AMCG00016066 (stoml3b,stoml3,LOC103043838,LOC107556874,LOC108444492,LOC107720596,LOC103140675)


Basic Information

Item Value
gene id AMCG00016066
gene name stoml3b,stoml3,LOC103043838,LOC107556874,LOC108444492,LOC107720596,LOC103140675
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 4570191 ~ 4576419 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016066
TTACCACTACGTCACTTATCTGTTTTCCtgtcaaatatttacatgctACGATGACTGAAAACAGGTCCTGCCCACTGCTGAAATTGCCCTAGGCTAACCATTAAAAGCTCACCACTCCCTCATTCCTAACAGAAGTAACTCAAAAAAACATATGGAAATGGAAACACAAAGCAGTGTTGAAATGCACAGCAAACAGGATTTAATAGAAGATCATCATGGTGGTCTGGGCTGCTGCGGCTGGGTCTTGGTTATCCTCTCCGGTCTCTTTGTGGTTTTGACTTTCCCCATCTCCCTCTTCTTGTGTATAAAGATTGTACAGGAGTATGAACGGGCTGTCATATTCCGACTGGGGCGCATCACCTCCAGAAAGGCGAAGGGGCCGGGTCTGTTCTTCATCTTGCCCTGCACCGACTCCTTTGTGAAAGTTGATATGAGAACAGTTTCCTTTGATATCCCTCCACAAGAGATCCTGACAAAAGACTCAGTGACTGTGGCTGTGGATGGAGTGGTCTACTTCAGAGTCCAGTCGGCCATCTCCTCAGTCGCCAATGTGAGCAATGCTGACTCCTCCACCCGCCTGCTGGCTCAGACCACTCTGAGGAACGTCCTGGGCACAAAGAACCTGTCTGAGCTGCTCTCTGACCGTGAGGAGATCTCCCACAGCATGCAGGTGACACTTGATGCCGCCACAGATAGCTGGGGTATTAAGGTGGAGCGTGTCGAGATCAAGGATGTCAAACTGCCTGTTCAGCTGCAGAGGGCTATGGCAGCTGAGGCAGAAGCTACCAGAGAGGCCAGAGCCAAGGTTATAGCAGCAGAGGGGGAGATGAATGCCTCACGGGCCCTGAAAGAAGCCTCCCTGGTGATCGCTGAGTCTCCCTCCGGCCTGCAGCTGCGCTACCTGCAGACCCTCACCACCATTGCCAGTGAGAAGAACTCTACCATCGTCTTCCCCCTGCCTATTGATGTGCTGCAGACCTACCTGAAGGGGAAATGACTCCCCAGCCTTGCTCCTTAACGTCATAGCAAGATGAACAAagttttgtgctttttcatttcaaacagaCATCTGGTCAGCCTCACTTTGGAACAAACTTATCCTTATACTtgatatgaaatatatttctattcCACTACTTACATTGGTTTTCGGATATCACAATACACACAGATATGACAgagtttaaaaacattgaatacCAGATCCATGTTTACCAACTTATCTGCCAGAGGTGAAGAGTACACTTGGGCCTGGATTGGATCAAATATTCCATCCCCTCTTGCTTCtaacaaaaatctaattttgattGGCTGTTGGGTGGAAGCTTTCATTGAATACATGAGCCTCATTGTCAacagcatttaaatatgtgtatgcACTTGTGAAAATTAGACCACAGTCATTGCactgaaattatttaatgtattgaaaaatatgaCAATGCAGTGCTGGGGAACTCCCACAATTGGTCAGCGTTGGGTTAGAATCCAAAGGCCCCAGAATGCTGTTTGCCAGAAAAAGTTAAGCAGTCATATAAGAATGGAGttctataaattattttaattatttttactgtgAATTGTAATATATACTGACAatgaatattgaaataaatgtaaatacatgctGTGTATGCTACTTGATATACCTgacttgcatttttaatttgaagcacATAACATCATATGAAATGACAATTTATGTTCACTCTCCAAATGTCTAATGGAAGCCAGCATATCTTCACAGAAGTACAGTTCCCATTTATAGACTGTCACATCAGCCTTAAAACTTACTGTATTATGTCAACTGTGCACTTTCCAGAACTGAACCATTAACATGTATACGTTTGtcctatgtttattttttgattatgatgaataaacatttacacaaaat

Function

symbol description
stoml3b Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in intestinal bulb. Orthologous to human STOML3 (stomatin like 3).
stoml3 Predicted to act upstream of or within signal transduction. Predicted to be located in cilium and membrane raft. Predicted to be integral component of membrane. Predicted to be active in plasma membrane.

NR:

description
erythrocyte band 7 integral membrane protein-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K17286 STOM; erythrocyte band 7 integral membrane protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016066 True 1897 mRNA 0.43 7 4570191 4576419

Neighbor

gene id symbol gene type direction distance location
AMCG00016067 proser1,LOC107556855 coding upstream 16241 4532324 ~ 4553950 (+)
AMCG00016061 NA coding upstream 70237 4495818 ~ 4499954 (+)
AMCG00016060 NA coding upstream 92853 4470062 ~ 4477338 (+)
AMCG00016055 cog6 coding upstream 364877 4201763 ~ 4205314 (+)
AMCG00016056 cog6,LOC102796367 coding upstream 381235 4160355 ~ 4188956 (+)
AMCG00016076 NA coding downstream 471789 5048208 ~ 5108992 (+)
AMCG00016077 NA coding downstream 1795980 6372399 ~ 6487517 (+)
AMCG00016080 NA coding downstream 2093887 6670306 ~ 6679037 (+)
AMCG00016078 NA coding downstream 2114334 6690753 ~ 6700886 (+)
AMCG00016092 hunk,LOC106595522 coding downstream 2417577 6993996 ~ 7008772 (+)
G10737 NA non-coding upstream 192528 4376307 ~ 4377663 (+)
G10736 NA non-coding upstream 196470 4371487 ~ 4373721 (+)
G10732 NA non-coding upstream 233887 4336041 ~ 4336304 (+)
G10707 NA non-coding upstream 360546 4209381 ~ 4209645 (+)
G10695 NA non-coding upstream 591094 3977559 ~ 3979097 (+)
G10798 NA non-coding downstream 8815 4585234 ~ 4585486 (+)
G10794 NA non-coding downstream 10129 4586548 ~ 4587637 (+)
G10853 NA non-coding downstream 331387 4907806 ~ 4912418 (+)
G10939 NA non-coding downstream 1264809 5841228 ~ 5841821 (+)
G11021 LOC107718733,LOC107555187 non-coding downstream 2159191 6735610 ~ 6744358 (+)
G10739 foxo1 other upstream 142132 4427146 ~ 4428059 (+)
AMCG00016030 NA other upstream 1757960 2759347 ~ 2812231 (+)
G10371 LOC105010782,LOC106603266 other upstream 2082440 2485542 ~ 2487751 (+)
G10350 NA other upstream 2257032 2312598 ~ 2313159 (+)
AMCG00016079 NA other downstream 2065239 6641658 ~ 6661668 (+)
G10981 cct8,LOC107693911 other downstream 2087667 6664086 ~ 6665548 (+)
AMCG00016091 NA other downstream 2445728 7022147 ~ 7024851 (+)
AMCG00016103 NA other downstream 2693436 7269855 ~ 7302042 (+)
AMCG00016101 trim3b,LOC108423836,LOC103363426,LOC107701140,LOC107720632 other downstream 2870031 7446450 ~ 7478586 (+)

Expression


Co-expression Network