AMCG00016074


Basic Information

Item Value
gene id AMCG00016074
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 4903856 ~ 4929900 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016074
ATGCCTTTTATGCCTGGCGCTCTTCTCTTGTCTCCCGGGAAGGCCTGCAGCGCCTCTGGATCCACAGAGCTGAGCCACGCTGGCGAGATGGAGACGGCCAAGTTCTACAAGTTTTATGCAATTGCATATGGAGTTATTAGAGACGGGTCGCAGACCTCAcCTTCTTGTTTTCGGGCTGATCCTCTGAGTCGAATGATAGGGAACAGgataataatgtttaaaaaagccAAAAGGGTAAACGTCAGGCGCAGAAATGAGTCAGATGACGAAGAAAAAGACGAAAACCCATTGCCACTGCAGCAGCAGCCATGCGGGCCTGCAGAGGAAACCTGCGAACGAGACGTCGGAGTCATCCATCCCGCAATCAGCCCCGCAAATATAACCGCGTACACGGATGTGCCCCATGGAAATGGACTGCAGAGCAATGCCGGCAAaccaagagagaaagagaaagagaaagagaaggagaaaaagagaagCAAGGAAAGCAAAGACATCCCGAAAGCCAGCTTGCTTAGCTTCCATGATGAGGAAGATGATACAGAagttttcaaagtgaaaaaatcCAACTACAGCAAGAAGATTGTGAAGCAGCTGAAAAAGGAGTATAAGGAAGACCTGGAAAAAACCGGCACAGTGAAACAGGAGCCTAGCACCACAGTAGATGAGCCGGTGACCGTACCAGTCACTGTGAAGGAGGAGCCCAAGACAGAGGGTAGCCTGCCAAGCAGCGAGCAGGGCGAGGAGGAGATGGAAGTGGACAGCAACGTAGACTCCGAGGAGGACCCAAAGACCAGTGGTGCGGGGGCTTTCTCCAGCACCCTGTCATCACTGAGCACATTAAGACCAGGTGAGATTCCCGATGCTGCATTTATTCACGCCGCCAGGAAAAGACGGCAGCTGGCCCGTGAGCTGGGAGACACCCTTCCTGTGGAGACGGAGTCTGGCAAGAACCGCCTGGTGAGGGAGGATGAGCATGATGCCAGCGATGACGAGGACGATGACGAGAAGAGGCGCATCGTGTTCTCTGACACTGTTGTTTGGACAGGCATTGAAGGCAGTGATGACGATGCTCTGGACACCGGAGGCCAGGATGAGGAGCTGAGCCGCTGGGAGCAGGAACAGATCAGGAAAGGGATCAGTATCCCACAGGTTCAAGCCAACCAGCCGGAGGATGTGAATATGTATTACCAAAGTACATACGAATCCTCGTCCTACAGCTCATCATATGGCCTGCCCTACACCTACAGCTCTGTAGGATCAGATGCCTCGAAACCATTAAAATCCGAAAGCTCAGTAACATATTCTGCTCCTAGTAGTGACATGACTCCTATCACTACTGATCTGGTAAAGAAACGCCTTAAAGACAGGTTAAATTCACTGAGACAAGTGCACAGTAGCAATGAAAAACGCTATGACAAAATCCAGCAGGAGCTAGAGGCCTCCGTCAGCATGATAGAGAGACTGGAAGGCTCCTCCGACGGTGTTGCTGACCAGTATAAATTCTTGCAAGAAATGCGAGGGTATGTCCGAGACTTGCTTGAGTGTTTCAGTGAAAAGGTTCCGGTGATTCTTGAGCTGGAGTCTGCAATGCACCAGTTACTTAGGCAGCGGGCGGCTCGGCTGGTCCAGAGAAGACAGGATGATATTAAAGATGAATCATCGGAATTTGCAAGCCATTCAAGTAAGGCTTTAATGGCGCCAAATCTTGATTCTTTTGGTCGTGACCGTGGAGCCTATCAAGAGCATGCTAAACAGAGAAGAATCGCAGAGAGAGAAGCTAGAcgGACGCGGCGCAGACAAGCCAGAGAACAGAATGGGAAGAGAGCTGAGCATCGGGAGGGCTTATCAAGCGATGACGAGGAGACCTCCACTGACATCACCAGCTTCAACTTGGAGAAGGAACGCATTTTGAAAGAATCTAAGAAAGTGTTTGAAGATGTGCTTGAGGACTTTCATTCCTTGGACAATATCAAAGCCAAATTTGAAGTTTGGCGCAGGCtgtatttcaaatgttaccaGGATGCCTACATCGGGCTGTGCTTGCCCAAGCTATTTAATCCACTGGTACGACTGCAGCTCATCCCCTGGTCTCCCTTAGAGGTGTGGGATCCCTTGTCCAGCAGTCAGACCGCGCAGATGGTGGCCTTCATGAATAGGCTGGTCAAGGGCTATCCCACAGTCCTGCACGGGGAAAACCGGAACACACAGCTTTTGGGGAACATTCTTCAGTGGCATGGCATACTGTCTAATACAAGCCTTAAGGAGCTGGCTGTGGACAGCATTGTGAATCGTTACATCCTCTCGGCACTTCAGAACACAGAGCCTGGAGAGGACAGCATTGAGAAAAGCCAGAGTGTCATTAGTTGCTTCCCAAGACAATGGTTTACATGCCTGAAGGGGCAGCAAACAATCCCCCAGCTAGAAAACTTCTGCAGGTATCTGAAACATGTGGCCAGTACAGTGTACAGAGTGAGCCTTGCGGGATCTGATGTGGATAAACGTAATGCCAGGCAAGTAACTGTTCTTTTTGCCCAGGAACATATTAAGGAAGTAGTTAAACTTCTGGGAAGTATTAATGCTCTGGATCATGTGGTGGCTGTGGCCAGCGAACATGGGATAAAGGACGTAAAGGCTTTACTTGAAGGCAAATGA
