AMCG00016091


Basic Information

Item Value
gene id AMCG00016091
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 7022147 ~ 7024851 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016091
CAGCCTTCAGACATGCCACGGCCCTGCCCCTGTCCCTGCTTCTTGTTTGCTCAGTTGGCCATTTTCCTTCACAATCTTTTAAAGCGCAAACAGAGCCGAGCTTCTGTGGCAGGTTTTTACACAGTCCTACTGGAGGTGTAGTAAGGCATTCTCACTTCCAGATTACTTTCTAGAGAGcttaacaatgaaaaataacaccAACACCTCCGAATATGTTTGGACATACGAATACTTCTATGACTACATTGACCCAGTTGTTGTGGATGAAAAGCAACTGAGATTCAACAAGTATACCATTGTTATATTGTTCTGGGTTGGATTAGCAGGATttgtggcttttctttttttaattctactgCAAATGTCACGCTCTGGCAATGTACAACCACGGCATCGCAATTCAAGGAGGTTCTGCTTACTGTGAAACCAGGGGGATCATCACTAGCCTCTGAAGCATATTTCAGCACTAGAAGACAACCAAGGTCATGAATTGGATGAAAGAAAACCTAGTTCAAAATACAATGCAGACAGAATTTTACTAACACTCccaaaataaaagcagactGCTTTACTCATTTGCTCCAATGCAAGATACATGCAGCTTTTATTTGGTTCTTAAATAACATGACCCCCAATAGTATCTTAAAGATATGAGATCAGCTTTGACTTTTGTCACAATAACAAATTCAGGGTGATCAAAAGCAGAAGTCgtttatctttttttccccccgttAAAATCTGATGTGCCAACGTTCTTTATATGGAGTTGTTTGACTAAACTGTGTATAAGTGTCTGTTAAATGATGGTCTAAAGTCAGAGTTAGGGAGACATACTAAAGAACTGCCCTGTTCTTGTCTACTCCACATGGACTccatttgtgaaagaaaataattctaCATGAACCAACGTAGGAACACTATTTCAGACATAGATTGCATagttgccattttattttttgaaaccACTAGAACAAGCCTGACTGCTTGGGACacagttgaaaaggaaaggtCTCAAGCAGGTTTGCCAGTCCATGTAATAACAAATGCTGGTTGGAAAACCTGCCAATTACCAGGAAGTTCATTCGTTGAAATGACGCATGGGCAcgtttacagctctggaaaaaattaagagaccactaaaaaatgatcagtttttctggttttactattcataggtatgcgtttgggtaaaattaacattgttgttttcttctataaactactgacaacatttctaccaaattccaaatacaaatatgaatggaatggaatggctgctgATAGAGTAGAATAGAATAGAGATGCTGATTGAAGAAAactttgcagtggtctcaattttttccagagctgtatgcaTTTAGACGGCgaatattaaaacatgaaaaccaaACTCAtatcagttttcattttcattatgctggtttgtattaatatacagaCTAATAGCTATTGAGCATTACAGCATACAGTTGCTTCTATGTGGGCTTCCACTGCAATGTTTGTTCATTCCAGTTGGGAAATTGGTTTGtgaaactaaaatggaaaacacaaaacaaaaacatgactaTTTCAGGAAACACAATAGAGACAAAAAGTTGCCATAGGAAAATATTTGCACAGTTGTCCTGCCCCGTAATTGGTCAATACATTTAATGCCTTCGGATGCTTGTTATAAATTTGTAGTACATGCctgcaaatcaaataaaaatgtagactGAAATGGATTCtgtcatatttttttgtttcaggcCACAATGAGCCTCCCTTCGCTTTAACTGTCCAACCACCATGGGGCCTAATCCTGACAGATCTCAGACACCAATTGGGGCTGGGCTTGG
>TU13726
GTACATCCTGTAATTGCATGGAGATGGCATCAGCCTTCAGACATGCCACGGCCCTGCCCCTGTCCCTGCTTCTTGTTTGCTCAGTTGGCCATTTTCCTTCACAATCTTTTAAAGCGCAAACAGAGCCGAGCTTCTGTGGCAGGTTTTTACACAGTCCTACTGGAGGTGTAGTAAGGCATTCTCACTTCCAGATTACTTTCTAGAGAGcttaacaatgaaaaataacaccAACACCTCCGAATATGTTTGGACATACGAATACTTCTATGACTACATTGACCCAGTTGTTGTGGATGAAAAGCAACTGAGATTCAACAAGTATACCATTGTTATATTGTTCTGGGTTGGATTAGCAGGATttgtggcttttctttttttaattctactgCAAATGTCACGCTCTGGCAATGTACAACCACGGCATCGCAATTCAAGGAGGTTCTGCTTACTGTGAAACCAGGGGGATCATCACTAGCCTCTGAAGCATATTTCAGCACTAGAAGACAACCAAGGTCATGAATTGGATGAAAGAAAACCTAGTTCAAAATACAATGCAGACAGAATTTTACTAACACTCccaaaataaaagcagactGCTTTACTCATTTGCTCCAATGCAAGATACATGCAGCTTTTATTTGGTTCTTAAATAACATGACCCCCAATAGTATCTTAAAGATATGAGATCAGCTTTGACTTTTGTCACAATAACAAATTCAGGGTGATCAAAAGCAGAAGTCgtttatctttttttccccccgttAAAATCTGATGTGCCAACGTTCTTTATATGGAGTTGTTTGACTAAACTGTGTATAAGTGTCTGTTAAATGATGGTCTAAAGTCAGAGTTAGGGAGACATACTAAAGAACTGCCCTGTTCTTGTCTACTCCACATGGACTccatttgtgaaagaaaataattctaCATGAACCAACGTAGGAACACTATTTCAGACATAGATTGCATagttgccattttattttttgaaaccACTAGAACAAGCCTGACTGCTTGGGACacagttgaaaaggaaaggtCTCAAGCAGGTTTGCCAGTCCATGTAATAACAAATGCTGGTTGGAAAACCTGCCAATTACCAGGAAGTTCATTCGTTGAAATGACGCATGGGCAcgtttacagctctggaaaaaattaagagaccactaaaaaatgatcagtttttctggttttactattcataggtatgcgtttgggtaaaattaacattgttgttttcttctataaactactgacaacatttctaccaaattccaaatacaaatatgaatggaatggaatggctgctgATAGAGTAGAATAGAATAGAGATGCTGATTGAAGAAAactttgcagtggtctcaattttttccagagctgtatgcaTTTAGACGGCgaatattaaaacatgaaaaccaaACTCAtatcagttttcattttcattatgctggtttgtattaatatacagaCTAATAGCTATTGAGCATTACAGCATACAGTTGCTTCTATGTGGGCTTCCACTGCAATGTTTGTTCATTCCAGTTGGGAAATTGGTTTGtgaaactaaaatggaaaacacaaaacaaaaacatgactaTTTCAGGAAACACAATAGAGACAAAAAGTTGCCATAGGAAAATATTTGCACAGTTGTCCTGCCCCGTAATTGGTCAATACATTTAATGCCTTCGGATGCTTGTTATAAATTTGTAGTACATGCctg

