AMCG00016089


Basic Information

Item Value
gene id AMCG00016089
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 6816726 ~ 6829522 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016089
ATGTGCTGCTCTGTTGCACTGAGCTGCTTGGGACTGCTGATAGCCATAATGGGCATGCGTTGCACATCCTGTATCCAGAACAATGAGCGTGGCAAGAGTATAGTGCTGATAATTGCTGGCTGGATGATCATTCTCGCTTGTATATGCGTCATTATACCCGTGTCCTGGACTGGCCACACAATCATCACAGACTTCTACAATCCGCTGCTGCTGGACGCTCAGAGACGGGAGCTGGGCGAGGCGCTGTACATTGGGTGGGTGACTTCTGCTTTTCTGTTCGCGGGAGGACTTATATTTGCGTGCCGCCATGTGCCTAGTGATAAATATTTGGATAAGAGGCTGATGTATCCCAGAAACACACCGTTAGTTGAGTACCAGCCTCCCATGTTACAACGCTATCCCTCAAGCATACGCAGCAGAACCGACTATCATCGCACACCTCCCAGTGCCCCCGTGGTCGAGTCCACTCCGCCTCCGGTTCCCCCAGTATCTCTGATTGTCCCTAAACCGCAAGAGCAAAGCGCGGCACTGCAGCACGACCACGGAGAGTCGACTCTTGCTGCGATTAAGGACATGCGCACAACCATAATCGGTTTCGACTACAGGGTTCGGAATCTGGAATCTGTGAAAACGCATACAGCCCCCTGGGCGCCGCTCCGCTCTGCACCCGTCCTCACGTCATACACACTTTCATCTCCGGTTCCTGCTCCCTCTACTGGATCTCCCTTCACCCCACCTGCTGCCGCTGTGCCCGATGGGCTGCGCAGACAGATCGTCATACTTTTGGTTACTGGCTTCGATGTGAAGGACTCTGTGGTCAGCGGCTACGTGCCGGGAGAGATCGCCTGCTGTGCCGACGAAGCCACACAGACGGAGACCCTGAATGAGGTTCCCGAGGCCGAGGGCTCTGCAAGGCACCTCAGCTGGAGACAGAAGGAGGAAAGGAGACGCCAGGAGGCTCAAGTCTCTGATCTGCAGAGCCAGCTGGAGAAGCAGATCAATTCAGAGGTGGCCGAACTGCAGAAGAGGTGCGATACATCCCAGCAGCCCTGCGCGCCCTTGAGCATCAGCGGGACACTGCAGTATGAAGCGGATCCTCTGAGGGACGCCCTGATGGAGGCGGAAGAGATGCAGGCCGAGGCACACTGA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016089 True 1149 mRNA 0.56 4 6816726 6829522

Neighbor

gene id symbol gene type direction distance location
AMCG00016083 LOC106581501,LOC107558811,LOC105006673,LOC107670116 coding downstream 29217 6783537 ~ 6787509 (-)
AMCG00016087 grik1b,grik1,LOC105006673 coding downstream 43632 6735946 ~ 6773094 (-)
AMCG00016084 cct8,LOC107693911,LOC107701129 coding downstream 147714 6647307 ~ 6669012 (-)
AMCG00016081 NA coding downstream 176189 6637332 ~ 6640537 (-)
AMCG00016086 ltn1 coding downstream 180029 6614705 ~ 6636697 (-)
AMCG00016090 NA coding upstream 1600 6831122 ~ 6833591 (-)
AMCG00016082 NA coding upstream 18284 6847806 ~ 6861382 (-)
AMCG00016085 NA coding upstream 45924 6875446 ~ 6897876 (-)
AMCG00016088 sod1 coding upstream 123090 6952612 ~ 6958966 (-)
AMCG00016094 scaf4 coding upstream 130525 6960047 ~ 6989921 (-)
G10956 NA non-coding downstream 593497 6222863 ~ 6223229 (-)
G10952 NA non-coding downstream 926810 5889588 ~ 5889916 (-)
G10940 NA non-coding downstream 975022 5841477 ~ 5841704 (-)
G10935 NA non-coding downstream 1065392 5750918 ~ 5751334 (-)
G10934 NA non-coding downstream 1070159 5746336 ~ 5746567 (-)
G11215 NA non-coding upstream 790176 7619698 ~ 7619997 (-)
G11216 NA non-coding upstream 791118 7620640 ~ 7620853 (-)
G11243 NA non-coding upstream 1042895 7872417 ~ 7872769 (-)
G11247 NA non-coding upstream 1137549 7967071 ~ 7967305 (-)
G11288 NA non-coding upstream 1264278 8093800 ~ 8095204 (-)
AMCG00016074 NA other downstream 1886826 4903856 ~ 4929900 (-)
AMCG00016049 NA other downstream 2896223 3886298 ~ 3920503 (-)
AMCG00016046 NA other downstream 3274190 3528842 ~ 3542536 (-)
G10478 NA other downstream 3781543 3034422 ~ 3035183 (-)
AMCG00016029 NA other downstream 3970369 2784125 ~ 2846357 (-)
AMCG00016110 ufm1,LOC107701138 other upstream 851389 7680911 ~ 7753437 (-)
AMCG00016119 NA other upstream 1289699 8119221 ~ 8124033 (-)
G11326 NA other upstream 1362024 8191546 ~ 8194432 (-)
AMCG00016134 NA other upstream 1994023 8823545 ~ 8827760 (-)
AMCG00016176 NA other upstream 4004890 10834412 ~ 10847811 (-)

Expression


Co-expression Network