AMCG00016116


Basic Information

Item Value
gene id AMCG00016116
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 8013819 ~ 8030218 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016116
cAACAAGTTTTGGAATATGCATTGGACCGGGCAGAgTACATTGTGGAAAGTGCACGACAACGACCCACCAAAAGGAGAAGCTCGTCGAGTGGGAGGAAATCTTTGAATCAGAAGCTATATGAGCTGTAcattgaggaatgtgaaaaggAGCCTGAGGTCAAGaagCTCAGGAGAAATGTCAATCTGCTGGAGAAGCTGGTTATGCAAGAGTCTGTGTCCTGTCTCGTAGTCAATCTGTACCCCGGGAACGATGGCTACTCATTGATGCTCAGAGGAAAGAATGGCTCAGatTCAGAAACCATTCGTTTGCCGTACGAGGAAGGGGAACTCTTGGAGTATCTTGATGCAGAGGAACTGCCTCCGATTCTGGTAGACCTTCTGGAGAAGTCCCAGGTCAATATATTCCACTGCGGGTGTGTCATTGCTGAAATCAGGGACTATCGCCAGTGCGGCCACACGAAAATGCCAACCTGTCAAAGTCGATACATTCTGCTACGACCAACAATGCAGACCCTGATTTGCGATGTTCATGCGATGACAAGTGACAACCACAAATGGACACAGGATGACAAACTACTCCTGGAAAGCCAGCTGATTTTGGCCACAGCAGAGCCCCTGTGCCTAGACCCCTCCGTCTCCGTCACCTGCACCGTAAACCGGCTCCTCTACAACAAGCAGAAAATGAATACACGTGCAATGAAACGACAGCAAGAAATGGCCCACTTCCCAACCCCCCCGCAGCTGAAACTGTTCGACTATTTGCAGAAGAGGAAGGAAAGGAAGCCAGCGCCCCCTATTGACCTGAAAATCTCCAAAGCTGGAAACTGTGTGGACATGTGGAAACAAAGCATCTGTCAGCTGAGTGCGCCTTCTGAAATTGATGTCGAAAAATATGCCATTGTGGAGAAATCGATCAAGCTTGAGGAGTCCCAGCCGACAGTCTGGCCAGCACACgagGTGAAGGATGATTATCTTTTTGAATGTGAAATGGGCAGCCAggttcaaaaaacaaaagtcactATTTACCAGTCAGTGGGCGACCCTCTGGTCTTCCTAATTGGTTCAAAGATAGATGCTGATCAGTTTATTAACCAGTACAAAGATGTCTATGAGAAAGATGTCAAGTGTGCGGTAAAGATGACTCATACCTCAGGTGGCGCAGGAAGCCAACTTTCTCCTGGAAAGGAAATGGagCAGACGGATGGATTTTCTGCAATTGTTCAGTCCTCTGTATTGGGGAAAGGTGTGAAACACAGACCCCCTCCCATCAAACTACCTCCTGGATCAAGCAGCAGTTCTTCAGgCAACCCTTACAGCTCTCAACCATCAAGTGGGCATCTCAAGTCCCCCACTCCGCCTCCCTCCAAGGCCCCGGCGCTTTCCCGGAAACACTCGATGGAGCTGAACCAAGTCAGTCTGCTGTCTCCCGCCGCCCTCTCCCCGGTGGGCTCGTCTCAGAGATCAGGCACTCCAAAACCATCCACGCCAACGCCCACCAACACACCCTGTTCCACCCCCCACCCTACGGACATCCAGACCTCCACCCCCACGGTGACACCCTCTGCCACCCCAACTCCCCAGGACTCAGCAATGACCCCCCAGACCACCCTGCTCACCCCTTTTGCCCAGCAGCAGATGGCACTGAGCCAGGCCCTGCCTGTCATGACCATTCCCCTTTCCACTATGGTCACCTCCATCACCACCGGTACCTCCAGCTCGCAGGTGATGACCAACCCAGCCGGACTCAACTTCATCAATGTCGTCAGCTCAGTTGGTCCTCCAGCTCTGATGAGTGGCTCTAACCCAATGCTGGGCTGCAGCCCTGGCGCCATCACCTCTGCAGGCATCAACTTGAGTGGGATCCTCCCCCCAGGAGGTCTGGTGCCAGGTTCTCTGCCAGCTACCATGCAGTCTGCAGCCCAAGCAGATCATTTTGTTTCAACAAACTCCTCAGGTCTCCGGCCCCTGAATCTTCTTCAGATCCCCGCTGGGCCCCTCATATTCAAccccctgcagcagcagcagctctccCAGTTCTCCCCTCAGCAGCAGTCCAGTCAGTCGGCCACGTCCAGCCCTCAGCAGCCAGGAGAACAGGCTTCTGATCAAGGAGCTTCCAGTCAGGACCAAGGTCTCAGCAGCCAGCAGACTGCTGTCATTAACCTAGCAGGAGTGGGTGGCTTCATGTCCCCCCAGGCTGCAGTTGCGATTCTTGCAGCACCAAATGCAGCAGCAAATGGCTATGGCGGCAGCGGCAACACAAGCGGCGCAACTTCGACAGCATTCAGGCAGCCAACCAAAAAATAA

