AMCG00016115


Basic Information

Item Value
gene id AMCG00016115
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 7847361 ~ 7871509 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016115
CCAGCCTGCAGGGTGAATAAGGATGAAGCTCCTCTTTGTGGCCGCCTTCACTGTTTTTGTCCTCTCTGCCTTTGACCAGGCAGATTCTTCTGCTTATGACAAGATTGTAACCCACAGTCGAATTAGGGCCAAGAATGAAGGTCCGAATGTGTGCGCCCTTCAACAAGTTATGGGAACCAAAAAGAAATACTTCAGCACCTGCAGGAACTGGTACCAGGGAACAATCTGTGGCAAAAAGGCCACAGTGCTGTACGAATGCTGCCCAGGATACATGAAATTGGATGGGATAAGAGGCTGCCCTGCAGTGGCTCCTATTGACAATGTATATGGAACTCTTGGGATTATTCAGGCCAGTACAACTCAAGATTACTCTGATATCTCAAAGCTGAGGGAGGAGATTGAAGGACAGGGATCCTACACCTTCTTTGCTCCCAGCAATGAGGCTTGGGACATGCTAGACCCTGAGGTGAGGGCTGGGCTGGTGAGCAACGTGAACATTGAACTGTACAACGCTCTGCATTATCACATGGTCAACAAACGTCTTCTGACCAAAGATCTGAAGAACGGCATGAACGTGCAGTCCATGTACAATGACATGGGTCTGTTAATCAACCATTACTCCAATGGGGTTGTGACTGTCAACTGCGCTAGGATCATCCATGGAAATCAGATAGCCACTAATGGGGTTGTTCACATGATTGACAGAGTCATCACTGGAGTCGGAAACACCATTCAGGACGTGATTGATGTTGAAGATGACCTGACTTCCCTGAGTGCTGCTGCTATGGAGTCAGGGCTGCTGGAGCAACTGGGCCAACCTGGACACTACACTGTCTTCGCTCCCACTAATGAGGCCTTCGAGAAGCTCCCCAGATCTGTGCTGGAAAGGATCATGAGAGACAAGGTGGCCCTCAAAGCGCTGCTGAAATTCCATATCCTGGACTCTGTGCAGTGCTCTGAGGCCATCATGGCTGGCAGCTCCTATGAGACCCTGGAGGGCAACAATATTGAGATTGGCTGTGATGGTGACAGCCTAACAGTGAACGGGATCAAGATGGTGAAGCGCAAGGATATCGTCACCTCCAACGGTGTCATCCACTTAATCGACCAGGTTCTTATCCCCGATTCAGCTAAGCAGGTTATGGAGCTGGCTGGACCTTCTCAGTCCTCCTTCACTGACATGGTGGCTCAGCTGGGCCTGGCATCTGAGTTTAGAGCAGATGGGGAGTACACCTTGTTGGCCCCACTGAATGCAGCTTTCACTGATGAAGTCATGCGCATGGACCAGCGCCGCCTGAGGTTCATTATAGAGAATCACATCCTGAAGCTGAAAGTTGTCCTTAGCCAGCTGTACAACGGCCAGCGCCTGGAGACACTGGGAGGGAAGTTCCTCAGAGTCTTCATCTACCGCACAGCTGTCTGCATTGAGAATTCCTGTATGGTGAGAGGGAGCAAGGAAGGAAGAAACGGCGCCCTCCACCTCTTCAGAAACATCATCAAACCAGCCGAGAATTCAATGTTTGAAATCCTGACAAAGGATGGCCGATTCAGCGTGTTCTTGCAGCTTTTGGAGGTGGCTGGCCTGACTGATCTGCTCCGTCAGGAAGGAGACTGGACTCTCTTTGCGCCGACTGATGATGCCTTCCAAGGTCTGAGTGAGCAGGACATTCGTCTTCTTTCAAGTGACCCCAATGCTCTCAGGACCATTCTCCTGTACCACTTCAGCAATGGAGTCTTCATCGCTGGCGGAATGGAGGGTGGTGTCACCAACCTTCTGAAATCCATTCCAGGCTACAACCTCAGGGTTAACGACTCTATTCTGGTGAATGAAGTGAAAGCAGCTGATAGTGATGTCATGGCGACCAATGGTGTGGTTCACGTTGTCAAATCTCTGCTGTATCCAGGAGatGTTCCTGTTGGAGACCAACAGCTCCTTACCATCCTGAAGAGACTGATCAAATACATCCAGATCAAGTACATTCAAGGATTCAGATACAAGGAGATTCCTCTCACCTTCCTGAGACGGACGATTATCACAGAGACAAAACCAGAGATTACAATAATTGGATCAGGGTCCACCAAAGTAATCCAAGGAGTTCCAGATTCCAGTTCCACTATTACCAAAGTGACCCGCATCATCCAAGGAGAACCCACTATTACCAAAGTGACCCGCGTCATTGAGGGAGAGCCCAGCCTGACTAAAGTGACCCGCGTCATCGAGGGAGAGCCCAGCCTGACTAAAGTGACCCGCGTCATCGAGGGAGAGCCCAGCCTGACCAAGGTCACAAGAGTCATTGAAGGTCCTCAGTACACAGTGACACGTGTCTCCTCTGATGGGCACTTCGACGCGGATGCCGAGATTAAGAAGCTTCTTGAAGAAGACATTTCCAAGGTTACGAAGCTTCTTGAAAGTGATGCACACTTACTTGAAGATGAAGATATCAAAAGACTCCTTCAGGGAGCAGGAACAGGGTACACCAAAGTCACCAAAGTGATTCAGGGCGAGCCACAAATCATTGAAGGACCCAGCTATTCGCAGTTTGCGAGCATTGAAGGGGAACCTCAGCTCATTGGTTCCGAGTCTGAGAGAGTCACGAAAGTCATTCAAGAAGGACAAGAGCAGCAGGCAGGAGAAGGACGAGGCTGGTCCGTCACCACGTCAGACGTCAGCAGTGAATCCaaataa