>TU13478
GGAAAGCTTGGAGGTGAATTTGTGTAtggtctatttaaaaaaaaaaaaaagatgggtCTGCAAACCATGATCTGTGTACTCAAGTGTTGATATTTCagtgattctttttttttttcaaaactttttttatcTTAAGCAAATTTTCAAGTCGGTGTCCAACTATAGGGTTCCAGATTCCTTGTGTACCACTCAGACTCTTGGATTTATGTTTTCCACTATGACAAAGTgcttaaactattaaaatatataagataGAGTAACATAATATTATCCTTGATCACCTCTCCTGACCACCCGCCTTCTTCAAGATTTCCGTATGGCGTTCTTCAGTTTGGTTGTGATGCATTTTACAGTAggcatatataaatgttttgcattgaatttgatttaaattggcCTTATATCGATTAAGGTTCTAATAGAAGTTCCATGCTTATACTATTCATGTTCTGTAATATAGGCTATTCTCGTAATTCTGATTGGCTAATTCATATTCTGTAACTGTAATCATAGTATTAATCTCTACTCAATTGCCCATTTTTAAGGGTCCAGGAATGACATTTTGGCATAATATGCCCACTTTATTTTTGGCCCATCAGCTCCAGAGCCTTTTAcgattattgtttttatgtctgGCATAAACATCCCTCAGatgtttgaaacatttttgcaCTTCCTTTGCTAGAATAACAagacatattaaacatttgtaacaaATACCACAACATTGCTCTTAATTATCTAGAAATATTATGACCACTACTGTTTCGCAACACATGTATCTACCCATGATGATTTAACTAAGCTAGTAGTACAAAATGTAATAGTGTAGTTCTCATTCTGTTACACTAACAAAACACTGAGTTATACATAAAATCGGATGCAATTGCCCTTATTcaatggttatttatttgtgatggtaaatatttatttaggctaaacagaaatgtacatacacatacatcatAAGGTGGGACATTAAAccactgtttacatttttttattgttgggAGAGGGGTTGGCCACTGGTGATGAAAACgatcaaaataatcaaaactaatttttaaatatttgattaaatgcatGTATAGTCACTTATTTACAACAAACCGCCTGTCTTCTATTTTAGCGCTCCGTCAGgaatactgtattaataaatCGCTTGGCAACGGGGTCAGCGATGAGGACAAAGTTCAGTAGATTTGAACTATCAGTGACGTGACCAGCGACTGTCGTTATCGACCAGGGTGACTGTCGCCAGAAAGTATAAACTGTACAGCGACATGACAACGATCGCCGGTCGCTTCGCTCTTCAGCGACGGTCGGGTGCCCGAGTATAAACCGGCCTTAACTTCATTTAATCAGTATTTGATCTTTCTCTCCAATCAAGATAACTGTCATATAGCCAGCTTCCTATTTCTTCTGCTATGAcaattcagtcatttaaattattatttttttaatctgatccTGAAGAACAGTTTAGCCAGATACTTCCATGTTACATTTCTATGTACATGTATCTTATTTACACTGAGGGCTGCTATACAAACTATTTCCAAGATACCAGTCCAGggacttcattattttatagtaTAGTTGTAGTATATTGTATAGTTTCTTCCATTCCAAGACAAAAATAGTGTCTTTGTCCATGTGTAACAATATCTCGTAAGCACCAATGAGATTGATGTGattgacttatttttcttttcttttttttttaccacacaGGGAACATATTAAGGAAGTAGTTAAACTTCTGGGAAGTATTAATGCTCTGGATCATGTGGTGGCTGTGGCCAGCGAACATGGGATAAAGGACGTAAAGGCTTTACTTGAAGGCAAATGAACGTAGTCTTCCATGGACTCCCTAACCTTATTTGTACTGTCTGTATATACTGtgaatatatgtaaaaaataaacggAGCActgttaaatattgttttaaagagaaaaaaggacCTGAGACgcattttatattgtgtagaGTTGACGTGATTCAAGATCTGGTTTTACAACCTGAGAGGAATGATAAGAGAGCTGGAGGGCTGCAATGAAGGACTGAAACATTTTGCAATGGGTGAAATTTAATTTCTGGAGTTGAACCGCTGTATGCACAGAGCATAGGAATTTCACCTTGACCGGGCCAATTCAGCTTTAAACCAAGAAAATGGAAGGATGGGCCCCATCGTATGGATCTTTTGACTCTTTAAAGGGCTGACACCATGCTGATTTAGTAGTTCAGTGGACTACTTCGTGAGCATCGAGTTTGAAGCACAGTGGTTGGGTCTAAGCAGCAGGCTTGCCACTGAGGTAACGGGGTTTGTGATTTGACTTATACATCCATTACCATGACTAGACATGTATGCTGAGTTCATGATTGACAGACTGCACAGAGGAGTTGTATGCCTCTAATTTTAATCAAGATgcagcattgttttaatgtactcCACATCAATGATCAGTTTGTGTGTAATCTTCAAGCATGCCCGCTTTCTTATTCAGTGTTCATTCTTTTCAGTCAACTAATATTTGTGCCAAAAAAGCAAGTACACGTCACTGAAATAATTCatatgcagctttttttttttttttttcctttcttttgaaGAGCAGGATGTGGCAATTTTAATTTGCAGGATTTGTGTACATGTTTTATTGGCTTATTTAATAAACTGATGGTTGAAAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016074 False 2655 mRNA 0.50 17 4904698 4929900
TU13478 True 2694 lncRNA 0.54 2 4903856 4907602

