AMCG00016087 (grik1b,grik1,LOC105006673)


Basic Information

Item Value
gene id AMCG00016087
gene name grik1b,grik1,LOC105006673
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 6735946 ~ 6773094 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016087
GCTTGATACGCATGCAGGAGCTGATCAAAGCACCATCGCGGTACaacatcaaaattaaaatacgaCAGCTTCCAACGGGGAATAAGGACGCTAGACCGCTGCTGAAAGAGATGAAGAAAGGGAAGGAGTTCTATGTGATATTTGACTGCACGTACGAGACCGCGGCAGACATTCTGAAACAGATTCTTTCCATGGGGATGATGACAGAATACTACCACTACTTTTTCACCACTCTGGATCTGTTCGCTTTGGACCTGGAACCATACCGCTACAGTGGAGTGAACATGACAGGCTTTCGGCTTCTCAACATTGACAACTCACAGGTGGCGTCTGTGGTGGAGAAGTGGTCCATGGAGCGCTTGCAGGCCCCACCCAAACCTGAAACTGGTTTACTGGATGGTATGATGACAACTGAGGCTGCCCTGATGTATGACGCAGTGTACATGGTCGCTGTGGCATCCCAGCGCTCCACTCAGATGACTGTCAGCTCCTTGCAGTGTCACCGACACAAACCGTGGCGATTTGGACCGAGATTCATGAACATGTTTAAAGAAGCACAATGGGACGGTTTGACAGGACACATCACCATCAATAAAACAGATGGTCTCCGGAAAGATTTCGACTTGGACATAATCAGTCTCAAGGAGGAAGGGATAGAAAAGCCTGCTGGTGATCCCAATAGCCGTCTAAATAAAGTATGGAAAAAGATTGGAGTTTGGAACTCAAACAGTGGCCTTAACATGACAGACAGCAATAAGGAGAAATCAACTAACGTTACTGACTCCATGGCAAACAGGACGCTAATCGTGACTACAATTCTGGATGATGCAGTGGACGGGAGGAGGTTATCGAGAGAGATGATGTTTGGGCCCGTGACCTTTCTTAGAAGCCTGTGGGGTACTCCCTATCTGAGCAGTGTAAGAGCTGACCTACTTTGCCATGTCTTACAGGAAGACCCCTACGTCATGTATAAGAAGTCCGACAAACCTTTGTACGGGAATGACCGCTTTGAAGGCTACTGTCTGGACTTGCTCAAGGAGCTGTCCAATATTCTGGGCTTCTCATATGAAGTCAAGCTGGTCTCGGATGGTAAATACGGGGCCCAAAACGACAAAggggaatggaatggaatggttCGAGAACTGATAGACCATATAGCGGATTTGGCAGTGGCACCTTTAACCATAACATACGTGAGGGAGAAGGTGATAGATTTCTCGAAGCCGTTCATGACCCTGGGTATCAGTATTCTCTACCGCAAACCTAATGGCACCAACCCGGGTGTGTTCTCCTTCTTGAACCCTCTGTCCCCTGATATCTGGATGTATGTTCTCCTGGCTTGCCTTGGCGTCAGCTGCGTGCTCTTTGTCATTGCAAGGTTTACACCTTATGAGTGGTATAACCCCCACCCGTGCAATCCAGACTCTGATGTGGTGGAAAACAATTTTACTTTACTAAATAGTTTCTGGTTTGGAGTTGGAGCTCTCATGCAGCAAGGATCAGAACTGATGCCCAAAGCACTTTCCACCAGAATAGTTGGAGGAATCTGGTggttttttactttaataataatatcgtCCTACACTGCTAACTTGGCTGCCTTCCTGACTGTTGAAAGAATGGACTCACCAATTGACTCTGCTGACGATTtagcaaaacaaactaaaatcgAGTATGGGGCTGTTAGAGATGGATCAACCATGACCTTTTTTAAGATGTGGGCATTCATGAGCAGCAGGAAGCAGACAGCCTTGATAAAAAACAATGATGAAGGCATTCAGAGAGTCCTAACCACTGACTATGCACTATTGATGGAGTCCACCAGTATAGAGTATGTCACGCAGAGAAACTGCAACCTCACACAGATTGGGGGCTTGATTGACTCCAAGGGCTATGGTGTGGGGACACCGATAGGTTCCCCCTACAGAGATAAGGTCACAATTGCTATCCTTCAGCTACAGGAAGAGGGCAAATTGCACATGATGAAGGAGAAGTGGTGGCGGGGCAATGGCTGCCCAGAGGAAGACAGCAAGGAAGCCAGTGCTTTGGGTGTGGAAAACATCGGGGGCATTTTTATTGTACTTGCCGCAGGACTTGTGCTTTCTGTCTTTGTAGCCATTGGggagtttatatataaatccagGAAAAACACGGATATTGAACAGgccttttgtttcttttatggAATGCAATGCAAGCAAACGCACCCTTCCAATTCCACCTCTGGAACCACCTTATCCACGGATTTAGACTGTGGGAAGCTTCTCCGAGAAGAGCTGGGGATGCGACCTCAGCATTCAATTCACACTTGTATTTCTTTTAGTGCTGTAATGGAGGAGCTTGGCATCTCACTTAAGTGTCacaaaactgtaaagaaaagGTCGAGAACCAAGGGAAGAACAGGATTCTCAAGCATTCTATTGTGCCATCACAAACGCATTCTGAGGAGAGAGACCATGACA

