AMCG00016077


Basic Information

Item Value
gene id AMCG00016077
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 6372399 ~ 6487517 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016077
atgtatcTTACAGCCCTAAGGGACAACCGGATCGAGCTGGTTCGCGCTTCATGGCACGAGCTGAGCATCAGCATCAGTGACGTGACCCTGTCAGATGAAGGACAGTACACCTGCTCCCTCTTCACAATGCCTGTCAAGACTGCCAAGGCCTTCCTGACAGTGCTAGGAGTCCCCGAAAAACCACAGATTACTGGTTATTCAAAGGCAGCCCGGGAAGGAGATAAGATCACACTGACCTGCATGACCTCCGGCAGCAAGCCCGCTGCCGATATCCGGTGGTTCAGGAACGAGAAGGAGATCAAAGGTGCAAAAGAAGTGAATGCCAGTGGCAAGACCTTTACAGTGAAGAGCACCCTACAGCTTCTGGTTGATCGCAATGATGATGGAGTGGCTTACACCTGCAGAGTGGACCACATTTCCCTGAACTCATCACCGCAGCAAGCCACTCAGTTCGTGGAGGTTCATTgtcTGGAGGGGAAAATTCCCGACCCTGTGCTTTGGACAAAAGATGGACAAGACTTGCCTGACCTTGACAGAATGATCGTCGACGGTAGGGAGCTAACGATTACATCACTAAACAAGACAGACAACGGGACGTACCGCTGTGAAGCCAGCAACAACCTTGGGAAGAGCAGTGCAGAGTacaatttATTTCCCCACCACTATGCTTCCATGTTCAACAACCCCCACCCAAACCACTACAACAGCCACCAGCACAGTACTCTTAGCAAAGAGTGCCTTCACATCAGCAGCCACGAGCATCGTCAGAGGTACGatccCAACGCTCTGAATGAACAGAATGGACCAGACCATGCAGTTATTGGAGGAGTGGTGGCCGTAGTGGTGTTTGTCACCTTGTGTTTAATAATTGTGCTGGGGCGATATCTGGCGAGACATAAAGGGACATATTTAACGAATGAAGCCAAAGGAGCCGAGGACGCCCCTGACGCAGATACAGCCATCATTAACGCAGAAGGCAATCAGGCCAacgcagaggaaaaaaaagaATGGCAACTGTAA

Function

GO: NA

KEGG:

id description
K06782 CADM2, IGSF4D, NECL3; cell adhesion molecule 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016077 True 1020 mRNA 0.51 10 6372399 6487517

Neighbor

gene id symbol gene type direction distance location
AMCG00016076 NA coding upstream 1263407 5048208 ~ 5108992 (+)
AMCG00016066 stoml3b,stoml3,LOC103043838,LOC107556874,LOC108444492,LOC107720596,LOC103140675 coding upstream 1795980 4570191 ~ 4576419 (+)
AMCG00016067 proser1,LOC107556855 coding upstream 1818449 4532324 ~ 4553950 (+)
AMCG00016061 NA coding upstream 1872445 4495818 ~ 4499954 (+)
AMCG00016060 NA coding upstream 1895061 4470062 ~ 4477338 (+)
AMCG00016080 NA coding downstream 182789 6670306 ~ 6679037 (+)
AMCG00016078 NA coding downstream 203236 6690753 ~ 6700886 (+)
AMCG00016092 hunk,LOC106595522 coding downstream 506479 6993996 ~ 7008772 (+)
AMCG00016104 NA coding downstream 559603 7047120 ~ 7053548 (+)
AMCG00016098 NA coding downstream 614684 7102201 ~ 7110849 (+)
G10939 NA non-coding upstream 530578 5841228 ~ 5841821 (+)
G10853 NA non-coding upstream 1459981 4907806 ~ 4912418 (+)
G10794 NA non-coding upstream 1784762 4586548 ~ 4587637 (+)
G10798 NA non-coding upstream 1786913 4585234 ~ 4585486 (+)
G10737 NA non-coding upstream 1994736 4376307 ~ 4377663 (+)
G11021 LOC107718733,LOC107555187 non-coding downstream 248093 6735610 ~ 6744358 (+)
G11052 NA non-coding downstream 465096 6952613 ~ 6956605 (+)
G11067 NA non-coding downstream 502610 6990127 ~ 6990569 (+)
G11069 NA non-coding downstream 503132 6990649 ~ 6990900 (+)
G11098 cunh21orf59,c10h21orf59,LOC107577665,LOC107691672 non-coding downstream 566443 7053960 ~ 7055721 (+)
G10739 foxo1 other upstream 1944340 4427146 ~ 4428059 (+)
AMCG00016030 NA other upstream 3560168 2759347 ~ 2812231 (+)
G10371 LOC105010782,LOC106603266 other upstream 3884648 2485542 ~ 2487751 (+)
G10350 NA other upstream 4059240 2312598 ~ 2313159 (+)
AMCG00016079 NA other downstream 154141 6641658 ~ 6661668 (+)
G10981 cct8,LOC107693911 other downstream 176569 6664086 ~ 6665548 (+)
AMCG00016091 NA other downstream 534630 7022147 ~ 7024851 (+)
AMCG00016103 NA other downstream 782338 7269855 ~ 7302042 (+)
AMCG00016101 trim3b,LOC108423836,LOC103363426,LOC107701140,LOC107720632 other downstream 958933 7446450 ~ 7478586 (+)

Expression


Co-expression Network