Neighbor

gene id symbol gene type direction distance location
AMCG00016069 LOC103044157,LOC107720662,LOC107556867 coding downstream 16051 4861485 ~ 4887805 (-)
AMCG00016070 NA coding downstream 140507 4745269 ~ 4763349 (-)
AMCG00016068 NA coding downstream 239228 4643340 ~ 4664628 (-)
AMCG00016071 NA coding downstream 268229 4626584 ~ 4635627 (-)
AMCG00016072 LOC102232466,LOC105915781,LOC105011208,LOC106514111,LOC104923823 coding downstream 300583 4600941 ~ 4603273 (-)
AMCG00016075 NA coding upstream 2924 4932824 ~ 5269754 (-)
AMCG00016086 ltn1 coding upstream 1684805 6614705 ~ 6636697 (-)
AMCG00016081 NA coding upstream 1707432 6637332 ~ 6640537 (-)
AMCG00016084 cct8,LOC107693911,LOC107701129 coding upstream 1717407 6647307 ~ 6669012 (-)
AMCG00016087 grik1b,grik1,LOC105006673 coding upstream 1806046 6735946 ~ 6773094 (-)
G10867 NA non-coding downstream 28845 4796827 ~ 4875011 (-)
G10823 NA non-coding downstream 262826 4639789 ~ 4641030 (-)
G10821 NA non-coding downstream 265197 4638450 ~ 4638659 (-)
G10812 NA non-coding downstream 280640 4622731 ~ 4623216 (-)
G10806 NA non-coding downstream 311779 4591820 ~ 4592077 (-)
G10883 NA non-coding upstream 28179 4958079 ~ 4958278 (-)
G10924 NA non-coding upstream 63296 4993196 ~ 5065889 (-)
G10926 NA non-coding upstream 177017 5106917 ~ 5108966 (-)
G10931 NA non-coding upstream 651532 5581432 ~ 5581688 (-)
G10934 NA non-coding upstream 816436 5746336 ~ 5746567 (-)
AMCG00016049 NA other downstream 983353 3886298 ~ 3920503 (-)
AMCG00016046 NA other downstream 1361320 3528842 ~ 3542536 (-)
G10478 NA other downstream 1868673 3034422 ~ 3035183 (-)
AMCG00016029 NA other downstream 2057499 2784125 ~ 2846357 (-)
G10420 LOC101154678 other downstream 2193171 2710399 ~ 2710685 (-)
AMCG00016110 ufm1,LOC107701138 other upstream 2751011 7680911 ~ 7753437 (-)
AMCG00016119 NA other upstream 3189321 8119221 ~ 8124033 (-)
G11326 NA other upstream 3261646 8191546 ~ 8194432 (-)
AMCG00016134 NA other upstream 3893645 8823545 ~ 8827760 (-)
AMCG00016176 NA other upstream 5904512 10834412 ~ 10847811 (-)

Expression


Co-expression Network