AMCG00016079


Basic Information

Item Value
gene id AMCG00016079
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 6641658 ~ 6661668 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016079
ATGGGGAAGAAAAGGGCAAAGGAAAAACACCAGAAAGACGAGGACTCCTTTGACTTGACAGTACCTCGCTGCACCCACATTCGAAAGGGTATAGAGCAGCATCTGCACAAAAAGATTGCACAGGGTGTCCACTGGTATGCCTGCCAGGAGTGTAAGGATGAAGAAACCCTTGAAGCCACATCAGAGGAAGAAAACGGTGAACGCCCAATGATCTGGATATGCCTGAAGTGTGGTCACCGGGGCTGTGGAAGAAACTCTGAAAATCAGCATGCTATTAAGCACTATGAGAAGCCACGCTCAGAGCCCCATTGCTTGGTACTCAGCTTGGACAACTGGATTGTCTGGTGTTACAGTTGTGATGACGAAGTTCAGTATTCCAGCACCGGACAGCTGGCACAGCTTGTGACTTTCATTCGAAAGCAAGCTCTTCCAGAGATAAGCAAGAAAACCCCCAATAAGAcagcagcagctgacgAACAAGAACATGAGCCCAGAGAAGACAAAAAGCCTGAGGAGATCAAGAAAGAGCAAAAGAAGCATGCTAAGGAAGACATGACTGaggcaaaagaagaaaaaacaccagATAAGACCAACAGCACTACAGTGTCTGTTAAAGGACTGAGCAATCTGGggaatacttgtttttttaatgcagttgtaCAGAACCTTTTCCAGACTCAGCCCCTCCGACAGCTTCTCAGTGAGATGAAAGCTGAGAAGACCACAGTCACAATTACCCCAGAAGCGTCCACCGGATTGGAGCCCCTTCTCATCACCTTGAACAGTCCCGGGTCTTTGACACTGGCCATGTGTCAGCTGCTCAATGAAATACAAGAAACCAAGAAGGGTGTAGTGACGCCTAAAGAGCTGTTCTCCCAAGTCTGTAAAAAGGCCGCAAGATTCAAAGGCTTTCAACAACAGGATAGCCAAGAGCTGCTACGCTATCTTTTGGATGGAATGAAAGCCGAGGAGATGAAGAGAGTAAATTCAGGAATTCTGGAAGCTTTAAATCATTGTGGAAACCACACAGAGGCTGAAGAGTTAAAGAAGCTAGTCAAAGAGTATGAAAAGAGTGGGGCACATCTAAACTTCGTGGaccaggtttttggtggagagcTGACAAGCACAGTTATGTGTAAGGAATGCAGAACAGTATCTTTAGTCACTGAGATGTTCCTGGACTTGTCTCTCCCCGTTTCAGATGAAGCTTACAGGAAAAAgaaccagaaaaaaaatgtgaggAAGATCAGTGAGAATGAGGACGATGATTACAAGATGCCTACTGCGTCCGCTAACGGGAAAGAGGACCTTCCCTCTGGCGCTGGCAGCAAATATCAACAAAAGAAGGTGAAGAAACAGGCAAAGAAGCAAGCAAAGATCCAGAGACGTCAGCAGAAACAGGGAGGGAAGATGGAACTTGGCTCCACGGCCCAGCTGGAGTCTGAAGAGCTTCCGAACGGAGTGGAGTCTTCATCTCAAGGAGAGGTCAGCCAGGCAGACCCGGGGGACTCGGCGCAGGGAGAGCCTTGCTCCGACAGCAGCGAACAGGCACAGACCGATAACCCGGAGCCGAGCAACGAAGAGAACAGCGCAAAAGACTGTCAAGACAACCACAACGGCAGCGGCGGCAACGAGCCGAAACCCACAGAAGATGAAACGGGGCAGGGGGACGCCGACGTGCTTCCGAATGGCGATAACCGCTGCGGAACTCTGACTAATGAGAGCGCCAGGGAGGGAGAAATTGTCCAGGATCTACACAACCTGAGGCTGAACGATGCTTTCATATCTCCCGACGATATAGACTTGGAGATCGATGTCAGTGAGGCAGCGGCAGACACTAAAGCTTACGTTGTGGTGAACCAGGACCCAGATTTAGCCTTCAGCACTCTTGCAGTCAGAGCTGCGCCAGGGAAGCAGGAGTGCTCGGTGCAGTCTTGCTTGTTTCAGTTCACTGAAGTGGAACAcctcacaaaaaacaacagcctgCAGTGTGTCACTTGTACTCGGCAGAAGGGCAAAGGAGCTAAATCATCCTCGGATGGTGACAAGAACAGCGTCTACACAGATGCCCTGAAGCAGATGCTGATCTCAAGGCCTCCCCCAGTGCTCACTCTTCATCTGAAAAGATTTCAACAGGTTGGATACGGTGTGTGTAAAGTGAATAGACACGTGCAGTTTCCACAGGTTCTGGACTTGGCTCCATTCTGCACTGTTAACTGCAAGAATATCGCTGAGGGAGAAACGAGGATGCTGTACAGCCTCTATGGGATAGTGGAACACAGTGGCACGATGAGGTCCGGTCACTACACGGCCTATGTCAAAGTGCAACCGAAGGACTACCTTTCGAAGCATTTGAATGGATTGAGTCCGCAAGTGAATGATGCTGAATTGGTCAAAGGCTCCTGGTTCCATATAAGTGATACAAGTGTCCAGGCTGTGCCCGAGACTAAAGTGCAGAACTCGCAAGCCTACCTCCTCTTCTATGAGAGGATACTCTAA
>TU13602
TCGGGTTTTAAAGAAACAAGCCTTTCGTTTTGACACACAGTTTTATGTTTCCGGTTTTTGAAATGGTTTGTATTACTAATCTATGTAGTATTTGGATCGGAtggttcttttatttattaaacggCGCACGTAAGTGCTTGAAAGCTGTTCACTGAGAGCTGCTTCACTCTGTGATAAACGCTGTGAGGGAACGGTCGACCTCTACATTAAGTGAATGCAAAGCAAACTTGTAATCATTGTTGGATACGGTGTGTGTAAAGTGAATAGACACGTGCAGTTTCCACAGGTTCTGGACTTGGCTCCATTCTGCACTGTTAACTGCAAGAATATCGCTGAGGGAGAAACGAGGATGCTGTACAGCCTCTATGGGATAGTGGAACACAGTGGCACGATGAGGTCCGGTCACTACACGGCCTATGTCAAAGTGCAACCGAAGGACTACCTTTCGAAGCATTTGAATGGATTGAGTCCGCAAGTGAATGATGCTGAATTGGTCAAAGGCTCCTGGTTCCATATAAGTGATACAAGTGTCCAGGCTGTGCCCGAGACTAAAGTGCAGAACTCGCAAGCCTACCTCCTCTTCTATGAGAGGATACTCTAACTGACATTCAGGGGATACGACACAGAGGACTTGAGTTGCTTTGGTGACAGTGGGGTTACATGGCATGGCAGAACACTATACTGTTTCTACTATTGGATATGAAATGTATCCATACTTATCTGAGACGCATCAAATAGTGTGACACTGCTAAAGCACGGGGGCAGCCAAAATACAAATCCTTTGATGCATTCCGCTGCTTCAAACTCTTAAAGTGATTTTAGCAGCATTAACTGTGCATACACAAGCTTCCTAAGTGATTGCAGAAGGGAAAGTACTTTCATAGGAATCTGTTctggcaaattaaatgtattatgcttttcAATACAAAGGGGAACATGTAAAATAGCTAGTGTGGCAAGATCTACAGACTAAAAAAGCATTTAGCATGCTGACCTTGTTATGCACAATTAATTCTGCTAATGtgcatgttgttgtttgggAAAGGAACATGATGCATTAGGTAAAGTAATAGTTAccctgtatgtatatttaaaatgttataatttataaaaccaTTAAGGTAGGTAATTTGAATCAATTTCCAAataggaaaaaacatttgtatgaaatatgaaaagatttatttctgtaatattttatataacatggccaaaacaattaaaaaacacatgttttttaatacttgtggACTGTTGATTACTTActttcaggttgtaacaacaaaatgtgaaacattCCACTTATAGCCTATAGCCACTGTTATATTAAATCTTGGATGAACCCAATTTTTCTTTGATGGGACTGTGACCAGATAGTAGTCTTTATTGGGTTTTCCTTCTCAGCTCCATAAACAAATGCTTAAAATCTGGCATTCTTAATGATTGTTGCACTAAAATTCTAAATGTGGGAGTAATTTTCAAGCCTTGTCCaatttcagatttacataaaaTAGTACCAAGATGCCTTTTTCCATCTTATAACCTGACTGACCCAACCTTACCAGTCACTGTTTCAGAAACTATCATGCTTGTCTCTtcacatattcatattttaaacaaatttgatGTTAAATCAACTTTTAACCCTATATAAATACTTTCTAAAGCTTGTGTAAAAGTAAGATAGTTTAGctgtattttaaactatatagatcaggggttcccaatgtgcGGTCCTGGGGCCAAGTGtggccctcaaggatgtttgggGCGgtcccccaaagccaaccttcaacccccccttttctgaacctttactatatttttacactttctgaaaatgttctgttacaaattgcacatgtaatttggggaaaaataaGTTCTAAATGTTCCCTGACAAacgtataggaaataaaaaggtatgatttgggaccaatttaattttcatctgtggttcattttctactgtggctcccatcccatgcaacctccggaaattgaCCCTCCATCAACAGATATTGGGAACCGCTGATATAGATACTTGTACTACAACTCTCAAAATAGTAGTAGGAAAATAGAGTAGGAAATGTCTAATGTAGctgaagaaatgaaaatgacacaTGAGCTGCACAGGTTGAAGgtacatttttttcagttgttatATAAACCTGAGCAACATAATGTAGCGATTCAGAGGGGCAAATAACTGAACatactttaaaagaaacaaggTAAAGGGACTGGACAATGCATTAGTGATACTGTCCAAATCCTTGGCCTGCTCTTTTTGTCCATTATTGAATTATGGGATTTCAAAGTcctaatttaattacataagaTTTTAGGTTTGCTCACATGCATCCAGGGGAGGTGTCATAGGCTCATTGGACATTTCTTGCTGCTGCAGAATTATTTAATACATCAGCCttttttacattgattttgttttacttaggAAGATCttagaatacaaaatatattaataaatatgagTAAGGGTCCTTAATTCTGTTTTACTGCAGGCTTGTTCTGAAATTCAAGAgcaatcatttcaaatatttctttagcaggagaaaaacaacaccGAAGGAAATACATTCATGAAAGACAGAGTAGGGCCACATTCAGGCATTTCAGTTGACTTTTTCACTTTTAGACATCTGCTAAACAACCTAAAATATAACTTGAGCCACCTGTGGTATTgggttgtgtgacaaaactgctcattttagagtggccttttattggccccagcacaaggtgcacccgtggtttaatcagcttcttaaTCCATCCACCTCAGAAGTGTGGCAGATCATCTTGCAAAAGCAGAAATGATCACTGACAGGCATGTAAACAGATGTGTGCATAGAATTGAGTGCAATTTGCAAGATTCCTGGgatctttaatttcagctcatgaaacacgggacatgtttatattttttgttcagtttatggCAGAAAGTCACATTAAAGAAGCCAAAAACCAACCCTGACAGCTCAAGTGCCTTTTattgggagggaaaaaaaaaaaaaaaatgaaagagccAGCCTTTAGAGCTTCATATCACAATGCATGGTTTTGTCCAAGAAACATGAACAGCAGGAAGTACATCAGATTAAATAAGAGGCAAACAAAAAAGGACTGTTAAATCAGTTGGTTTGTGTCAGTCCAAGTATAAACAAGGTCAACAAAGGGAGAGAAACTAGGAAGATCTTAATCTTGGTCTTCATCCCAGTCTTTCTTTCCTTGTGGGGCTTTGGGCCCACCTGCTGGTTTGGCCATGATGATCTGTGAAGACAAAACCCACATTACTGCATTGTTCACAAAAGGTAGCAGGCAGACACAAGCGCTGAGGAATCCAA

