AMCG00016109 (trpc4b,LOC107752869,LOC107704724,LOC107588262,LOC107730855,LOC107683445)


Basic Information

Item Value
gene id AMCG00016109
gene name trpc4b,LOC107752869,LOC107704724,LOC107588262,LOC107730855,LOC107683445
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 7796925 ~ 7812179 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016109
ATGGCGCAGCTGTATTACAAACGGGCGGACAATTCATCCTACAGAGACCGCATCCCTCTCCGGATAGTGCGAGCCGAGTCGGAGCTCTCCCTCTCAGAGAAAGCCTACCTCAGTGCTGTGGAGAAGGGGGACTATGCCAGCGTGAAGCAAGCTCTGGAGGAGGCAGAAATctatttcaaaatcaatattaactGCATCGATCCTCTGGGCAGAACGGCTTTGCTTATAGCCATTGAGAACGAGAACCTGGAGATCATTGAGCTCCTGCTGAGCTTCAACGTCTATGTGGGAGATGCTCTCCTCCATGCCATCAGGAAGGAGGTAGTTGGGGCCGTGGAACTTCTGCTTAATCATAAAAAACCCAGCAGAGAAAAGCAGGTTCCGCCCATACTGCTGGATAAGCAGTTCTCAGACTTCACGCCTGACATCACCCCCATTATCTTGGCTGCGCACACCAACAACTATGAGATCATCAAGATGCTGGTGCAGAAGGGGGTCTCCGTGCCCCAGCCACATGAGGTCCGCTGCAACTGCGTGGAGTGCGTGTCCAGCTCCGATGTGGACAGCCTCCGGCACTCGCGCTCCCGACTGAACATCTACCGGGCCCTGGCCAGCCCCTCTCTGATCGCCCTGTCCAGCGAGGATCCCTTCCTCACCGCCTTTCAGCTGAGCTGGGAGCTGCAGGAGCTCAGTAAGGTGGAGAACGAGTTCAAGTCGGAGTACGAGGAGCTCTCGCACCTGTGCAAGCAGTTTGCCAAGAACCTGCTGGACCAGACACGGAGCTCGAGGGAGTTGGAGTTGATCCTCAACTACCGCGACGATATTTGCCTGCTGGAAGACGAGCCCAACAATGACCTGGCCAGATTAAAGCTCGCCATCAAGTACCGTCAAAAGGAGTTTGTGGCCCAGCCGAACTGTCAGCAGCTTCTGGCCTCTCGCTGGTATGACGAGTTCCCAGGATGGAGAAGACGCCACTGGGCCGGAAAATTCCTGACCTGTATCTTTATTGGACTCCTGTTTCCAGTATTTTCGGTCTGCTATCTGATTGCCCCCAAAAGCCGCTACGGACTTTTCATCCGGAAACCATTCATAAAGTTCATATGTCACACGGCGTCATACTTGACTTTTCTCTTACTGCTGCTTTTGGCGTCACAGCATATTGTAGAAACTGACCGTAACAGACAAGGTCCTCCACCAACTAACGTGGAGTGGATGATTCTACCCTGGGTTCTAGGGTTTATATGGACTGAAATCAAACAGATGTGGGATGGTGGACTTCAAGATTACATCCATGACTGGTGGAACCTTATGGATTTTGTAATGAATTCCCTGTACCTGGCCACTATTTCTCTTAAAATTGTAGCCTTTGTAAAGTACAGTGAATGCAAAGACCGGAAGGATTGGGAGATGTGGCACCCTACCCTTGTGGCCGAAGCCGTCTTTGCTATTGCAAACATCTTCAGCTCGTTGCGACTGATCTCACTTTTCACCGCCAACTCCCATCTCGGGCCTCTCCAGATCTCTTTGGGCAGGATGCTGCTGGACATCCTGAAATTCCTTTTCATTTACTGCCTGGTACTGTTATTTGAGACCTTGCAGTCTTTATTCTGGTCCATATTTGGATTGATTAATCTTTATGTGACGAATGTGGACCCTCAACATGAGTTTACAGAGTTTGTGGGGACCACCATGTTTGGCACCTACAACGTGATCTCCCTTGTGGTGTTACTCAACATGCTAATTGCCATGATGAACAACTCCTATCAGCTTATTGCGGTACGTATTACATAG

