AMCG00016069 (LOC103044157,LOC107720662,LOC107556867)



Basic Information


Item Value
gene id AMCG00016069
gene name LOC103044157,LOC107720662,LOC107556867
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 4861485 ~ 4887805 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00016069
AGGTCTCTCTTGACGGTGAAGACCATGGCCTGTGAGAAGCTTCTGGGTTTTGGGAAGCAGCTGCTGAGGGTGAAGGTGGTGGACTGCAACTTGGAGGACTCGCGCCTGTCACGCTGCCTCAACACCTTTGACCTGATCGCTCTTGGGGTGGGCAGCACCTTGGGGGCCGGGGTGTACGTGCTGGCTGGAGCTGTGGCCAGAGAGAATGCTGGGCCCGCCATCGTCCTCTCCTTCCTGATTGCCGCCCTGGCCTCCGTTCTAGCAGGCTTGTGCTATGCCGAGTTCGGGGCCCGTGTGCCCAAAACGGGATCTGCCTACCTCTACAGCTATGTGACTGTGGGTGAGCTCTGGGCTTTCATCACTGGCTGGAATCTCATCCTGTCCTACGTGATAGgaacatcaagtgTAGCTCGAGCTTGGAGTGCTACGTTCGATGAGCTCATTGGCAAACACATCGAGCACTTCTGCAAAGCACACATGTCCATGAACGCCCCCGGGATACTGGCCGAATACCCAGACATGTTTGCAGTGTTGATCATCTTAATTTTATCAGGGCTGCTGGCATTTGGAGTGAAGGAGTCGGCCATGGTCAATAAGGTGTTCACCTGCATCAACATCCTGGTACTGCTGTTTGTGGTGGTGTCGGGGCTGGTGAAGGGCACGCTAAAGAACTGGCGGCTCACCCAGGAGGAAATGATGAACATCACCAACACCTCCACCTATAATGTTTCAGTGGAGGAGGCAGCAGAATGGAAGTATGGTGAGGGAGGGTTCATGCCCTTTGGCTTCACCGGCGTCCTCTCTGGAGCTGCCACTTGTTTCTACGCCTTTGTGGGTTTTGACTGCATCGCCACCACAGGAGAGGAAGTGAAGAACCCCCAGAGAGCTATTCCCATTGGGATTGTGGCATCCTTGCTGATCTGCTTTGTGGCCTACTTTGGAGTCTCTGCTGCTCTCACCCTGATGATGCCCTATTACATGTTGGATAAAAACAGCCCCTTGCCTGTCGCTTTCAAATACGTGGGCTGGGAAGGCGCCACCTACGCTGTGGCCGTGGGCTCTCTGTGTGCTCTCTCAACGAGTCTTCTGGGTTCCATGTTTCCCCTGCCTCGGATTATTTTTGCAATGGCCAGAGACGGGCTGCTCTTCTCGTTTCTGGCCCGAGTGAGTGAGAGGAAAACCCCCATCGTGTCTACCTTGATGGCTGGGGTCATGTCTGCTGTCATGGCTTTCCTCTTTGACCTGAAGGACTTAGTGGACCTCATGTCCATTGGCACTCTTCTGGCCTACACGCTGGTTGCGGCCTGTGTTCTTGTCCTCAGGTATCAACCTGAACAGCCGAGTCTGGCCTACGAGAGGGCCAACACTTTGGATGAGAGTGAACTGACAGAGTCGGTTAGCAACAGTGATTCTCAGACAGGCATACTGCCTTTTGGGGAAGACAAATTCAGCAtaaagggtttgtttttccCAGAGAACTCCAATCCCACCCACCTCTCTGGCTTTGCAGTTAACATCTGTGCCAGCAGCCTTGGGCTCCTGGTCTTTGTCTTTTGCGTCGTGGCTGTGCAGGGTGGGATGGAGACGTGGTCTGTGGTGCTGCTCATTTTCCTGGCTGTCCTGAGTGCTTTCATCACTTTCATCATCTGGAGACAGCCGGAAAGCAAGACCAAACTCTCCTTTAAGGTTCCCTTGCTGCCAATTATTCCCGTCGTCAGTATGTTTGTCAATGTGTATCTCATGATGCAGCTGGACAGAGGAACTTGGATACGCTTTGCTTTGTGGATGCTGATAGGATTCATCATCTACTTTGGGTATGGAATCAGACACAGTACAGAGGGAGCGTTGAGGCATGCAGGTACAGAGACTACTCTGAACGGATACAAACAGACTTCCTCATTAAATGGTGACCCCATGGCTCCAGAGAAAGAGGCCTTTCTGACCGACCCCAATGAGCTAGAACCCAGGAACCAGTGGAACGAAGAAGAGGGAGAATCTTAAACCGCTAGGGAGTGCTCCAGCTCCAACCAGCCTGACCCCTGCTTTAACTAAACACGATGTTGAAGAGACAAGAGAACCAGAATCTAAAAGCAAAAAGGGAATCCAGGCTGCAGAGCTTGCTTGAGCTGTGTGAGATCCAtctcaaaaagaaaagaatggtGGCTAATGCATTGACTTCTTGACTGCTTCAGCGCACTGTGAGCTCTTGTCCGCTAAAAAGTGTAGCTGCGATGACAAGAATCTCAAATGAAGACTTTCAGGAGGTGCTGTGAGAACTAAATACCAAAAACTAAATAGCCAATCATTGTGTAAGAACATTTAAGTTATGCTCCTGGTTATTAGATACAAACTGTTACAGGCTGCTCAGCTTTACTGTATAAGATCACTTGTTCTTGTACTTGCCTTTGCTCAGAAATAGTCagcaaagttttgttttttgtattgaacCCCAGTAAAATTGTCAGTAACCTAGgacttaacaaaacaaaatacggAACAACAGCAGGTCTTTCATAACTGAGCAGAAGCAATACTGGGAAGGTTTTGGGTCAGATTCAGTCAATTTCTCAGTCAGGtagaaatgtggaaaatgtCAATTCTGCGCTTGTCTCATGTAACATGTCCATACATGTTACATGTTGAGTGAGAGGCTCTGTCACATGACATGCTACAGTAGAGCAAATACTGTAGGTATTTatgggtatttaaaaaatatatattacagtacataCCAGAGCAGTCCAAATAGGTTGGAAGCCTAGGTCTGTgaccatattatttatttattagcaggccCTTATCCAGGACCATATCATGTGACTGCTTGGTGATTTAGGCTAGCTATCATTGAGCCTCTAGTACCTCGGACCTAGTACTCATGGCAAGTGTAACAATTCATTAGAGAAATCAAACGATTGCCACTGACTTGACCTCTTGAAAGAGTGCAACTCAAAATCaaagagaaattaaacatttttgaaatttgGGGGTATGATGAAGAGTAAAGGAAACTTTCAACTGAACAGCTTAACCCAAGTTGCTGATGTTTATAGAGCTGCAGAAATCAGTCCTAACCATtcggttttttgtttgtttgctttgttgtttttttggagtGCAGACTTATGCTTTGCATAATTCATTACTGGCTAGCTTTAATTAAAAGCTTATATGCCGCATGACAATGGATGCATTCAGAGCTACAGTGCTGGTCACTAGGACTTGGAAATGCTAAACATCCATCTTAATATGAGTTTTaggtgtatgtttttgtttattttaataattgaacatGACCTGTTTGGCAGAGAAGGAAAATAGTAGCATGCTAAAATTATAGAAGTGATTTTAGGTAAATATTTGGTTTGCTTTGTTCAATATGAACTGAGAACTGGATTGATAAACACCTTGGTCAGTAATACTGACTCACTAAAGTTGAAGGACCTGCAAATAGAGCAAGTTATGCAAAGATGTAGCTTTGTAAACCTGCCCCTCAATAGGACACATAGGTGTACGTACCTCTTTTTCTTATAAATTATCTTTAATTCAGCATGGTCTGCAGCACCACATAATATTATTAGGAAAATGACACCCTGATTTCTTTTAGTTACAAGCATTTTGGCCTGTTAGGGGACGAAACTGGGTGTATTAAATGTAAGTGTCTCACCACCAGTCCTTATGTCTGAAAAAGCTCTCCTGAAGAGCATGTGAATTttagtcaatcaatcaatttgtatttatttagaatagTGCCCTTTGTAttgtagccacagagtgctttacaaaccaaataaacagaacaaatacataaaccatgaataatgaaataaaataaaccatttggcAAGGAGGAGCTAAAAAACGAAAACTCTTACAGGATGGcattgttataggagaaaataaatatctggggCTTAAGTCCTAGGTTGCCTCCTCTCCGGGTAGTATAATaaccctgtttccactggcttaaatGCCTGGAgggttttgtggccggttaactatctgctgccagacatGGCCATAAGCATCCATCACCCACTGAGGaaagtgccgtgtgggatcacaaataaattagttttattagcagtaTGGAgtgaaacaatgactgcttacagttaatatctgagtgtattaaaaacttgccgaacacagatttcacaggaccaattgcagtgctgtgacttgttaaaaataaactgaaagacaATAATCAAAGCAGCcggttttattaatattttatgaataattggacggtgtttcaggctgttatcctgtgaatggtttgcaggtctgttgtTTAACAGCttcgcagagacaatcagtatgaagatgatttagttaacgtgtgcccatttacaagttaaattaatgaataaataaatacagcagatctgggtttccctctaaaacattaaggacatttaataattgcatccataaacgccatgactgaaacgtgcacactttatttaaattataacctgctatattgtagctgcttgtactgtatgattaattgtgaaacgtgtgtattttgtttcagctgtaacttgccctggttaaaaataatacggcaaaaagtgttgtttgcagttacaaatctgtagtaagagtaataagttaagggcgTCAAGTtgagccatttaaaatacatatctactatcacatatcttgatgatgattacaataataacaataataataaatagcaaatatttatttttattgttccacatggaaacgttttttTATGGTAACGTAATGCTtatctgaatataatgttgtctatacacgtttagctcttcctaatatctcttgacagaaatgtgtatgtattacgctgtttacaatcatgtaaagcagaaagaataaaatagacacaaaagtcctttccacgtcaggctatatcgctcgtagtgttgttttgtctttgcttttaaaactaaacacaaaccaaacccacaatcctTTTGCTCCTCCTTGCTACagtggcctggttttacaaaaagctctgggacgtgTCCAGCACGGCATGGTATGGTACGGCACGGGCGCTTAAGCCCGAGGCATAATTATATGATAgagcagcaagaagatcagaaagttcaCAGTACACAGAAAGTGGAACTGCTTCACAGTTCATTAAACTTGAAACATTTGTCCCAAAAACTGgtcaaaataagtaataatttaGTAGTTGGGACCTAAAAGTATATGCATTAAATTATAAGATATAAAATGACAGCGGGACATTTCTGAATATACATCAAGGTATAGTACCTCATCAGGTATGTTAGTGGCACTCTCTATCTTTCTTGCTCACATCGGGactcaaaacaaaactgctgaaCATGAATTAAAATAGGCTTCTAGGTTTATTCCTCAGCCAGTGCTTCATGAAATATATGTAgcataatgttttattcagtctccacagcattaaataaacactattCTAGAGTTTTCCCCACCATCTATAAATCCTCAGGTATTTAgaatttacagatttgttttccattgttgtCACATTCAAACTGAGATGAATACTCGACACTCCATGTATGTAAATCCCATGGACCCTGGCATCTTTCACTTGCAATATAAGTGTGCATTATTTGTCTAATAATGACAAAGGCTTTAGGTAAGCATGGCAGGGGTGCCCCAACCATGCCAACCACCCCAACGAATGCCATCTGTGGCCCCCCGGTAGTGTGAACGAAACACCGTCAGCagcacccctcccccacccacaCCCCCTGAATATTATAGAAACCCCGCTGGTGCCACCCCAAGATTTTCAGTGGCCCCATCTGGCCACAcctaagaaaaaaaatctgggtGCACCACTGAAGCATGGTGGAGATTTTATCCCACTAGATGTTTTAATACTTTTCGACTTACTGAAGTGCTGTGCCTCTGTGTCATACATAATTTTTCGTCACTGGAAAAAGAgaatatattcataaaactACTACGCTGTTAAATGAATCTTCAATTTAAAGTGAAAAAGGACAGAATGAAGAAAGGACATTAATAAATCCTCATTGCCAAAACAAGTTATTGAAAAAGCATTGCACTAACTTTCATAACAGGTTAAAGTGATAGCTCTTCAGCTTCACTGACAGCCTATTTTACGGCTGTAATAACTGCCACTCTCTGTCTCCTTTCTGTTTATAAATCAGCCTGATCTCCACATAATATATTCACAGCTTAGTATTCCAGTGtcacacattttgttaaaactacCTATACCATGCCAAATTGcaaggtgtttttttgtgtgtgtgtaacctgTAAGATAAGGACGTCttccaataaataaagaaatagaaataaaaataatatataatttaaatctgtCCCCAACATGAAATGGTCAGGTTTGAAACCTTGAGTGGCAATACACTTTCACTGAAATGAAAGTTTTGGGGCAGAAGGTTCAAGTAGTGagttgaataaaaacaaatctctc

