGTCCAGGCTGGGGGATCTGGGGGAGGGGAGGCTTCGACCTTGGAATGGCAGGTTGTCTCCCCAAGAGGCTGGAGCCTATTACCCTAGAATGGAACACGTGGCCGAGGGAGTAGAGAAGCCAGACCTCCTGGGCGATCGAAGACTGCGGGCCTGGACAGCTGGAGCAGAGAAACCAGAGCCCAGCCGGACCCGGAGAGGCCCATCGCCCATTCAGAGAAACATCATGGCCAGGAAATTGAAGGATGCAAACTCTGCAGCCACCCACAGCCACCAGAGAAGTGCCACCCTCAGCCCCTCCCAGTTCAGGAGAGATAAGTGCAAGAGCCTCCCACTGGACCCTGAGGAAGCCCTCTATCACAGCTCGCACTATGGCCTCACCGAAGTGGAGCAGCGCATGATGGATCTGTCAGGCTTCTttggggaagaggaggagaccTGAGACTTCGCACATTAACAGGTGCAGTTGATTGCACAAATCTGAGGTCCATGAATCCAGTTCATGATTCATCTCAAAGACTCATTTAGCAAGTTGGTTAGGATACTTTTAAGAGGCTTGGAGACGGAAAAAgtgcttatttttgtattttgtctttttttattgtgtttcataGAACAAGGTGGACCAATGTCAATTTAGGTGATACGCAAATCATATATAATTTTCATCACTTGAACATTAGAGGAGTACAAGTATTCCTAGTTATTTTTCCAGAGTGATCTCGCAAACATAACAAACTGGAGAAAGGTTTGGAAGCAGAAGTTGGTGTATGATGAACAATACAATTGACAAGGACCTACTCATTATGAAGAAGTCCTTGTTTTTTCCatagatattttttctttgtgagGGCTTCTGAGGAACCTCCGTGCTCATATCCACCATTAtgaacttgtatttttttttccttcttgtaaAACACCTGTGTTTTTTACATTGTCATTTTAGGACATCTCCAGTAGATAACGGATTATCTTCATCTTATTCTGAAGTGCAAACAGCACTCAAGGAATTCAGGTTCATGTGTAATGGGAAGATTCCAGACTGTGAAGCTGCTTTAAATATTACCATTGAATGAGAGCTCCTGGAATAGTTCTAGTGAAATATATCTTAACAAGTGTCATAAGAGCTCATCATAGTTGGTTATCTTCTGATGCtttgtccacatgcatttttttgCATGATTGGATCGCACATGAGTCACTAGTTTAACACATCCTACTGTACTTTATCTATATCTGTCCTGGGCCAAAGAATGTATGTAGATGTTTACTAAAATATGATACTTTTGACAGTTTTCCATTCTGTgatttaaacatgc

Function

GO: NA

KEGG:

id description
K24433 THSD1; thrombospondin type-1 domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016062 True 3667 mRNA 0.51 5 4507463 4517486

Neighbor

gene id symbol gene type direction distance location
AMCG00016064 LOC105011210,LOC107718790 coding downstream 16798 4476339 ~ 4490665 (-)
AMCG00016063 NA coding downstream 55608 4443416 ~ 4451855 (-)
AMCG00016059 foxo1 coding downstream 79714 4424988 ~ 4427749 (-)
AMCG00016058 NA coding downstream 129303 4376445 ~ 4378160 (-)
AMCG00016053 lhfp,LOC105029023,LOC107670626,LOC107740377,LOC107593461 coding downstream 401732 4104731 ~ 4105731 (-)
AMCG00016065 vps36,LOC107701118 coding upstream 1084 4518570 ~ 4532263 (-)
AMCG00016073 LOC105011208,LOC102232466,LOC101073007,LOC103140675 coding upstream 59058 4576544 ~ 4582296 (-)
AMCG00016072 LOC102232466,LOC105915781,LOC105011208,LOC106514111,LOC104923823 coding upstream 83455 4600941 ~ 4603273 (-)
AMCG00016071 NA coding upstream 109098 4626584 ~ 4635627 (-)
AMCG00016068 NA coding upstream 125854 4643340 ~ 4664628 (-)
G10740 NA non-coding downstream 133742 4371465 ~ 4373721 (-)
G10735 NA non-coding downstream 152167 4354853 ~ 4355296 (-)
G10715 NA non-coding downstream 337125 4166778 ~ 4170338 (-)
G10698 NA non-coding downstream 519508 3987653 ~ 3987955 (-)
G10696 NA non-coding downstream 528346 3977559 ~ 3979117 (-)
G10805 NA non-coding upstream 69237 4586723 ~ 4587875 (-)
G10806 NA non-coding upstream 74334 4591820 ~ 4592077 (-)
G10812 NA non-coding upstream 105245 4622731 ~ 4623216 (-)
G10821 NA non-coding upstream 120964 4638450 ~ 4638659 (-)
G10823 NA non-coding upstream 122303 4639789 ~ 4641030 (-)
AMCG00016049 NA other downstream 586960 3886298 ~ 3920503 (-)
AMCG00016046 NA other downstream 964927 3528842 ~ 3542536 (-)
G10478 NA other downstream 1472280 3034422 ~ 3035183 (-)
AMCG00016029 NA other downstream 1661106 2784125 ~ 2846357 (-)
G10420 LOC101154678 other downstream 1796778 2710399 ~ 2710685 (-)
AMCG00016074 NA other upstream 386370 4903856 ~ 4929900 (-)
AMCG00016110 ufm1,LOC107701138 other upstream 3163425 7680911 ~ 7753437 (-)
AMCG00016119 NA other upstream 3601735 8119221 ~ 8124033 (-)
G11326 NA other upstream 3674060 8191546 ~ 8194432 (-)
AMCG00016134 NA other upstream 4306059 8823545 ~ 8827760 (-)

Expression


Co-expression Network