Function

GO:

id name namespace
GO:0000922 spindle pole cellular_component

KEGG:

id description
ko03040 Spliceosome
ko03013 Nucleocytoplasmic transport
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016079 False 2499 mRNA 0.49 17 6641658 6658898
TU13602 True 3371 TUCP 0.62 4 6654712 6661668

Neighbor

gene id symbol gene type direction distance location
AMCG00016077 NA coding upstream 154141 6372399 ~ 6487517 (+)
AMCG00016076 NA coding upstream 1532666 5048208 ~ 5108992 (+)
AMCG00016066 stoml3b,stoml3,LOC103043838,LOC107556874,LOC108444492,LOC107720596,LOC103140675 coding upstream 2065239 4570191 ~ 4576419 (+)
AMCG00016067 proser1,LOC107556855 coding upstream 2087708 4532324 ~ 4553950 (+)
AMCG00016061 NA coding upstream 2141704 4495818 ~ 4499954 (+)
AMCG00016080 NA coding downstream 8638 6670306 ~ 6679037 (+)
AMCG00016078 NA coding downstream 29085 6690753 ~ 6700886 (+)
AMCG00016092 hunk,LOC106595522 coding downstream 332328 6993996 ~ 7008772 (+)
AMCG00016104 NA coding downstream 385452 7047120 ~ 7053548 (+)
AMCG00016098 NA coding downstream 440533 7102201 ~ 7110849 (+)
G10939 NA non-coding upstream 799837 5841228 ~ 5841821 (+)
G10853 NA non-coding upstream 1729240 4907806 ~ 4912418 (+)
G10794 NA non-coding upstream 2054021 4586548 ~ 4587637 (+)
G10798 NA non-coding upstream 2056172 4585234 ~ 4585486 (+)
G10737 NA non-coding upstream 2263995 4376307 ~ 4377663 (+)
G11021 LOC107718733,LOC107555187 non-coding downstream 73942 6735610 ~ 6744358 (+)
G11052 NA non-coding downstream 290945 6952613 ~ 6956605 (+)
G11067 NA non-coding downstream 328459 6990127 ~ 6990569 (+)
G11069 NA non-coding downstream 328981 6990649 ~ 6990900 (+)
G11098 cunh21orf59,c10h21orf59,LOC107577665,LOC107691672 non-coding downstream 392292 7053960 ~ 7055721 (+)
G10739 foxo1 other upstream 2213599 4427146 ~ 4428059 (+)
AMCG00016030 NA other upstream 3829427 2759347 ~ 2812231 (+)
G10371 LOC105010782,LOC106603266 other upstream 4153907 2485542 ~ 2487751 (+)
G10350 NA other upstream 4328499 2312598 ~ 2313159 (+)
G10981 cct8,LOC107693911 other downstream 2418 6664086 ~ 6665548 (+)
AMCG00016091 NA other downstream 360479 7022147 ~ 7024851 (+)
AMCG00016103 NA other downstream 608187 7269855 ~ 7302042 (+)
AMCG00016101 trim3b,LOC108423836,LOC103363426,LOC107701140,LOC107720632 other downstream 784782 7446450 ~ 7478586 (+)
AMCG00016136 NA other downstream 2406613 9068281 ~ 9089033 (+)

Expression


Co-expression Network