AMCG00016080


Basic Information

Item Value
gene id AMCG00016080
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 6670306 ~ 6679037 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016080
CGACTGACAGACAGAAGCACGCTGCAAACATTCTCCTGCTGCCAAAcactttgtgtttgtcttgCAGGCTGTCCTGGTGGGAATACGCTAGGGAGGGAGTTGACAGTGTACAGTGAAGAGCATGCTTAGGGTTCCCTGTGAGGACTTTTCTCTCTAAGCACCATAGTGATTGCCAACAGGCTTCGCCCACAAAAGGAgaagaaacacaacacacagcacaagagGAGACAAAAGGCACTCTGGGAAAAAAGGCAGGTAGCAGCAGTATGCTATcctaactgttttttttctgagcACTGGGACCAGCTGTGTAGCAGGTGCCGTGTTATTGTCAACTCCTTTGTGTCTGTGGCTGAGAAAACGACACGCAAGTTTGGCCCTAGTTTCAACTCATCCTGCAACTTATTTCACAAAGGGATAAATGATCACCACAACAAGGCGAGTATCTCCCGAGAAACCAGAAGTCAGAATAGCCTTCAGCCTAAATGATTCCAGAGAGTTGAAAGATGCTGAAGACTCTCCTTTCCCATCTTCCTTTCCAGAACTTGAGCAGCAGTTACAAcCATTGCCTCCATGTCACTCATCAACGGAGTCTATGCAAGTCTACAAGGACCACTGCAAAATGGCTAAGGAGTTCCATGATGTCAAAAAAGAGATTGCTCTGCTGGAAGAGCGCAAGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016080 True 682 mRNA 0.47 4 6670306 6679037

Neighbor

gene id symbol gene type direction distance location
AMCG00016077 NA coding upstream 182789 6372399 ~ 6487517 (+)
AMCG00016076 NA coding upstream 1561314 5048208 ~ 5108992 (+)
AMCG00016066 stoml3b,stoml3,LOC103043838,LOC107556874,LOC108444492,LOC107720596,LOC103140675 coding upstream 2093887 4570191 ~ 4576419 (+)
AMCG00016067 proser1,LOC107556855 coding upstream 2116356 4532324 ~ 4553950 (+)
AMCG00016061 NA coding upstream 2170352 4495818 ~ 4499954 (+)
AMCG00016078 NA coding downstream 11716 6690753 ~ 6700886 (+)
AMCG00016092 hunk,LOC106595522 coding downstream 314959 6993996 ~ 7008772 (+)
AMCG00016104 NA coding downstream 368083 7047120 ~ 7053548 (+)
AMCG00016098 NA coding downstream 423164 7102201 ~ 7110849 (+)
AMCG00016102 dchs1,LOC103363423,LOC105909256 coding downstream 508148 7187185 ~ 7190116 (+)
G10939 NA non-coding upstream 828485 5841228 ~ 5841821 (+)
G10853 NA non-coding upstream 1757888 4907806 ~ 4912418 (+)
G10794 NA non-coding upstream 2082669 4586548 ~ 4587637 (+)
G10798 NA non-coding upstream 2084820 4585234 ~ 4585486 (+)
G10737 NA non-coding upstream 2292643 4376307 ~ 4377663 (+)
G11021 LOC107718733,LOC107555187 non-coding downstream 56573 6735610 ~ 6744358 (+)
G11052 NA non-coding downstream 273576 6952613 ~ 6956605 (+)
G11067 NA non-coding downstream 311090 6990127 ~ 6990569 (+)
G11069 NA non-coding downstream 311612 6990649 ~ 6990900 (+)
G11098 cunh21orf59,c10h21orf59,LOC107577665,LOC107691672 non-coding downstream 374923 7053960 ~ 7055721 (+)
G10981 cct8,LOC107693911 other upstream 4758 6664086 ~ 6665548 (+)
AMCG00016079 NA other upstream 8638 6641658 ~ 6661668 (+)
G10739 foxo1 other upstream 2242247 4427146 ~ 4428059 (+)
AMCG00016030 NA other upstream 3858075 2759347 ~ 2812231 (+)
G10371 LOC105010782,LOC106603266 other upstream 4182555 2485542 ~ 2487751 (+)
AMCG00016091 NA other downstream 343110 7022147 ~ 7024851 (+)
AMCG00016103 NA other downstream 590818 7269855 ~ 7302042 (+)
AMCG00016101 trim3b,LOC108423836,LOC103363426,LOC107701140,LOC107720632 other downstream 767413 7446450 ~ 7478586 (+)
AMCG00016136 NA other downstream 2389244 9068281 ~ 9089033 (+)
G11509 NA other downstream 2420383 9099420 ~ 9100036 (+)

Expression


Co-expression Network