Function


NR:

description
high affinity cationic amino acid transporter 1 isoform X2

GO:

id name namespace
GO:0003333 amino acid transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015171 amino acid transmembrane transporter activity molecular_function

KEGG:

id description
K13863 SLC7A1, ATRC1; solute carrier family 7 (cationic amino acid transporter), member 1

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00016069 True 6475 mRNA 0.42 11 4861485 4887805

Neighbor


gene id symbol gene type direction distance location
AMCG00016070 NA coding downstream 98136 4745269 ~ 4763349 (-)
AMCG00016068 NA coding downstream 196857 4643340 ~ 4664628 (-)
AMCG00016071 NA coding downstream 225858 4626584 ~ 4635627 (-)
AMCG00016072 LOC102232466,LOC105915781,LOC105011208,LOC106514111,LOC104923823 coding downstream 258212 4600941 ~ 4603273 (-)
AMCG00016073 LOC105011208,LOC102232466,LOC101073007,LOC103140675 coding downstream 279189 4576544 ~ 4582296 (-)
AMCG00016075 NA coding upstream 45019 4932824 ~ 5269754 (-)
AMCG00016086 ltn1 coding upstream 1726900 6614705 ~ 6636697 (-)
AMCG00016081 NA coding upstream 1749527 6637332 ~ 6640537 (-)
AMCG00016084 cct8,LOC107693911,LOC107701129 coding upstream 1759502 6647307 ~ 6669012 (-)
AMCG00016087 grik1b,grik1,LOC105006673 coding upstream 1848141 6735946 ~ 6773094 (-)
G10823 NA non-coding downstream 220455 4639789 ~ 4641030 (-)
G10821 NA non-coding downstream 222826 4638450 ~ 4638659 (-)
G10812 NA non-coding downstream 238269 4622731 ~ 4623216 (-)
G10806 NA non-coding downstream 269408 4591820 ~ 4592077 (-)
G10805 NA non-coding downstream 273610 4586723 ~ 4587875 (-)
G10883 NA non-coding upstream 70274 4958079 ~ 4958278 (-)
G10924 NA non-coding upstream 105391 4993196 ~ 5065889 (-)
G10926 NA non-coding upstream 219112 5106917 ~ 5108966 (-)
G10931 NA non-coding upstream 693627 5581432 ~ 5581688 (-)
G10934 NA non-coding upstream 858531 5746336 ~ 5746567 (-)
AMCG00016049 NA other downstream 940982 3886298 ~ 3920503 (-)
AMCG00016046 NA other downstream 1318949 3528842 ~ 3542536 (-)
G10478 NA other downstream 1826302 3034422 ~ 3035183 (-)
AMCG00016029 NA other downstream 2015128 2784125 ~ 2846357 (-)
G10420 LOC101154678 other downstream 2150800 2710399 ~ 2710685 (-)
AMCG00016074 NA other upstream 16051 4903856 ~ 4929900 (-)
AMCG00016110 ufm1,LOC107701138 other upstream 2793106 7680911 ~ 7753437 (-)
AMCG00016119 NA other upstream 3231416 8119221 ~ 8124033 (-)
G11326 NA other upstream 3303741 8191546 ~ 8194432 (-)
AMCG00016134 NA other upstream 3935740 8823545 ~ 8827760 (-)

Expression



Co-expression Network