AMCG00016082


Basic Information

Item Value
gene id AMCG00016082
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 6847806 ~ 6861382 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016082
AGCACTGAGCAGGTGGCAGCATTCTGCCGCAGTCTTCATGACATGAATCCCTCCGAATCCTCGCCACAGAGCCCAGACTCCTCCAGCCCTCCTCCTGCCACCCAGCGCCAGCTCTCCGATGCGGACAAGCTACGGAAAGTCATCTGCGAACTGGTGGAAACCGAGAGGACCTACGTCAAAgATTTGAATTGCCTAATTGAGAGGTATTTAACACCTTTGCAGAAGGAAAGCTTTCTAACGCAAGATGAGCTTGATGTGCTTTTCGGGAACCTAGGAGAAATGGTGGAATTCCAGGTGGAGTTCCTTAAAACTCTTGAGGATGGGACAAGACTGGTTCCAGATTTGGAGAAACTTGAAAAAGTTGAGCAGTTTAAGAAAGTCCTCTTCTCTCTCGGGGGATCCTTCCTGTATTATGCAGACCGATTTAAGATCTACACTAAAACGGATCCTGATTTCAAAGCTTTCCTGGATGCCCGGAACCCTAAACAGCAGCACTCCTCCACCCTGGAGTCTTATCTGATCAAGCCCATCCAGCGAGTGTTGAAATACCCACTCCTGCTGAGGGAGCTGTACTCGCTGACGGACCCCGAGAGCGAGGAACACTACCACCTGGACGTTGCCATGAAAGCCATGAACAAAGTCGCGAGTCACATCAACGAAATGCAGAAAATCCACGAAGAATATGGAGCTGTGTTTGACCAGCTGATTGCAGAACAGACTGGCGATAAAAAAGAGGTTGCCGATCTATCGATGGGTGATTTACTGCTTCACAAGACGGTAGTCTGGATAAACCCTCCTGCCTCCTTGGGAAAATGGAAGAAGGATCCAGAGCTTGCAGCATTTGtcttcAAAACTGCTGTTGTATTTGTGTACAAGGATTGCCccaagcaaaagaaaaaaataGGTGCATCTCACCGAGCCTCCATTGCCGATGAGAAAGACCCCTTCAGGTTCCGCCACATGATTTCCACTGATGCTCTTCAAGTGCGGCCACTTGTCAGCACAGATGCAGAGGGGTCAGCAATGTGTGAGGTGGTGCACGTGAAATCGGAATCAGAAGGGAGACCAGAGAGGACGTTCCATCTGTGCTGCAGCTCTCCAGAGGACAAGAAAGACTTTTTGAAGAACGTCCATTCTATTCTGCGGGATAAACAACGGAGGCAGCTTCTAAAAACGGAAAGCTTACCCCCGAACCAGCAATATGTTCCTTTTGGAGGAAAACGCTTGTGTGCTCTAAAAGGTGCAAGACCTGCAATGAACAGAGCAGTGTCTGCTCCTACCAGGACTCTGGCAAGGAGAAAGTTGGTCAGGAATCGGTTCACCATTGACACAGACATCGTGTTTGACGGCACCCCGGCCAAGGAGCCCCCACCCCAGCAGCCCGTCCTGGCCGCCGACACAGACCGCTGGGTCGAGGAGCAGTTTGACCTGGGGCAGTACGAGGACCAGGAGGAGGTGAAGGAGACCGACATCCTTAGCGACGACGACGAGTACTGCGAATCGGTGAAAGGCCCGTCCTCGGAGCAGGACCTGAAAGCCCCCATGAAGGCGCTTTCTCTGGAGGAGGATGGTGAGCGCGAGGAGGTATCACAGAAGATGGCGGAGAACTCCCATGCGGTCAAACTGGCCCACCTCAAGAAACAGTGCGCTGTGTCTGGACTAAATGGGACTGTGGAGAACAGCAGCGAGGAGGTCATTTGGGTGCGCAGGGAAGACTTTGCGTCCAGTCGGAACAGCAACATCTAAACGCGAGGGCGGACGTCTCGAGCAAAAACGTGGTGCCTTGCTCACAAAGCTTTAAATGGCATTCATTGAAACAACGTCAAGATTTAAAAAGCCTGCTTTCAGTCATTCCAGCTAAATGTTATTTTCGAAACCAACACTGGCATCATAAAACAATTTATGAAAAAAAGGCACTCTTCAATAAAATCCAGgtctaaaaacatttttcttcagaACAGTCTAGACCTCCTAAGTTATATAGATCTTATTAAGTCTCTTCTAAATGTCTGctgaaaatcaatttaaagCTTTGCGAGAAGGACCCTGACTGTACAATCATAAATGTTTGCTAGTCATGTTTTCTGGACGGGCAAGGTTTGCACATGGACTTGGGCAGCTACACCATTTGGACTGCATTTTGTTgccaaatttatattttcaaaggaGGAATCTGGGTATTTTCGAAGAGAGGCTTTCAGAAGATGTATTATACTAAGGGctttatgttatttattctgTTGATCAGGGGTTCGGAGTAAATTATagtgtaaaatattttcagCTTCATATCTTGCAAAGTTACTGTATTTGTACATTGTATGACTGCTACAAACTGAGTTTTAGAGCACAAAAAACctacttttatttaatgtccTTCAAGTCCAGCCTGGAGAACCTCTGGCTTTAACATATCtgacttttttaatttaatattattttatagcaGCCTGAGTGTTACGTTAAAGTGCGGTTTACATATCACATCAAGCTTTCCAGTATTAACAGACCCTCTTCACTGAGGATaggactgttttttttgttttgttttgtttctttaaatccCTTGTTTTACTTGAATTTAAATATTCCATAATCTTACTAGACCcctaagaaaatgtaaaatgcacagtGTTACCATATTGGGATAGAAATTTTTTCTCCAGAAAGGTTACATACAGATCTATGATTGCTTCTGTGATGCTCGTTGCTAGTCCACTgattatacaaatacacagtgtCTGTTACAAGTCAGTGCACATTTTCTTCTGGTAACTAAACTGCACTTTGACAATCTTAATACATCATTATATATTCATGCAAGATAAAACGTGAACAAAAAAATGTGAGGCCTTTAAGTACATGCAagaacttttttctttcttaagattagatttgtttagtttacCACGGCAGATTTAAAAAgcaagagtgagagagaagagggttttttttttttttttttaatgaaaaaatccCTAGAATCATGAATTGTGAACAAGGTCTGCTGTGCGAAGTGATATCAATATTGAGCGGTCAGTTTAGAGGAAGGTGTGGAAAACTCTTAAACTGTAATGCTTATTCTAAAAGGATTTAGAGGACAACTTTGAAAGCTTTTTGCTCTATTCAAAGAAGGTGCTCCAGTTTTCATTACTcccaataaacaaaaatattatgtttacctgataaagaaaaatacattttccttgcCATGTATTGTGAATGAATAAACGTTTACAGTTGCTTTCAGATTACAGGGATCAGATTTCAGTCTAGAGCAAAAAGCTTTGCAAATCTCCCTCTGCATTTTTAAACCTGGGACAATGCGGCTCTGTAAACATATTATGTAAAGTATCATTTTCATAATGCAAACTTTGATGAatttgccctgtaatgtgtatattttggttTTACTGTAGAGGTGTtggttattttatgttattaccTTTTTAAAGCTGCTACTTCTAGTTTCGCGAGTCTGATATAGTCTTATTTGCAGTCAGCGGTGGaatcttttttaaaaataagattttattttgcttaatcCTTAGTCagtgtatataaaatgtgttcagGAACAGTAGAACATAGAGCGACCTGTACTTCTTATCAGATAACTACTTTCAACACCCTGGGTTTGTCCTTTACTATAAATCTGCTGATGCATGTTGCCATTTAGGTCTGTACATACACACGTCACTTCTCTAAGACAAGTCAAGGGGTTCTTAaaagatttctttttttttttttatatgccaaaagaaaagtatattttttatgtttttaggaTTACTGTTTGGAAAAAGTTGTAAATGCCTGTCcataaagaacaaacaaaacaaaaaaaaactaaataaagggAAAGTAGTATCACGGTGAAAGTTATTTTCAAGTGCAGAATTTTGCTTAATCGGCTGCATGGTTACTTGACATATCAGAATATTTGCACAAAGTCTTGGTAGGCTCACGGGATGCATTTTCTGCTGCACCTGATGCCATATTGTTTCGGGAAAACAGATGTTCCTTTAGCAGTGTTTGGAAGCGCTGATTGTTTGCTCCCAATTATGTCAGAGAAGATACAAAGTGGAATGCCCAGGAAAATTGGCATGATGGCGAAAACCAGCTCAGGGAAGAGGGCCtaggttttatttctttttgacACCATTTAACTCAATACCCATCTTAATCCGTATTTTCAAGTACCCCAAATCTCAACTCCAACCCTATAGCATTCCCCTCCATATCAACCCTCCATTTGTCCGTTTGTGCCGTAACTCAAGGTGATTGCCAAGTTGGGGTGGATGCTTTTTTTGGTTACTCAGACTTGtccccatttaaaaaaaaaaaaaaaaacgggacAGTTTTAATGATCACATGAGTAGTGGGTGTGAACTCTGATCCGTGAAAGACTATCTGTGAAATATTGTAGCAGTAatgtttacagtatatatattttttttaatcacgtGTGCATATTGTATAACAATAAAGAACAGACTGGACGATGATGACTGG

