AMCG00016088 (sod1)


Basic Information

Item Value
gene id AMCG00016088
gene name sod1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 6952612 ~ 6958966 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016088
AACACGACCTTTGTCTCGATTGCGCTTGCGTGAGGGCGGGCGGAGTGAGTGCGCAGATTGAGCTCTGATTGGCGGCGCTGCGGACGGGACTCTGTTTGGGTTATTTCAACACAGAGGCAGGAGCGAGTGTTGCAGGCTCTTCGTTTCGTAAATCAAGTTCAAGCAACATGGCGTTGAAGGCGGTGTGTGTACTGAAGGGTGCCGGCGAAGTCTTCGGAACTGTCCACTTTGAGCAGAAGGATGGAGGGGCACCTGTTAAACTGACAGGCCAGATTGTTGGATTAACTCCAGGGAATCATGGCTTTCATGTTCATGCATTTGGAGACAACACCAATGGCTGTATAAGTGCTGGCCCTCACTTCAACCCACACAATAAAAATCACGGCGGTCCTAAAAGTGAAGAGAGGCATGTAGGTGATCTTGGCAATGTTGTGGCTGGAGATGATAAAGTCGCAATCATTGACATTGAGGACAAACACCTAACCTTGACTGGACCATATTCCATCATTGGACGAACAATGGTGATCCACGAGAAGGCCGATGACCTTGGCCAAGGGGGAGATGATGAGAGCCTCAAGACTGGCAATGCTGGTGGGCGGCTGGCCTGTGGGGTCATTGGCATCGCCCAGTGAGGAGAGCTGCAGTCCCAAAGCACTGGAGCTACAATGTAGGCGACCAATNNccccccccccccccaaaaaaaaatgtaaaacccttgaagGTAGTTCACCTTTTCATAAATCGctaatgttaattaaaaccatAGTTGTAATTTTTGTCCCagtgtttaacatttttttgttgtgaaGTCTATGTAAAAGTCATTGTCTGAAACAACAAACACCTGCAGCATTAAGGGATGTTTTTTCCACTCTTTGCTGTACACCAAATAAATATTGACCACTgcaacagtgtttttttctttgtatccaTCTAAtgtagtttctgttttttcaccttttgtatAGGAGTTAAACTTGTAGTggctttttaaagaaattctACACTTCGAAATGTCTTTAAATTGATGTTTCTAACTTGGTAGGATCGATCTTGCGTAAAGAACAATTCAATCTTCTAatgcccatttttttttttttgcctgtagAATTCAACCTTTTGAAGTAATGTAGCTGTATTTTGACAGCAGTGACCTGCTGTAATTCCCTTCAGGTTCTGCATGTCAGGGGAATGCCTCATGCAAACGTCATATTTCAACATGGCTGGTTTGGATAAAGTTAGAAAGTACTGGACATGTGTCCAGAAGACTGAATTTGTTAACAAATCTGGAAACTTGATATCCATGCAATGTCTTATGTAAACTCTTGGTGGCGCAATTCAGACAATCTTAAATTAACCAGTTGATGGCAGTGGATCTTGGTAGTTGCCTCCTTCAATAATAAGTGTGAATTAACTAATTGTAGCAATTGGTTTTTAAAGGTATATGAACTAAGTTGTAAGAGGGATTGCATTTTATACACCCTTTTGGAATTTTCTCTAATTAGCCTTTTTGGCTTGTATTTTAAAGGGCAACCTGAAAATCTCAAATGTCCCACTATGAAACCCTTCCTGGTAGTGCCTTTTAAATGGGCaagaaacttttaaaatctgcattaCAGTATATGTCAAATGCCAAAAAAAGTGCCTGCTGAAGCAATAACATTTGGTCTCTTTAAAGCTCTTTCTGGCTGGTTTCAGTTTAGGGgcactctacctaaaataacagtGAGGAGTCCATTTCTTGGTTTGTACGAAGATGATGCTTGTTGGTGTTCAGATGGCAAACCACTACTGAAAATACTTGTTGGGTAGGGACCAGGGAGGTTGGGTACCTCTGGACCAGGGAATCCATAAGAATTCCCTTTTACCAAGAGAGGGGGGCACTGTGCTGTGGGATGTGTTTTCCTGTCATAGTGTTGTAAGGTACTTCCTACTATGGATCGTAAAGATGATATTGGGTTTGTTTAAAGCGTCCAATTACTATATGAACCATTGGAGAGGGTACTGTATGATGGATACGTTTGCCATTCAATTGAACATTTGAGGTGCCATGGAAGTCTCCAAAAAGGTTGCAAGTAAGATAAAACATTTATCAAGGATCAGTTTCTACCAGAATCAAACAAGTCTGTGCATCCAGATAAGCTGGGTTTTTCCCTgaaaattcagttttattttcaaatttataAAAGGGGTAAGTGCGCTAGTTGGTGTGCTACACTAAATGGTATAGTTGAGTGTACATTGACCTTTGTATGTCCAGtgtttgtattcagttttgtgtttataaCTACATAGTTGTAGTTGTAGAGGTGGCTAGGACCTTCAATCTATACATATCTGGCAAAGGAACAAGGTGTTTGAGTGGCTTCCACTTGTATCTTACCATTCTTAAATTATGTTGTGTGGATTTTAGGGTTGGTTAATATAATTAAGATATCATATGCATGGtttgtttcaataaaaaaaaaagtgca

