AMCG00016084 (cct8,LOC107693911,LOC107701129)


Basic Information

Item Value
gene id AMCG00016084
gene name cct8,LOC107693911,LOC107701129
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 6647307 ~ 6669012 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016084
CGCACCGGCTCTTTCTCTCCGGCGCAGGGTTAGCGGAACAGCGCAGACATGGCTCTTCACGTACCGAAAGCTCCGGGCTTTGCCCAGATGTTAAAGGATGGTGCTAAGCACTACTCGGGGTTGGAAGAGGCCGTCTACCGGAACATTCAGGCCTGCAAGGAACTGGCACAGACCACACGCACTGCCTACGGCCCAAATGGCATGAACAAAATGGTCATCAACCATTTGGAAAAGCTCTTTGTCACCAATGATGCTGCTACTATTCTACGTGAACTTGAGgTTCAGCACCCGGCCGCTAGAATGGTCGTGATGGCATCGCACATGCAGGAACAGGAGGTTGGGGACGGGACCAACTTTGTGTTGGTGTTCGCAGGGGCTCTGCTGGAACTGGCTGAGGAGCTTCTGAGGATGGGGCTCTCCGTATCTGAGgtGATTGAGGGCTATGAAATGGCATGCAAGAAAGCTCTGGAAATTCTTCCAGAATGTGTTTGCTGCTCAGCCAAGAACCTCCATGACTTGGAAGAGTTCTGCTCATTGTTTAATGggaacatgttttcttttgcagtttCTATCTTTCCTGAATCTGGTAACTTCAGCGTGGACAATGTCAGAGTGTGTAAGATCTTGGGCTGTGGACTGTCTGCCTCCTCAGTTCTGCATGGAATGGTGTTCAAGAAAGAAACCGAAGGCGACATCACATCTGTCAAAGATGCAAAGATTGCAGTGTTTTCCTGTCCATTTGACTGTATGATTATGGAGACGAAGGGAACGGTTTTGATAAAAAATGCAGAGGAGCTGATGAACTTCAGCCAGGGAGAGGAGAACATGATGGAGGCTCAGGTCAAAGCCATCGCCGACACAGGAGCGAATGTGGTGGTGACGGGAGGCAAAGTGGCAGACATGGCCCTGCACTATGCCAACAAGTACCAGCTAATGGTTGTGAGGCTAAATTCTAAGTGGGATTTAAGAAGATTGTGCAAAACTTTGGGAGCTGTTGCCCTGCCCAGATTGacGCCACCCACCCCTGAGGAGATGGGGCACTGTGACAGCGTGTACCTGAACGAGGTTGGCGACACCCAGGTGGTTGTCTTCAAACATGAAAAAGAGGATGGTGCCATCTCTACACTCGTCATCCGAGGCTCAACGAACAACCTGATGGACGATATTGAGCGGGCAGTGGACGATGGAGTCAACACATTTAAAGTTCTTGTACGGGATAAGCGTCTCATGCCAGGAGCTGGTGCAACCGAGATTGAACTGGCCAAGCTGCTCACTTCTTATGGAGAGTCCTGCCCAGGCCTAGAACAGTACGCCATTAAGAAGTTTGCAGAGGCCTTTGAATGTGTGCCCCGTGCTCTGGCAGAAAACTCTGGAGTGAAGGCCAATGAGCTCATCTCCAAACTGTATGCGGTGCATCACGAGGGGAACAAAAACATTGGTTTTGACATCGAGGGTGAAGGTGCTGCCGTGAAAGACATGTTCGAAGCTGGCATCCTGGACCCTTACCTTGTGAAGTACTGGGGAATCAAAATGGCCACCAACGCAGCCGTGACAGTGCTCAGAGTTGACCAAATCATCATGGCCAAACCAGCAGGTGGGCCCAAAGCCCCACAAGGAAAGAAAGACTGGGATGAAGACCAAGATTAAGATCTTCCTAGTTTCTCTCCCTTTGTTGACCTTGTTTATACTTGGACTGACACAAACCAACTGATTTAACAGTCCTTTTTTGTTTGCCTCTTATTTAATCTGATGTACTTCCTGCTGTTCATGTTTCTTGGACAAAACCATGCATTGTGATATGAAGCTCTAAAGGCTggctctttcattttttttttttttttccctcccaatAAAAGGCACTTGAGCTGTCAGGGTTGGTTTTTGGCTTCTTTAATGTGACTTTCTGccataaactgaacaaaaaatataaacatgtcccgtgtttcatgagctgaaattaaagatcCCAGGAATCTTGCAAATTGCACTCAATTCTATGCACACATCTGTTTACATGCCTGTCAGTGATCATTTCTGCTTTTGCAAGATGATCTGCCACACTTCTGAGGTGGATGGAttaagaagctgattaaaccacgggtgcaccttgtgctggggccaataaaaggccactctaaaatgagcagttttgtcacacaacccAATACCACAGGTGGCTCAAGTTATATTTTAGGTTGTTTAGCAGATGTCTAAAAGTGAAAAAGTCAACTGAAATGCCTGAATGTGGCCCTACTCTGTCTTTCATGAATGTATTTCCTTCggtgttgtttttctcctgctaaagaaatatttgaaatgattgcTCTTGAATTTCAGAACAAGCCTGCAGTAAAACAGAATTAAGGACCCTTActcatatttattaatatattttgtattctaaGATCTTcctaagtaaaacaaaatcaatgtaaaaaaGGCTGATGTATTAAATAATTCTGCAGCAGCAAGAAATGTCCAATGAGCCTATGACACCTCCCCTGGATGCATGTGAGCAAACCTAAAAtcttatgtaattaaattaggACTTTGAAATCCCATAATTCAATAATGGACAAAAAGAGCAGGCCAAGGATTTGGACAGTATCACTAATGCATTGTCCAGTCCCTTTAccttgtttcttttaaagtatGTTCAGTTATTTGCCCCTCTGAATCGCTACATTATGTTGCTCAGGTTTATataacaactgaaaaaaatgtacCTTCAACCTGTGCAGCTCAtgtgtcattttcatttcttcagCTACATTAGACATTTCCTACTCTATTTTCCTACTACTATTTTGAGAGTTGTAGTACAAGTATCTATATCAGCGGTTCCCAATATCTGTTGATGGAGGGtcaatttccggaggttgcatgggatgggagccacagtagaaaatgaaccacagatgaaaattaaattggtcccaaatcatacctttttatttcctatacgtTTGTCAGGGAACATTTAGAACttatttttccccaaattacatgtgcaatttgtaacagaacattttcagaaagtgtaaaaatatagtaaaggttcagaaaagggggggttgaaggttggctttgggggacCGCcccaaacatccttgagggccaCACTTGGCCCCAGGACCgcacattgggaacccctgatctatatagtttaaaatacagCTAAACTATCTTACTTTTACACAAGCTTTAGAAAGTATTTATATAGGGTTAAAAGTTGATTTAACatcaaatttgtttaaaatatgaatatgtgaAGAGACAAGCATGATAGTTTCTGAAACAGTGACTGGTAAGGTTGGGTCAGTCAGGTTATAAGATGGAAAAAGGCATCTTGGTACTAttttatgtaaatctgaaattGGACAAGGCTTGAAAATTACTCCCACATTTAGAATTTTAGTGCAACAATCATTAAGAATGCCAGATTTTAAGCATTTGTTTATGGAGCTGAGAAGGAAAACCCAATAAAGACTACTATCTGGTCACAGTCCCATCAAAGAAAAATTGGGTTCATCCAAGATTTAATATAACAGTGGCTATAGGCTATAAGTGGaatgtttcacattttgttgttacaacctgaaagTAAGTAATCAACAGTccacaagtattaaaaaacatgtgttttttaattgttttggccatgttatataaaatattacagaaataaatcttttcatatttcatacaaatgttttttcctatTTGGAAATTGATTCAAATTACCTACCTTAAtggttttataaattataacattttaaatatacatacagggTAACTATTACTTTACCTAATGCATCATGTTCCTTTcccaaacaacaacatgcaCATTAGCAGAATTAATTGTGCATAACAAGGTCAGCATGCTAAATGCTTTTTTAGTCTGTAGATCTTGCCACACTAGCTATTTTACATGTTCCCCTTTGTATTgaaaagcataatacatttaatttgccagAACAGATTCCTATGAAAGTACTTTCCCTTCTGCAATCACTTAGGAAGCTTGTGTATGCACAGTTAATGCTGCTAAAATCACTTTAAGAGTTTGAAGCAGCGGAATGCATCAAAGGATTTGTATTTTGGCTGCCCCCGTGCTTTAGCAGTGTCACACTATTTGATGCGTCTCAGATAAGTATGGATACATTTCATATCCAATAGTAGAAACAGTATAGTGTTCTGCCATGCCATGTAACCCCACTGTCACCAAAGCAACTCAAGTCCTCTGTGTCGTATCCCCTGAATGTCAGTTAGAGTATCCTCTCATAGAAGAGGAGGTAGGCTTGCGAGTTCTGCACTTTAGTCTCGGGCACAGCCTGGACACTTGTATCACTTATATGGAACCAGGAGCCTTTGACCAATTCAGCATCATTCACTGCAaACTCAATCCATTCAAATGCTTCGAAAGGTAGTCCTTCGGTTGCACTTTGACATAGGCCGTGTAGTGACCGGACCTCATCGTGCCACTGTGTTCCACTATCCCATAGAGGCTGTACAGCATCCTCGTTTCTCCCTCAGCGATATTCTAGGAGTTAACAGTGCAGAATGGAGCCAAGTCCAGAACCTGTGGAAACTTCAAGTGTAGAGTTTAAATGATGCATAAAACCTTACCTGTTGAAATCTTTTCAGATGAAGAGTGAGCACTGGGGGAGGCCTTGAGATCAGCATCTGCTTCAGGGCATCTGTGTAGACGCTGTTCTTGTCACCTGCCGAGGATGATTTAGCTCCTTTGCCCTTCTGCCGAGTACAAGTGACACACTGcaggctgttgttttttgtgaggTGTTCCACTTCAGTGAACTGAAACAAGCAAGACTGCACCGAGCACTCCTGCTTCCCTGGCGCAGCTCTGACTGCAAGAGTGCTGAAGGCTAAATCTGGGTCCTGGTTCACCACAACGTAAGCTTTAGTGTCTGCCGCTGCCTCACTGACATCGATCTCCAAGTCTATATCGTCGGGAGATATGAAAGCATCGTTCAGCCTCAGGTTGTGTAGATCCTGGACAATTTCTCCCTCCCTGGCGCTCTCATTAGTCAGAGTTCCGCAGCGGTTATCGCCATTCGGAAGCACGTCGGCGTCCCCCTGCCCCGTTTCATCTTCTGTGGGTTTCGGCTCGTTGCCGCCGCTGCCGTTGTGGTTGTCTTGACAGTCTTTTGCGCTGTTCTCTTCGTTGCTCGGCTCCGGGTTATCGGTCTGTGCCTGTTCGCTGCTGTCGGAGCAAGGCTCTCCCTGCGCCGAGTCCCCCGGGTCTGCCTGGCTGACCTCTCCTTGAGATGAAGACTCCACTCCGTTCGGAAGCTCTTCAGACTCCAGCTGGGCCGTGGAGCCAAGTTCCATCTTCCCTCCCTGTTTCTGCTGACGTCTCTGGATCTGCTTGCTTCTTTGCCTGTTTCTTCACCTTCTTTTGTTGATATTTGCTGCCAGCGCCAGAGGGAAGGTCCTCTTTCCCGTTAGCGGACGCAGTAGGCATCTTGTAATCATCGTCCTCATTCTCACTGATCTTcctcacattttttttctggttcTTTTTCCTGAATTACTTCATCTGAAACGGGGAGAGACAAGTCCAGGAACATCTCAGTGACTAAAGATACCTAGAAGACAGCAGAAGAAAAGCACAGTTTAAATTTGAACACAATTTGAATTTAAGTGGTTTGCATCTTGAATTAAACAACAAGGGGCGGCCCGTCATTAGGAGCCAGTGGGGCCGGGCCCTACttagagaataaaaaaaataaaaaaaatcagtgctTGTACATTGCAAACTTTATAAACTCCATATTAGTGTAAGTTCCGTGGATAACAATGCACAGTTCACTATGGCAGATGCTAATAACAGGAAGTAAACAAACCAGAAACGGCATGTCTATGGCAAGTCATCAAGGTCATATGGCAGTGAACGCAGCCGAGCAATTGTGAGTTTAGCTGGTGGGGCCGGCCCCTCGTCCGCACTGAAGCAATAATGTTCGTACTGCACAGAAATACAGCAGATACGGCCGATCATGGATGCGCTTTAAGAGTTTTAATGAG

