AMCG00016072 (LOC102232466,LOC105915781,LOC105011208,LOC106514111,LOC104923823)


Basic Information

Item Value
gene id AMCG00016072
gene name LOC102232466,LOC105915781,LOC105011208,LOC106514111,LOC104923823
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 4600941 ~ 4603273 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016072
ATGTTTACCTTTCCCATTTCCATCTTCTTTTGTATCAAGATTGTAAAGGAGTATGAACGGGCTGTCATATTCCGACTCGGCCACGTCACCTCTGGAAGGGCGAAGGGGCCGGGTCTTTTCTTCATCTTGCCCTGCACTGACTCTGTTGTGAAAGTCGATCTGAGAACAGTCTCCTTTGATATCCCTCCACAAGAGATCCTGACTAAAGActctgtgactgtgtctgtggaTGGAGTGGTCTACTTCAGAGTCCAGTCGGCCATCTCCTCAGTGATCAATGTGAGAAATGCTAACTTCTCCACCCGTTTGCTGGCTCAGACCACTCTGAGGAACGTCCTGGGCACAAAGAACCTGTCTGAGCTGCTCTCTGACCGTGAGGAGATCTCCCACAACATGCAG

Function

NR:

description
erythrocyte band 7 integral membrane protein-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016072 True 399 mRNA 0.50 4 4600941 4603273

Neighbor

gene id symbol gene type direction distance location
AMCG00016073 LOC105011208,LOC102232466,LOC101073007,LOC103140675 coding downstream 18645 4576544 ~ 4582296 (-)
AMCG00016065 vps36,LOC107701118 coding downstream 68678 4518570 ~ 4532263 (-)
AMCG00016062 NA coding downstream 83455 4507463 ~ 4517486 (-)
AMCG00016064 LOC105011210,LOC107718790 coding downstream 110276 4476339 ~ 4490665 (-)
AMCG00016063 NA coding downstream 149086 4443416 ~ 4451855 (-)
AMCG00016071 NA coding upstream 23311 4626584 ~ 4635627 (-)
AMCG00016068 NA coding upstream 40067 4643340 ~ 4664628 (-)
AMCG00016070 NA coding upstream 141996 4745269 ~ 4763349 (-)
AMCG00016069 LOC103044157,LOC107720662,LOC107556867 coding upstream 258212 4861485 ~ 4887805 (-)
AMCG00016075 NA coding upstream 329551 4932824 ~ 5269754 (-)
G10806 NA non-coding downstream 8864 4591820 ~ 4592077 (-)
G10805 NA non-coding downstream 13066 4586723 ~ 4587875 (-)
G10740 NA non-coding downstream 227220 4371465 ~ 4373721 (-)
G10735 NA non-coding downstream 245645 4354853 ~ 4355296 (-)
G10715 NA non-coding downstream 430603 4166778 ~ 4170338 (-)
G10812 NA non-coding upstream 19458 4622731 ~ 4623216 (-)
G10821 NA non-coding upstream 35177 4638450 ~ 4638659 (-)
G10823 NA non-coding upstream 36516 4639789 ~ 4641030 (-)
G10867 NA non-coding upstream 193554 4796827 ~ 4875011 (-)
G10883 NA non-coding upstream 354806 4958079 ~ 4958278 (-)
AMCG00016049 NA other downstream 680438 3886298 ~ 3920503 (-)
AMCG00016046 NA other downstream 1058405 3528842 ~ 3542536 (-)
G10478 NA other downstream 1565758 3034422 ~ 3035183 (-)
AMCG00016029 NA other downstream 1754584 2784125 ~ 2846357 (-)
G10420 LOC101154678 other downstream 1890256 2710399 ~ 2710685 (-)
AMCG00016074 NA other upstream 300583 4903856 ~ 4929900 (-)
AMCG00016110 ufm1,LOC107701138 other upstream 3077638 7680911 ~ 7753437 (-)
AMCG00016119 NA other upstream 3515948 8119221 ~ 8124033 (-)
G11326 NA other upstream 3588273 8191546 ~ 8194432 (-)
AMCG00016134 NA other upstream 4220272 8823545 ~ 8827760 (-)

Expression


Co-expression Network