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016091 True 1838 mRNA 0.38 3 7022177 7024851
TU13726 False 1723 lncRNA 0.40 3 7022147 7024706

Neighbor

gene id symbol gene type direction distance location
AMCG00016092 hunk,LOC106595522 coding upstream 13375 6993996 ~ 7008772 (+)
AMCG00016078 NA coding upstream 321261 6690753 ~ 6700886 (+)
AMCG00016080 NA coding upstream 343110 6670306 ~ 6679037 (+)
AMCG00016077 NA coding upstream 534630 6372399 ~ 6487517 (+)
AMCG00016076 NA coding upstream 1913155 5048208 ~ 5108992 (+)
AMCG00016104 NA coding downstream 22269 7047120 ~ 7053548 (+)
AMCG00016098 NA coding downstream 77350 7102201 ~ 7110849 (+)
AMCG00016102 dchs1,LOC103363423,LOC105909256 coding downstream 162334 7187185 ~ 7190116 (+)
AMCG00016099 arfip2b,LOC103365243,LOC108276920,LOC107718740,LOC107555180 coding downstream 341445 7366296 ~ 7396259 (+)
AMCG00016100 NA coding downstream 378873 7403724 ~ 7418478 (+)
G11069 NA non-coding upstream 31247 6990649 ~ 6990900 (+)
G11067 NA non-coding upstream 31578 6990127 ~ 6990569 (+)
G11052 NA non-coding upstream 65542 6952613 ~ 6956605 (+)
G11021 LOC107718733,LOC107555187 non-coding upstream 277789 6735610 ~ 6744358 (+)
G10939 NA non-coding upstream 1180326 5841228 ~ 5841821 (+)
G11098 cunh21orf59,c10h21orf59,LOC107577665,LOC107691672 non-coding downstream 29109 7053960 ~ 7055721 (+)
G11168 NA non-coding downstream 454755 7479606 ~ 7481030 (+)
G11195 NA non-coding downstream 485984 7510835 ~ 7511206 (+)
G11197 NA non-coding downstream 495347 7520198 ~ 7521580 (+)
G11202 NA non-coding downstream 502196 7527047 ~ 7597325 (+)
G10981 cct8,LOC107693911 other upstream 356599 6664086 ~ 6665548 (+)
AMCG00016079 NA other upstream 360479 6641658 ~ 6661668 (+)
G10739 foxo1 other upstream 2594088 4427146 ~ 4428059 (+)
AMCG00016030 NA other upstream 4209916 2759347 ~ 2812231 (+)
G10371 LOC105010782,LOC106603266 other upstream 4534396 2485542 ~ 2487751 (+)
AMCG00016103 NA other downstream 245004 7269855 ~ 7302042 (+)
AMCG00016101 trim3b,LOC108423836,LOC103363426,LOC107701140,LOC107720632 other downstream 421599 7446450 ~ 7478586 (+)
AMCG00016136 NA other downstream 2043430 9068281 ~ 9089033 (+)
G11509 NA other downstream 2074569 9099420 ~ 9100036 (+)
G11545 NA other downstream 2198561 9223412 ~ 9226245 (+)

Expression


Co-expression Network