AMCG00016111


Basic Information

Item Value
gene id AMCG00016111
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 8030925 ~ 8034752 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016111
ATGGTGAGCTCGCTGGCGCCTGTTTCACGTGGTGCATCGCAACAGCATGGCGGCTGGATTCAAAAAGAAAACTGCAGGCCAGATGGAAGGGAGCTTGGTGAATTTCGAACCACTACACTCAATATCGGTAAGCATTTAGGGAGCATCCAACAGTTTTTGTCCCCCCAATATATGACATTTGATCTTGACACTTTTTTAGGTTCCATTTCCACAGCTGACGGTTCTGCCTTGGTGAAGATCGGGAATACCACTATAATATGTGGAATCAAAGGGGAACTAACAGCTCCTCCAGTAGACACGCCTAATAAAGGTTATATAGATTTGCCCCCACTCTGTTCCTCCCGCTTTCGCCCTGGTCCGCCGGGAGAACAGGCACAAGCCGCCAGCCAGTTCATCGCCGACGTCATTGAAAGttcaCAGGTGATGCATAGAGAAGACCTCTGCATTGAGAAAGGAAAGCTCTGCTGGGTCCTGTACTGCGACATCATGTGTCTCGACTATGATGGCAATATTCTGGATGCCTGCATTATCGCTTTGCTGGCAGCACTTAAAAATGTCCAGTTACCAGACGTCcacataaacaaagaaacagatcTTGCAGAAGTAAACCCGAAACAGAAGACGCAACTAAATGTCACAAAAAACCCAGTTGGCTCTTCATTTGCCATTTTTGATGACACGGTTATAATTGTAGATCCTACGGCAGAAGAAGAGAATCTATCGACAGGCATGATTACAATAGTTACAGATGAGGATGAGAAGCTTTGTGCAGTCCACAAACCAGGAGGAACTGAACTGTCAGGAGAAAAACTTCAAGACTGCATCAGTCGAGCCATGACAAGAAACCGGGAAGTGAGTAAGCTGATAAACGAAGTGATGAACAGTGTAAAATCAAAGTAG

Function

GO: NA

KEGG:

id description
K12586 RRP43, EXOSC8, OIP2; exosome complex component RRP43

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016111 True 900 mRNA 0.46 10 8030925 8034752

Neighbor

gene id symbol gene type direction distance location
AMCG00016107 frem2b,LOC106581006,LOC106612873,LOC108433801 coding downstream 414627 7608507 ~ 7616298 (-)
AMCG00016108 LOC107730863,LOC107704782,LOC103363427,LOC101479746,LOC102203644 coding downstream 456445 7529911 ~ 7574480 (-)
AMCG00016105 NA coding downstream 504671 7520166 ~ 7526254 (-)
AMCG00016106 NA coding downstream 522830 7473851 ~ 7508095 (-)
AMCG00016097 synj1 coding downstream 933398 7061817 ~ 7097527 (-)
AMCG00016118 NA coding upstream 103982 8138734 ~ 8139063 (-)
AMCG00016125 NA coding upstream 320927 8355679 ~ 8357486 (-)
AMCG00016127 NA coding upstream 381498 8416250 ~ 8433185 (-)
AMCG00016129 LOC106612894,LOC102298628,LOC102206684,LOC101482631 coding upstream 400368 8435120 ~ 8494583 (-)
AMCG00016130 nbeaa,nbea,LOC107691681,LOC107588988 coding upstream 559338 8594090 ~ 8644348 (-)
G11247 NA non-coding downstream 63620 7967071 ~ 7967305 (-)
G11243 NA non-coding downstream 158156 7872417 ~ 7872769 (-)
G11216 NA non-coding downstream 410072 7620640 ~ 7620853 (-)
G11215 NA non-coding downstream 410928 7619698 ~ 7619997 (-)
G10956 NA non-coding downstream 1807696 6222863 ~ 6223229 (-)
G11288 NA non-coding upstream 59048 8093800 ~ 8095204 (-)
G11300 NA non-coding upstream 90238 8124990 ~ 8125383 (-)
G11309 NA non-coding upstream 101662 8136414 ~ 8138670 (-)
G11314 NA non-coding upstream 138937 8173689 ~ 8173974 (-)
G11345 NA non-coding upstream 285945 8320697 ~ 8321042 (-)
AMCG00016110 ufm1,LOC107701138 other downstream 277488 7680911 ~ 7753437 (-)
AMCG00016074 NA other downstream 3101025 4903856 ~ 4929900 (-)
AMCG00016049 NA other downstream 4110422 3886298 ~ 3920503 (-)
AMCG00016046 NA other downstream 4488389 3528842 ~ 3542536 (-)
G10478 NA other downstream 4995742 3034422 ~ 3035183 (-)
AMCG00016119 NA other upstream 84469 8119221 ~ 8124033 (-)
G11326 NA other upstream 156794 8191546 ~ 8194432 (-)
AMCG00016134 NA other upstream 788793 8823545 ~ 8827760 (-)
AMCG00016176 NA other upstream 2799660 10834412 ~ 10847811 (-)
AMCG00016194 NA other upstream 3731400 11766152 ~ 11781547 (-)

Expression


Co-expression Network