AMCG00016108 (LOC107730863,LOC107704782,LOC103363427,LOC101479746,LOC102203644)


Basic Information

Item Value
gene id AMCG00016108
gene name LOC107730863,LOC107704782,LOC103363427,LOC101479746,LOC102203644
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 7529911 ~ 7574480 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016108
ATGGAGGCTAGAGGGGGAAACAAGCTGAAGAACCAGCTGTTCCGTCTGAACTGGGCCTGGATCTCTCTGGAGAAGGAGTATTATGTGGTGGACGAAGAGACCAAGTATCTGGAGGTTGTGCTGAAGCGCAGGGGGTACCTAGGGGAGACTTCGTTTGTCAGCATTGGCACCAAAGATGGCACAGCCGAGAAAGACAAAGACTTCAGGGGGAAGTCGCAGAAGCAAGTGCAGTTCAACCCTGGCCAAACCACAGCCACCTGGAAAGTGCGCATCCTCACCGACCAGGAGTTTGAGCAGTCGGAGACCTTTCAGATCGTCCTGTCCGAGCCAGTGATGGGCGCTCTGGAGTTCCCCGAAGTTGCCACAGTTGAGATCCTGGATCCAGGCGATGAGTCGACAGTCTATATCCCGCAGTCCAGTTACACCATTGAGGAGGATATCGGAGAGCTACTGATCCCAGTGAAGAGAAGTGGAGATGCCAGTCAAGAGCTCATGGTTATCTGTTACACTCAGCAAGGCACGGCGACAGGCACCATTCCCTCCACAGTCCTGTCGTACTCTGACTACATCTCCCGGCCCGAGGACCACACCAGCGTGCTGCGCTTCGACAAGGACGAGACGGAGAAGTTCTGCCGCTTGGTCATCATCGACGACTCACTGTATGAAGAGGAGGAGTCCTTCAACGTAACCCTGAGCATGCCCATGGGGGGCCGCGTGGGCCAGGAGTACCCTTCCACCAAAGTCACCATCCTGGCAGACCTGGATGACGCACCTGTCTTTTACTTTGGAGACACCGAGTACCATGTCGATGAGAGCGACGGCTACGTGGAGGTGCGGGTGTGGAGGACTGGAACAGACCTCTCGAGGACCGCCACCGTCACCGTGCGCTCCCGAAAAACTGACCCAGTGTCTGCTGAAGctGGTATAGACTATGTGGGGATTAGCCGTAACCTGGACTTCGCCCCCGGAGTGAACATGCAGACCTTCCGCGTCACCATCCTGGACGACCTTGGGCAACCGGTCCTGGAAGGCACCGAGAGGTTCGAGCTGGTGCTGCGGATGCCCATGAATGCTATCCTTGGCGAACCGGGCAAAGCCACCATCTTCATCAACGACTCTGTCTCTGACTTGCCCAAAGTCCAGTTCAGAGAGCCGATGTTCATGGGGAATGAGGCGGATGGCCAGATATTGGCGATAGTGTACCGCAGCGGAGACATCAGCTACAAATCCACCGTGCGCTGCTACAGCAGACAAGGATCCGCACAGGTCATGATGGATTTTGATGAACGGCCCAACACTGATGCTTCTATTATTACCTTCTTACCCGGAGAGATTGAGAAACCATGCGTCCTGAGCCTGGTGGATGACACAGTCCATGAGGAAGATGAAGAGCTGAGGCTGGTCCTGGGAAACCCCAAGAGCGAGTCCCCCTTTGGTGCCTCCATTGGGGAGCAGAATGAGACCCTCATCAAGATCAAAGACAACGGAGACAAGGCCATCATCAAGTTCGGAGAGACAAAGTTCAGCGTCAGCGAGCCAAAGGAAATTGGCCAGATCACAGTGGTGAAAATCCCAGTCCTGCGTGTTGGAGACACTTCCAAAGTGTCAGTAGTGAGGGTTCACACCAAGGACGGCTCCGCAACTTCTGGGGAGGACTACCACCCAGTATCTGAAGATATTGAATTCAAGGAAGGGGAAACACAGCACTTTGTAGAGGTAGAGATTCTGTTTGACGGCATCCGAGAGATGAGGGAGGCCTTTACCGTCCATCTGAAGCCTGATGAGAACATGGTAGCTGAGACTCAGATAAACAAAGCTATCATCTACATTGAAGAGACCAACAGCATGGCTGACGTGACTTTCCCATCTATACCACAAGTGGTGTCCTTGCTGCTGTATGATGACACAGCCCGGACCAAGGACAGCCAGCTCCCAACTGCTGGATATCCTGTCGTCTGCGTAACAGCCTGCAACCCAAAGTACTCCGACTACGATAAGACGGGCTCCATCTGCTCCAGCGAACACATCAACGACACCCTGACGCGCTACCGCTGGATGGTGAGCGCCCCCACAGGCCCTGATGGCGTCACCAGCCCCATGAGGGAGGTGGACTTCAACACCTTCTTCACCTCCTCCAAGCTCATCACGCTGGACTCCATCTACTTCCAGGCGGGCTCTCGGGTGCAGTGCTCCGCCCGGGCCCCCCGTGTGGTGGGAACGGTCGGGGCCGAGCCTTTTTCAGCCAAGTTGCGCTACACGGGGGCTGAAGACCCGGACCACCCCAACCTCATCAAGCTCACGGTCACCATGCCTCACATTGATgGCATGCTGCCAGTGGTGTCCACCCGACCTCTGTCCAACTTCGAGCTGACACTGAGCCCAGACGGCACCCGGGTGGGGAACCACAGGTGCTCCAACTTGCTGGACTTCAACGAGGTGAAGACCCGCTACGGCTTCCTGACGGACGCCACCAAGAACCCGGAAGTGATCGGAGAGACCTCGCCGTACCAGTACAGCCCAGGGCTCAGGGGTTCCAGCACGCTCCGCTTCTACAGAAACCTCAACCTAGAGGCTTGCCTGTGGGAGTTCGTCAGCTACTACGACATGTCCGAACTCCTCACTGACTGCGGGGGCACCATCGGCACGGATGGACAGGTGCTCAACCTGGTCCAGTCATACGTGACTCTGCGGGTGCCCCTCCACGTGTCCTACGTGTTCCATTCCCCCGTGGGCGCGGGCGGCTGGCAGCACTTTGACCTGCAGTCAGAGCTCCGTCTCACATTCGTGTACGACACCGCCATCTTGTGGAAAGACGGCATCGGGAGCCCTCCTGAAGCTGAACTGCAAGGCAATATGCGCATCAACGAGCAGGGACGCCTCGTAGTCAACTTCAAAACAGAAGCTCGGTTCCGGGGTCTGTTTGTCACGACACACTCTGCCTCGTCTCTGTCCTCAATGGTCATGTGTGCCGACCACCCGGGACTCACCTTCACCTTGAGTTTGGTCCGCAGCGAGCCCACCTACAACCAGCCCACGCAGCAGTGGACCTTTGTCTCCGATTTTGCTGTGCGAGATTACTCTGGCACGTACACCGTGAAGCTCATTCCTTGcacttcctctccctctttgGAGTACAGCATCCCTCCAGTCTGCAACCCCAGAGAGCCCATCACCTTCGATATTGACATCCGATTCCAACAGGTCAGTGACCCAGTGGCCGCTGAATTCAGCTTGAACACACAGATGTTCCTGCTGTCCAAGAAAGCCCTCTGGCTATCTGATGGTTCCATGGGCTTTGGACAAGAGAGTGACACAGCTTTCACAGAAGGAGATATCATCTATGGCCGTGTGATGGTTGACCCTGTGCAGAACCTAGGAGATTCCTTCATCTGTAACATTGAGAAAGTCTTCCTGTGTACCGGAGCCGATGGATACGTCCCCAAGTACAACCCCACCAACTTTGAATTTGGCTGTCTGGCAGATTCCCCTTCTCTGCTGTACAGATTTAAGATCATTGACAAAGCTCAGCCGGAGACACAAGCCAGACATTTCGGCAATGTGGAATTCAATGCACGCCTGGCTGTGGATGACCCAGAAGCACTGCCTCTGGTCAGACAACCTGGCTCAGATGGCTTCAGGATTGACTCCACAGCCATGTTCCAGGTGTCAACTGGCAGGGAGTGGTATATCCACACCATCTACACAGTGCGCTCAAGAGAAAATGCCAACAGGGGCATTGGCAAGAGAAGTCTTGAGTACCAGTATAGCTCACTGGTGCACAGCAGTGAGCTCAGTTCAGTGGCCAGGTCTCGCTCTAAGAGGGCAGCCAGGGGCGTCCAAGAGGTGGCGGAGGAGATTGGACTGGAGAACAGCAGGGGAACCAACATCCTACACATTGCGCTCGATCACAGCAGCAAGAAGCAAAACCCTGACAGGGAGGTATTCGCCAATGGCATAATCCCCCGAGAGCTGAATAGCAAAGACGACGAGGATAACCTGGTGACCATCGTGGGGGGGCTGGCAGGCTTGGTGCTCACCATCTGCCTTATCGTCATCATCGTTCTGCTGGTCAGATCCAAGCAGAAGTCCAAGAAGGAAGCCCCCCAGGGGTCCTCCAGCACAGAACCAATGATGTCTCACGGTTATCATAGTCAAGACAACTCAGAG