Function

symbol description
cct8 Predicted to enable unfolded protein binding activity. Acts upstream of or within behavioral response to nicotine. Predicted to be located in cytoplasm. Predicted to be part of chaperonin-containing T-complex. Is expressed in brain. Orthologous to human CCT8 (chaperonin containing TCP1 subunit 8).

NR:

description
T-complex protein 1 subunit theta

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0035095 behavioral response to nicotine biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K09500 CCT8; T-complex protein 1 subunit theta

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016084 True 6048 mRNA 0.44 21 6647307 6669012

Neighbor

gene id symbol gene type direction distance location
AMCG00016081 NA coding downstream 6770 6637332 ~ 6640537 (-)
AMCG00016086 ltn1 coding downstream 10610 6614705 ~ 6636697 (-)
AMCG00016075 NA coding downstream 1377553 4932824 ~ 5269754 (-)
AMCG00016069 LOC103044157,LOC107720662,LOC107556867 coding downstream 1759502 4861485 ~ 4887805 (-)
AMCG00016070 NA coding downstream 1883958 4745269 ~ 4763349 (-)
AMCG00016087 grik1b,grik1,LOC105006673 coding upstream 66934 6735946 ~ 6773094 (-)
AMCG00016083 LOC106581501,LOC107558811,LOC105006673,LOC107670116 coding upstream 114525 6783537 ~ 6787509 (-)
AMCG00016089 NA coding upstream 147714 6816726 ~ 6829522 (-)
AMCG00016090 NA coding upstream 162110 6831122 ~ 6833591 (-)
AMCG00016082 NA coding upstream 178794 6847806 ~ 6861382 (-)
G10956 NA non-coding downstream 424078 6222863 ~ 6223229 (-)
G10952 NA non-coding downstream 757391 5889588 ~ 5889916 (-)
G10940 NA non-coding downstream 805603 5841477 ~ 5841704 (-)
G10935 NA non-coding downstream 895973 5750918 ~ 5751334 (-)
G10934 NA non-coding downstream 900740 5746336 ~ 5746567 (-)
G11215 NA non-coding upstream 950686 7619698 ~ 7619997 (-)
G11216 NA non-coding upstream 951628 7620640 ~ 7620853 (-)
G11243 NA non-coding upstream 1203405 7872417 ~ 7872769 (-)
G11247 NA non-coding upstream 1298059 7967071 ~ 7967305 (-)
G11288 NA non-coding upstream 1424788 8093800 ~ 8095204 (-)
AMCG00016074 NA other downstream 1717407 4903856 ~ 4929900 (-)
AMCG00016049 NA other downstream 2726804 3886298 ~ 3920503 (-)
AMCG00016046 NA other downstream 3104771 3528842 ~ 3542536 (-)
G10478 NA other downstream 3612124 3034422 ~ 3035183 (-)
AMCG00016029 NA other downstream 3800950 2784125 ~ 2846357 (-)
AMCG00016110 ufm1,LOC107701138 other upstream 1011899 7680911 ~ 7753437 (-)
AMCG00016119 NA other upstream 1450209 8119221 ~ 8124033 (-)
G11326 NA other upstream 1522534 8191546 ~ 8194432 (-)
AMCG00016134 NA other upstream 2154533 8823545 ~ 8827760 (-)
AMCG00016176 NA other upstream 4165400 10834412 ~ 10847811 (-)

Expression


Co-expression Network