Function

symbol description
trpc4b Enables cation channel activity. Acts upstream of or within cation transport. Is spanning component of plasma membrane. Is expressed in integument; olfactory bulb; and olfactory placode. Orthologous to human TRPC4 (transient receptor potential cation channel subfamily C member 4).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: short transient receptor potential channel 4-like

GO: NA

KEGG:

id description
K04967 TRPC4; transient receptor potential cation channel subfamily C member 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016109 True 1791 mRNA 0.51 6 7796925 7812179

Neighbor

gene id symbol gene type direction distance location
AMCG00016100 NA coding upstream 378447 7403724 ~ 7418478 (+)
AMCG00016099 arfip2b,LOC103365243,LOC108276920,LOC107718740,LOC107555180 coding upstream 400666 7366296 ~ 7396259 (+)
AMCG00016102 dchs1,LOC103363423,LOC105909256 coding upstream 606809 7187185 ~ 7190116 (+)
AMCG00016098 NA coding upstream 686076 7102201 ~ 7110849 (+)
AMCG00016104 NA coding upstream 743377 7047120 ~ 7053548 (+)
AMCG00016115 NA coding downstream 35182 7847361 ~ 7871509 (+)
AMCG00016116 NA coding downstream 201640 8013819 ~ 8030218 (+)
AMCG00016117 alg5,LOC102793295 coding downstream 222724 8034903 ~ 8044945 (+)
AMCG00016112 NA coding downstream 236613 8048792 ~ 8051720 (+)
AMCG00016113 smad9,LOC107728873 coding downstream 269966 8082145 ~ 8092799 (+)
G11226 NA non-coding upstream 38200 7758475 ~ 7758725 (+)
G11210 NA non-coding upstream 175368 7620862 ~ 7621557 (+)
G11202 NA non-coding upstream 199600 7527047 ~ 7597325 (+)
G11197 NA non-coding upstream 275345 7520198 ~ 7521580 (+)
G11195 NA non-coding upstream 285719 7510835 ~ 7511206 (+)
G11246 NA non-coding downstream 154809 7966988 ~ 7967311 (+)
G11248 NA non-coding downstream 155415 7967594 ~ 7967898 (+)
G11287 NA non-coding downstream 281621 8093800 ~ 8095204 (+)
G11308 NA non-coding downstream 326536 8138715 ~ 8139223 (+)
G11363 NA non-coding downstream 621409 8433588 ~ 8475800 (+)
AMCG00016101 trim3b,LOC108423836,LOC103363426,LOC107701140,LOC107720632 other upstream 318339 7446450 ~ 7478586 (+)
AMCG00016103 NA other upstream 494883 7269855 ~ 7302042 (+)
AMCG00016091 NA other upstream 772074 7022147 ~ 7024851 (+)
G10981 cct8,LOC107693911 other upstream 1131377 6664086 ~ 6665548 (+)
AMCG00016079 NA other upstream 1135257 6641658 ~ 6661668 (+)
AMCG00016136 NA other downstream 1256102 9068281 ~ 9089033 (+)
G11509 NA other downstream 1287241 9099420 ~ 9100036 (+)
G11545 NA other downstream 1411233 9223412 ~ 9226245 (+)
AMCG00016159 ubl3,LOC107578048,LOC106604009 other downstream 1747285 9559464 ~ 9591649 (+)
G11660 NA other downstream 1786636 9598815 ~ 9599156 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008648 trpc4b coding NC_007126.7 CM002899.2 32642878 ~ 32700782 (+)
grasscarp (Ctenopharyngodon idella) CI01000304_11924813_11936040 TRPC4B, TRPC4, TRPC4A coding CI01000304 null 11924384 ~ 11936358 (-)