Function

GO: NA

KEGG:

id description
K05731 TIAM1; T-lymphoma invasion and metastasis-inducing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016082 True 4515 mRNA 0.41 12 6847806 6861382

Neighbor

gene id symbol gene type direction distance location
AMCG00016090 NA coding downstream 14215 6831122 ~ 6833591 (-)
AMCG00016089 NA coding downstream 18284 6816726 ~ 6829522 (-)
AMCG00016083 LOC106581501,LOC107558811,LOC105006673,LOC107670116 coding downstream 60297 6783537 ~ 6787509 (-)
AMCG00016087 grik1b,grik1,LOC105006673 coding downstream 74712 6735946 ~ 6773094 (-)
AMCG00016084 cct8,LOC107693911,LOC107701129 coding downstream 178794 6647307 ~ 6669012 (-)
AMCG00016085 NA coding upstream 14064 6875446 ~ 6897876 (-)
AMCG00016088 sod1 coding upstream 91230 6952612 ~ 6958966 (-)
AMCG00016094 scaf4 coding upstream 98665 6960047 ~ 6989921 (-)
AMCG00016093 NA coding upstream 154580 7015962 ~ 7020428 (-)
AMCG00016095 NA coding upstream 163720 7025102 ~ 7045994 (-)
G10956 NA non-coding downstream 624577 6222863 ~ 6223229 (-)
G10952 NA non-coding downstream 957890 5889588 ~ 5889916 (-)
G10940 NA non-coding downstream 1006102 5841477 ~ 5841704 (-)
G10935 NA non-coding downstream 1096472 5750918 ~ 5751334 (-)
G10934 NA non-coding downstream 1101239 5746336 ~ 5746567 (-)
G11215 NA non-coding upstream 758316 7619698 ~ 7619997 (-)
G11216 NA non-coding upstream 759258 7620640 ~ 7620853 (-)
G11243 NA non-coding upstream 1011035 7872417 ~ 7872769 (-)
G11247 NA non-coding upstream 1105689 7967071 ~ 7967305 (-)
G11288 NA non-coding upstream 1232418 8093800 ~ 8095204 (-)
AMCG00016074 NA other downstream 1917906 4903856 ~ 4929900 (-)
AMCG00016049 NA other downstream 2927303 3886298 ~ 3920503 (-)
AMCG00016046 NA other downstream 3305270 3528842 ~ 3542536 (-)
G10478 NA other downstream 3812623 3034422 ~ 3035183 (-)
AMCG00016029 NA other downstream 4001449 2784125 ~ 2846357 (-)
AMCG00016110 ufm1,LOC107701138 other upstream 819529 7680911 ~ 7753437 (-)
AMCG00016119 NA other upstream 1257839 8119221 ~ 8124033 (-)
G11326 NA other upstream 1330164 8191546 ~ 8194432 (-)
AMCG00016134 NA other upstream 1962163 8823545 ~ 8827760 (-)
AMCG00016176 NA other upstream 3973030 10834412 ~ 10847811 (-)

Expression


Co-expression Network