Function

GO: NA

KEGG:

id description
K21245 SUPT20H; transcription factor SPT20 homolog

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016116 True 2307 mRNA 0.53 22 8013819 8030218

Neighbor

gene id symbol gene type direction distance location
AMCG00016115 NA coding upstream 142310 7847361 ~ 7871509 (+)
AMCG00016109 trpc4b,LOC107752869,LOC107704724,LOC107588262,LOC107730855,LOC107683445 coding upstream 201640 7796925 ~ 7812179 (+)
AMCG00016100 NA coding upstream 595341 7403724 ~ 7418478 (+)
AMCG00016099 arfip2b,LOC103365243,LOC108276920,LOC107718740,LOC107555180 coding upstream 617560 7366296 ~ 7396259 (+)
AMCG00016102 dchs1,LOC103363423,LOC105909256 coding upstream 823703 7187185 ~ 7190116 (+)
AMCG00016117 alg5,LOC102793295 coding downstream 4685 8034903 ~ 8044945 (+)
AMCG00016112 NA coding downstream 18574 8048792 ~ 8051720 (+)
AMCG00016113 smad9,LOC107728873 coding downstream 51927 8082145 ~ 8092799 (+)
AMCG00016114 NA coding downstream 82803 8113021 ~ 8117376 (+)
AMCG00016121 NA coding downstream 144756 8174974 ~ 8178038 (+)
G11248 NA non-coding upstream 45921 7967594 ~ 7967898 (+)
G11246 NA non-coding upstream 46508 7966988 ~ 7967311 (+)
G11226 NA non-coding upstream 255094 7758475 ~ 7758725 (+)
G11210 NA non-coding upstream 392262 7620862 ~ 7621557 (+)
G11202 NA non-coding upstream 416494 7527047 ~ 7597325 (+)
G11287 NA non-coding downstream 63582 8093800 ~ 8095204 (+)
G11308 NA non-coding downstream 108497 8138715 ~ 8139223 (+)
G11363 NA non-coding downstream 403370 8433588 ~ 8475800 (+)
G11506 NA non-coding downstream 1065575 9095793 ~ 9096050 (+)
G11507 NA non-coding downstream 1066371 9096589 ~ 9096811 (+)
AMCG00016101 trim3b,LOC108423836,LOC103363426,LOC107701140,LOC107720632 other upstream 535233 7446450 ~ 7478586 (+)
AMCG00016103 NA other upstream 711777 7269855 ~ 7302042 (+)
AMCG00016091 NA other upstream 988968 7022147 ~ 7024851 (+)
G10981 cct8,LOC107693911 other upstream 1348271 6664086 ~ 6665548 (+)
AMCG00016079 NA other upstream 1352151 6641658 ~ 6661668 (+)
AMCG00016136 NA other downstream 1038063 9068281 ~ 9089033 (+)
G11509 NA other downstream 1069202 9099420 ~ 9100036 (+)
G11545 NA other downstream 1193194 9223412 ~ 9226245 (+)
AMCG00016159 ubl3,LOC107578048,LOC106604009 other downstream 1529246 9559464 ~ 9591649 (+)
G11660 NA other downstream 1568597 9598815 ~ 9599156 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location