Function

symbol description
sod1 Enables superoxide dismutase activity. Acts upstream of or within several processes, including neuron cellular homeostasis; response to metal ion; and response to methylmercury. Predicted to be located in cytoplasm. Predicted to be active in several cellular components, including cytosol; mitochondrion; and peroxisome. Is expressed in several structures, including atrium; blastoderm; blastodisc; musculature system; and nervous system. Used to study amyotrophic lateral sclerosis. Human ortholog(s) of this gene implicated in several diseases, including Down syndrome; artery disease (multiple); eye disease (multiple); glucose metabolism disease (multiple); and neurodegenerative disease (multiple). Orthologous to human SOD1 (superoxide dismutase 1).

NR:

description
PREDICTED: superoxide dismutase [Cu-Zn]

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0006801 superoxide metabolic process biological_process
GO:0004784 superoxide dismutase activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K04565 SOD1; superoxide dismutase, Cu-Zn family

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016088 True 2474 mRNA 0.41 6 6952612 6958966

Neighbor

gene id symbol gene type direction distance location
AMCG00016085 NA coding downstream 54736 6875446 ~ 6897876 (-)
AMCG00016082 NA coding downstream 91230 6847806 ~ 6861382 (-)
AMCG00016090 NA coding downstream 119021 6831122 ~ 6833591 (-)
AMCG00016089 NA coding downstream 123090 6816726 ~ 6829522 (-)
AMCG00016083 LOC106581501,LOC107558811,LOC105006673,LOC107670116 coding downstream 165103 6783537 ~ 6787509 (-)
AMCG00016094 scaf4 coding upstream 1081 6960047 ~ 6989921 (-)
AMCG00016093 NA coding upstream 56996 7015962 ~ 7020428 (-)
AMCG00016095 NA coding upstream 66136 7025102 ~ 7045994 (-)
AMCG00016096 NA coding upstream 94740 7053706 ~ 7056775 (-)
AMCG00016097 synj1 coding upstream 102851 7061817 ~ 7097527 (-)
G10956 NA non-coding downstream 729383 6222863 ~ 6223229 (-)
G10952 NA non-coding downstream 1062696 5889588 ~ 5889916 (-)
G10940 NA non-coding downstream 1110908 5841477 ~ 5841704 (-)
G10935 NA non-coding downstream 1201278 5750918 ~ 5751334 (-)
G10934 NA non-coding downstream 1206045 5746336 ~ 5746567 (-)
G11215 NA non-coding upstream 660732 7619698 ~ 7619997 (-)
G11216 NA non-coding upstream 661674 7620640 ~ 7620853 (-)
G11243 NA non-coding upstream 913451 7872417 ~ 7872769 (-)
G11247 NA non-coding upstream 1008105 7967071 ~ 7967305 (-)
G11288 NA non-coding upstream 1134834 8093800 ~ 8095204 (-)
AMCG00016074 NA other downstream 2022712 4903856 ~ 4929900 (-)
AMCG00016049 NA other downstream 3032109 3886298 ~ 3920503 (-)
AMCG00016046 NA other downstream 3410076 3528842 ~ 3542536 (-)
G10478 NA other downstream 3917429 3034422 ~ 3035183 (-)
AMCG00016029 NA other downstream 4106255 2784125 ~ 2846357 (-)
AMCG00016110 ufm1,LOC107701138 other upstream 721945 7680911 ~ 7753437 (-)
AMCG00016119 NA other upstream 1160255 8119221 ~ 8124033 (-)
G11326 NA other upstream 1232580 8191546 ~ 8194432 (-)
AMCG00016134 NA other upstream 1864579 8823545 ~ 8827760 (-)
AMCG00016176 NA other upstream 3875446 10834412 ~ 10847811 (-)

Expression


Co-expression Network