AMCG00016070


Basic Information

Item Value
gene id AMCG00016070
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 4745269 ~ 4763349 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016070
ATGAGTGTTCAGGGGGAGATCAGTGGGCCTTATGGCACTTGCCTGCAGGACAACAGAGGagagattaaaaacaacaataagcAGGCCTTTGTTCCAGAGGGAGATACTAATGCCAATGAGATCCTGGCAGAAGATGGGTACACTGAAGATGGGGGCAAAATGTGTAAGGGGAGGAGTGTGGAATCTGGCACCATCCCGCCTCTGGTGTCCCAGAGCGACGAGCAGGACAAAATCATTATCTGGGGCACAGGCTCCCAGTGTGATGACCCAGACTTGGAAGAATTTGAGTTGCTAGAATGCCAAGAGTTAGAGGCCTATTTGGTAGAGGAAGGTAAAGACAGTTTTTTGGATGAACCCTCAGCTTATTTACAGAGCAGTGCCTGCACTCCTTGTGTTCAGATGAAAGATGAAGAATTCTCTGCACAAGTGGGCTACCAGGACCAGGAATCCAACCTCTCATTGGGAAGTAGCAGTAAAGCTCCTGGACAGTCGACTACTGAATTCAGCTCAGAAAATGATATCTTTGTTTCCTGTGTTTCTGTACTATCAAGTCCAGGGGGAAGCTTAGCCAGTACCCTGGACAGCGCTGGGCGAACACAAGCAATGGAACCTCAGCACACGCCACCTGAACCATTCAGAATGACCTCAGAGGACACACTTGCTTTTCAGTCTAACGCCACTACCTCAGTGAAGGGCAGGAGGCCCAAGCAAGTTGTGAGCCATTGTGTTGGAAGCACAGCGCAATCTGAGAGCGTGGATCTAAACCTAAACTCGACATCTCAGTCTCAGGAAGCCCTACTCCAGTCAGAAGCACAGCCAGATAATGGAGGCCAACAGATAAGGCCCTGTGAATATCCCTCCCATCCTCAGAGCAATGGATCTGAGCTGACATCTGAATATTTCCAGAGGGAAGAAGGAGACCAAAATAGGTCTGGGGAGGGGCACCAAGTGAGGAGGGGAATGTCCCAGATTGGAAAGCATGACTTTGGTGAACCAACAGGCTCACTCTACCAACAAGAGCCCAGACCCCTCAGCTCTGAGATAGTCAGGGTACAATCCACAGAACAAACATTTCTTGAAGTTCAGTTGCAACACACCTGTATAGCTGAGAACAGAACATCCCAGATTGCTGAAAACATTGCACACAAACCAAGTCCCAAACCTAACGGCAAGCTCTCTCAACTCTCAGAGCCCGCCAGTGAGGAGCCTGCTGAAGTCAACAGCCATTGTCTCTCATCAAAAGAAGATGGTGCTGACTCAGACAAATCCAGCAGTCTTCAGAAACGGGATTCCAGtgaatgtgttttcattaacaATGGTAATGTCCCTACAGAAGAGCCATTGGTTGCAGGTAAAAAGCCACAGCTGGGAAAGAAATACTGTGCAGAGCCATCACCTGAATCCCCCACGTGGGCCAGAAGCACAGGCTCGCCTCGGAGAAGACACCCCCCTTCACCAGCAAAAGTGAACACAAGAGGGCAGCCCACTTCGAAAGATCCTGTTTCACTCTCCAGCGAGAGGCTCCATCCCTCTGGACATTCGGTGGACAACCTCCAGCAATTCATCAGTGGACTAAAAGCTCCTAGCAAAGTGTGCATCAACAGTGGAATCCCCAAGCCCATTCTGCAGCATTCTAGAGCCTCACTCCTGAACCGTGGGGAAGTGGAGAGCAGCAAACCTGAGGAGAAGAGTGAGGCAAAATTACCCCCTAAACCTAAACACGTGAGGCCCAAAATCATAACCTACATTCGCAAAAGCCCACAGGTCAAGCCTCACCTGGATGCCCCCTACGACGTCTCCACCCTCCCATCCAGACTTTCCACCTATACCAGCCCTCTGGCCAAAGAGCCCAAGCCACCAGGGAGCGACCCCAAATCCTCCCCGGTGTTGAGTGCTTCCAACATCCTGTACGATAAGTATCGGCACGAAATGCAAAAGGCCCGATTCTATTCTTCAGGGTTAGTGGTGTCTGGAATTAAGCCTCCCAGCCACACAGTTCCTCACAAGATGACAGGGAAGTCGGACAGTTTCTATGGAGAGCTATCTGACAAGTACTTAAAGGAGATTGGGAGTGAGACGGGCAGAGTGGCAGTTGGCCTGGCGGGAGCTGGTCGAGATGACCCCACCGTGACCCACCTGAGTTCACATGAAGCTGTGCCAGCCAGTGTGTTCCGGTCCTCCATGGTGCTCAGGCCTCAGCTGGGCCTCGGTGCCGTCAGCAGGCTACCCTCCACCAAGAGCAGGATGCTGCTGGCAAGTCAGAGGTCAGCCTTGACTTTCAGCCACCAGGCCCACATGGCCAATGCTGCTTCACACTGCTGTCTGGACCCCTCAGTAGTGGAGCAACGGAAGAGCACCCCAGGCACCCCCACCAAGTCAGGCCTCCCGAAGCCTGTGCAGTCCGGTCTGCGCCCCCCCGGCTACTCCCGCCTGCCTGCCGCTCGCCTCGCAGCCTTCGGGTTTGTCCGCAGTGCCAGTGTGTCCTCAGTGTCCAGCAACCAGTCCAACGAGAGCAGCCACACTGACCCCTGCAGGTCTTCCACC

Function

GO: NA

KEGG:

id description
ko04512 ECM-receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016070 True 2544 mRNA 0.53 3 4745269 4763349

Neighbor

gene id symbol gene type direction distance location
AMCG00016068 NA coding downstream 80641 4643340 ~ 4664628 (-)
AMCG00016071 NA coding downstream 109642 4626584 ~ 4635627 (-)
AMCG00016072 LOC102232466,LOC105915781,LOC105011208,LOC106514111,LOC104923823 coding downstream 141996 4600941 ~ 4603273 (-)
AMCG00016073 LOC105011208,LOC102232466,LOC101073007,LOC103140675 coding downstream 162973 4576544 ~ 4582296 (-)
AMCG00016065 vps36,LOC107701118 coding downstream 213006 4518570 ~ 4532263 (-)
AMCG00016069 LOC103044157,LOC107720662,LOC107556867 coding upstream 98136 4861485 ~ 4887805 (-)
AMCG00016075 NA coding upstream 169475 4932824 ~ 5269754 (-)
AMCG00016086 ltn1 coding upstream 1851356 6614705 ~ 6636697 (-)
AMCG00016081 NA coding upstream 1873983 6637332 ~ 6640537 (-)
AMCG00016084 cct8,LOC107693911,LOC107701129 coding upstream 1883958 6647307 ~ 6669012 (-)
G10823 NA non-coding downstream 104239 4639789 ~ 4641030 (-)
G10821 NA non-coding downstream 106610 4638450 ~ 4638659 (-)
G10812 NA non-coding downstream 122053 4622731 ~ 4623216 (-)
G10806 NA non-coding downstream 153192 4591820 ~ 4592077 (-)
G10805 NA non-coding downstream 157394 4586723 ~ 4587875 (-)
G10867 NA non-coding upstream 33478 4796827 ~ 4875011 (-)
G10883 NA non-coding upstream 194730 4958079 ~ 4958278 (-)
G10924 NA non-coding upstream 229847 4993196 ~ 5065889 (-)
G10926 NA non-coding upstream 343568 5106917 ~ 5108966 (-)
G10931 NA non-coding upstream 818083 5581432 ~ 5581688 (-)
AMCG00016049 NA other downstream 824766 3886298 ~ 3920503 (-)
AMCG00016046 NA other downstream 1202733 3528842 ~ 3542536 (-)
G10478 NA other downstream 1710086 3034422 ~ 3035183 (-)
AMCG00016029 NA other downstream 1898912 2784125 ~ 2846357 (-)
G10420 LOC101154678 other downstream 2034584 2710399 ~ 2710685 (-)
AMCG00016074 NA other upstream 140507 4903856 ~ 4929900 (-)
AMCG00016110 ufm1,LOC107701138 other upstream 2917562 7680911 ~ 7753437 (-)
AMCG00016119 NA other upstream 3355872 8119221 ~ 8124033 (-)
G11326 NA other upstream 3428197 8191546 ~ 8194432 (-)
AMCG00016134 NA other upstream 4060196 8823545 ~ 8827760 (-)

Expression


Co-expression Network