Function

GO:

id name namespace
GO:0016203 muscle attachment biological_process

KEGG:

id description
K24790 POSTN; periostin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016115 True 2686 mRNA 0.50 25 7847361 7871509

Neighbor

gene id symbol gene type direction distance location
AMCG00016109 trpc4b,LOC107752869,LOC107704724,LOC107588262,LOC107730855,LOC107683445 coding upstream 35182 7796925 ~ 7812179 (+)
AMCG00016100 NA coding upstream 428883 7403724 ~ 7418478 (+)
AMCG00016099 arfip2b,LOC103365243,LOC108276920,LOC107718740,LOC107555180 coding upstream 451102 7366296 ~ 7396259 (+)
AMCG00016102 dchs1,LOC103363423,LOC105909256 coding upstream 657245 7187185 ~ 7190116 (+)
AMCG00016098 NA coding upstream 736512 7102201 ~ 7110849 (+)
AMCG00016116 NA coding downstream 142310 8013819 ~ 8030218 (+)
AMCG00016117 alg5,LOC102793295 coding downstream 163394 8034903 ~ 8044945 (+)
AMCG00016112 NA coding downstream 177283 8048792 ~ 8051720 (+)
AMCG00016113 smad9,LOC107728873 coding downstream 210636 8082145 ~ 8092799 (+)
AMCG00016114 NA coding downstream 241512 8113021 ~ 8117376 (+)
G11226 NA non-coding upstream 88636 7758475 ~ 7758725 (+)
G11210 NA non-coding upstream 225804 7620862 ~ 7621557 (+)
G11202 NA non-coding upstream 250036 7527047 ~ 7597325 (+)
G11197 NA non-coding upstream 325781 7520198 ~ 7521580 (+)
G11195 NA non-coding upstream 336155 7510835 ~ 7511206 (+)
G11246 NA non-coding downstream 95479 7966988 ~ 7967311 (+)
G11248 NA non-coding downstream 96085 7967594 ~ 7967898 (+)
G11287 NA non-coding downstream 222291 8093800 ~ 8095204 (+)
G11308 NA non-coding downstream 267206 8138715 ~ 8139223 (+)
G11363 NA non-coding downstream 562079 8433588 ~ 8475800 (+)
AMCG00016101 trim3b,LOC108423836,LOC103363426,LOC107701140,LOC107720632 other upstream 368775 7446450 ~ 7478586 (+)
AMCG00016103 NA other upstream 545319 7269855 ~ 7302042 (+)
AMCG00016091 NA other upstream 822510 7022147 ~ 7024851 (+)
G10981 cct8,LOC107693911 other upstream 1181813 6664086 ~ 6665548 (+)
AMCG00016079 NA other upstream 1185693 6641658 ~ 6661668 (+)
AMCG00016136 NA other downstream 1196772 9068281 ~ 9089033 (+)
G11509 NA other downstream 1227911 9099420 ~ 9100036 (+)
G11545 NA other downstream 1351903 9223412 ~ 9226245 (+)
AMCG00016159 ubl3,LOC107578048,LOC106604009 other downstream 1687955 9559464 ~ 9591649 (+)
G11660 NA other downstream 1727306 9598815 ~ 9599156 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_007898 tgfbi coding NC_007125.7 CM002898.2 26511041 ~ 26536504 (-)
grasscarp (Ctenopharyngodon idella) CI01000095_01070767_01087358 POSTNB, POSTN, POSTNA coding CI01000095 null 1070696 ~ 1087652 (+)