Function

symbol description
grik1b Predicted to enable glutamate receptor activity and transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to be involved in glutamatergic synaptic transmission and modulation of chemical synaptic transmission. Predicted to act upstream of or within ion transport. Predicted to be located in membrane and synapse. Predicted to be integral component of membrane. Predicted to be active in postsynaptic membrane. Human ortholog(s) of this gene implicated in childhood absence epilepsy. Orthologous to human GRIK1 (glutamate ionotropic receptor kainate type subunit 1).
grik1 Enables kainate selective glutamate receptor activity. Predicted to be involved in glutamatergic synaptic transmission and modulation of chemical synaptic transmission. Predicted to act upstream of or within several processes, including chemical synaptic transmission; modulation of chemical synaptic transmission; and positive regulation of gamma-aminobutyric acid secretion. Predicted to be located in dendrite; postsynaptic density; and presynaptic membrane. Predicted to be part of kainate selective glutamate receptor complex. Predicted to be active in glutamatergic synapse and postsynaptic membrane. Predicted to be integral component of presynaptic membrane. Implicated in childhood absence epilepsy.

NR:

description
glutamate receptor ionotropic, kainate 1 isoform X3

GO: NA

KEGG:

id description
K05201 GRIK1; glutamate receptor, ionotropic kainate 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016087 True 2462 mRNA 0.47 15 6735946 6773094

Neighbor

gene id symbol gene type direction distance location
AMCG00016084 cct8,LOC107693911,LOC107701129 coding downstream 66934 6647307 ~ 6669012 (-)
AMCG00016081 NA coding downstream 95409 6637332 ~ 6640537 (-)
AMCG00016086 ltn1 coding downstream 99249 6614705 ~ 6636697 (-)
AMCG00016075 NA coding downstream 1466192 4932824 ~ 5269754 (-)
AMCG00016069 LOC103044157,LOC107720662,LOC107556867 coding downstream 1848141 4861485 ~ 4887805 (-)
AMCG00016083 LOC106581501,LOC107558811,LOC105006673,LOC107670116 coding upstream 10443 6783537 ~ 6787509 (-)
AMCG00016089 NA coding upstream 43632 6816726 ~ 6829522 (-)
AMCG00016090 NA coding upstream 58028 6831122 ~ 6833591 (-)
AMCG00016082 NA coding upstream 74712 6847806 ~ 6861382 (-)
AMCG00016085 NA coding upstream 102352 6875446 ~ 6897876 (-)
G10956 NA non-coding downstream 512717 6222863 ~ 6223229 (-)
G10952 NA non-coding downstream 846030 5889588 ~ 5889916 (-)
G10940 NA non-coding downstream 894242 5841477 ~ 5841704 (-)
G10935 NA non-coding downstream 984612 5750918 ~ 5751334 (-)
G10934 NA non-coding downstream 989379 5746336 ~ 5746567 (-)
G11215 NA non-coding upstream 846604 7619698 ~ 7619997 (-)
G11216 NA non-coding upstream 847546 7620640 ~ 7620853 (-)
G11243 NA non-coding upstream 1099323 7872417 ~ 7872769 (-)
G11247 NA non-coding upstream 1193977 7967071 ~ 7967305 (-)
G11288 NA non-coding upstream 1320706 8093800 ~ 8095204 (-)
AMCG00016074 NA other downstream 1806046 4903856 ~ 4929900 (-)
AMCG00016049 NA other downstream 2815443 3886298 ~ 3920503 (-)
AMCG00016046 NA other downstream 3193410 3528842 ~ 3542536 (-)
G10478 NA other downstream 3700763 3034422 ~ 3035183 (-)
AMCG00016029 NA other downstream 3889589 2784125 ~ 2846357 (-)
AMCG00016110 ufm1,LOC107701138 other upstream 907817 7680911 ~ 7753437 (-)
AMCG00016119 NA other upstream 1346127 8119221 ~ 8124033 (-)
G11326 NA other upstream 1418452 8191546 ~ 8194432 (-)
AMCG00016134 NA other upstream 2050451 8823545 ~ 8827760 (-)
AMCG00016176 NA other upstream 4061318 10834412 ~ 10847811 (-)

Expression


Co-expression Network