Function

NR:

description
PREDICTED: FRAS1-related extracellular matrix protein 2-like

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K23380 FREM1_2; FRAS1-related extracelluar matrix protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016108 True 4167 mRNA 0.55 23 7529911 7574480

Neighbor

gene id symbol gene type direction distance location
AMCG00016105 NA coding downstream 3657 7520166 ~ 7526254 (-)
AMCG00016106 NA coding downstream 21816 7473851 ~ 7508095 (-)
AMCG00016097 synj1 coding downstream 432384 7061817 ~ 7097527 (-)
AMCG00016096 NA coding downstream 473136 7053706 ~ 7056775 (-)
AMCG00016095 NA coding downstream 483917 7025102 ~ 7045994 (-)
AMCG00016107 frem2b,LOC106581006,LOC106612873,LOC108433801 coding upstream 34027 7608507 ~ 7616298 (-)
AMCG00016111 NA coding upstream 456445 8030925 ~ 8034752 (-)
AMCG00016118 NA coding upstream 564254 8138734 ~ 8139063 (-)
AMCG00016125 NA coding upstream 781199 8355679 ~ 8357486 (-)
AMCG00016127 NA coding upstream 841770 8416250 ~ 8433185 (-)
G10956 NA non-coding downstream 1306682 6222863 ~ 6223229 (-)
G10952 NA non-coding downstream 1639995 5889588 ~ 5889916 (-)
G10940 NA non-coding downstream 1688207 5841477 ~ 5841704 (-)
G10935 NA non-coding downstream 1778577 5750918 ~ 5751334 (-)
G10934 NA non-coding downstream 1783344 5746336 ~ 5746567 (-)
G11215 NA non-coding upstream 45218 7619698 ~ 7619997 (-)
G11216 NA non-coding upstream 46160 7620640 ~ 7620853 (-)
G11243 NA non-coding upstream 297937 7872417 ~ 7872769 (-)
G11247 NA non-coding upstream 392591 7967071 ~ 7967305 (-)
G11288 NA non-coding upstream 519320 8093800 ~ 8095204 (-)
AMCG00016074 NA other downstream 2600011 4903856 ~ 4929900 (-)
AMCG00016049 NA other downstream 3609408 3886298 ~ 3920503 (-)
AMCG00016046 NA other downstream 3987375 3528842 ~ 3542536 (-)
G10478 NA other downstream 4494728 3034422 ~ 3035183 (-)
AMCG00016029 NA other downstream 4683554 2784125 ~ 2846357 (-)
AMCG00016110 ufm1,LOC107701138 other upstream 106431 7680911 ~ 7753437 (-)
AMCG00016119 NA other upstream 544741 8119221 ~ 8124033 (-)
G11326 NA other upstream 617066 8191546 ~ 8194432 (-)
AMCG00016134 NA other upstream 1249065 8823545 ~ 8827760 (-)
AMCG00016176 NA other upstream 3259932 10834412 ~ 10847811 (-)

Expression


Co-expression Network