AMCG00016120


Basic Information

Item Value
gene id AMCG00016120
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 8178707 ~ 8194672 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016120
CGCAATTAAGAGGTTAGGATAAGCAAGACATCACTGTAATCTCAGTTTAATGGTGAACCGTGTTTTATGTGGGATCAGCGCGACTGCCTGTAGAGACGAAGGGTATTTACAGTTTTGCGACAATGTGGAGGATCATGTGACGTTGTGTTTTCAGACCGGAGTTTGTTGTTTCTGTCAACAGGTATAAAGACACGAAGTGACTCCGGATCGATACATTGTGGATATACAGCGGGTCTACCCTTAAAAAgGTATGGAAAAAGCTAAACCGGAGGAGTGCAATGATGCCCGGCTGCAGATCATCAAAGAGGGCTACCAGAAGGCCTTTGAGTTCATCAACATGGGGCTGACGGAGGATGAGGCCGGGCACAAGGCGGAGGCCCTGGCGCTCTACAGACAGGGGCAGCAGCACCTGCTCATGGCGATCAGCATTCCCTCCCAGGGGCCCGAGTGCACGGGGCCCATGTGGGAGTCAGCCAAGCAGATGCAGCAGAAGATGCAGGAGACCCTGTCCAACATTACCACTCGCCTCCGCATACTGGAGCCTGGGGAGGCCACCCCAACCCCGGGCATCTCCATGGGGGTGGGACCGGCCGCCGGATACTGTGGACAACTGTACCCGCAACTGCCTTTGAAGGAAAAGACAGATAGACCACCTGCGCCAAAGGTCCTCTTCCCTGAGGGGCAGCCTCCCGGGGCTGTAGGTGGGGCTCCCTTTGGTGCCCAGGCAGCTTACCCCTCACTCTCCCCCACGCGCCAGGGAGTCCCCGGCGAGCTCCCCCCGGCCTACTCCCCGCAGGCTGCAGACGGCCACCTCAGCATTTCCTACGGGACGGATTCCGGCGAGCTGTCCCTGGTCGGGGACGATTTCTACAGCCAGACGCCCAGCCACCCACCGCCCCTGCAGAGCATGGGGGAGGATGGGGAGGAGCTGCTGTTTATCCAGCAGGGCGTGCAGATCTTCTTCGTTTCACCTGAGGGTCATGTGAGTGCCCCTTCCTACCCGGGGCACCTGCGCATTGTCAAGTTCACCAGCTCCCACCCGGATGTGGCCCCCAATCGGCCCCCGGCATTCCTACAGGTTTGCGACTGGCTGTACCCATTGATGTCTACAGAGTCCCCCGTCCTGCTGTGTAACACGGGGGTTTACATGTTCCCTGACATGATGGCACAGGTCCCGGGGTCCTACGTGGGGGTGGTGCTCTCCGCAGAACTGCCTATGTCGGAGAGAGAGCTCTTCCAGGACCTGATGTCTCAGCTGACTGACTTAAGAGTGCAGGCCCCTGAAGAAGCAGCTGAAACCATCAACCTGCCCCAGAAGGTTCCTATCATACCGCCTGAAGTGGATGTCGAGGAAATGGAGAAGGCCCTGCCGGACTGGAGTGAGAAGGTCGCTCATGGCATCCTCACAGGAGCGTCTTGGCTCAGCTGGGGTCTGGTTAAAGGGGCGGAGTACACGGGAAAAGCCATCCACAAAGGAGCCTCCAAACTGAGGGAACACATCAACCCTGAGGACAAGCCCGCCCAGGTCAGCCCCTCCGTGGCTAAGGGGCTGCACGTCGCAAAGCAAGCCACTGGGGGGGCGGTGAAAGTCAGCCAGTTTCTGGTGGACGGAGTGTGCGCCGTGGCCAGCTGTGTGGGGAAGGAGTTGGCTCCCCACGTGAAGAAGCATGGCAGCAAACTGATCCCCGAATCCCTGAAGAAAGACAAGGACGGCAGGTACGGTGCTGCCGCCGGCCAGGCCACAGATAACGCCATGAACTCGGCCATCAACGTGGGGGTCACGGCATTCAACATCGACAACCTAGGGATCAAGGCGGTGGTGAAGAAGACGGGCAAAGAAACGGCCCACGCGCTCCTGGACAATTACAAGATTCAggagaaggaagagaaaaaggAGGGGAAGTAACCCTGCTCTCAGTACCACTCTAGTGCCCTTTACTTCTAGCCTTAATATTATAAAAGCAGTTAAAGgcttatttaatttagattcaACAAGTGTGCACATGAGAAttctaatacatttgtttacactGCTACTTGAGGTCTGCTAGAAAGCACTTTAAAGTGACAAATACtgtatggaagaaaaaaaaaaagctcatttGGAAGGGTGGGGTGCAGTGTCATAGCCTTATTAGACTTGTATCCACATGCATCCCTATGAAGATGGGTTTTGAAGATTAATGATGCTCCTGTATGCAATATAtatgcagattttctttttaagtggGGCAAAATTCCAAATGGTAGGTGAAGAAAAGTTTCcttgtatttatattcttattaCCAAATGTATTGagacaaaagacaaatacacacagagcaCTTGTTCAGTGTTTTAAGGTGTGGACATGGACATTATGACTTATGCAGGCTTTTGACAGACATATTGATTTCTGTGCGCTCTGCCTAAAATGccattccagttcatcccagataTGTTCCATCAGGACTCGACACAGGCCATGTTGTTGTTCTCTTGCAAGCACTATGTTCGTCCTCTACCCCAGCTCTGTGATAGTGTGATATCATGGTGGTAGATGGACACCGACATCAAAAATGTCAACGGCTCCCATTAGAAAACAAACTAGccaaactaaaaaaagaaaacctccaCGCAGCACATGACCGCTGCTGTGCTCCATTACCTGTGGTGATGAAATTCCTAGTCCGTGTGGGACACACAATGTGTGCTGTGGTGGATTCTGCCGTTTCTGCGACTATAAGCAATAAAAGATAAATCGGTGGTTTTGCTAGAGAGAAGCATGAACTCCTGCCAACCAGAAGTACGTCTTGTGTGTTCCTTGCAAAGTTGTCACGTATAAAATAACCACCATTGTATAGACTTGaaattctaaaaacaaaaaagttctgcaaagttttttttaaactcacagagatatttaatttccataaacatacaaagaatcccattacaaatatttacaaagtcTCTATGTGCTGATTGTCTGGGTTGTACACGGATTTAAAGGTCCAGGAGCTCTCTGCCACATTTCGCAGTTGCTACTCTCTCCAGACGAGACTGGGCCTGGTCAAATGACTTGTTAAGTCTACTCAGGGCTAGATTTTGTTCCACCATCTTATTCTGGTATCCTGCAAGTTTGCTCGTTTCCTTCGAGAGTTTTTCTCAGCTCAGCAATGGCTGCGTATCCAATCTTCGCCTCTTCCGAGCCACGGTCCATTGTCTCCGCTTGTGATCCGCGGCGACAGACGGGTCCGACTGAGGGATGAAGAGGCGCGTCGTCTTCACACCGCGCACGCGCAGCCTCGACTTGAACCTCCCGCGACTTTTCAAAGCGCTGCGGGCTGGGAAGCACTTCCGGGTCAGAGGTGAAATGTCTCCATCTCCCTGGAAACGGGTGAAACAAATGTGAGGATGGAGGACAGACAGCAGGGACAGGATGGACAGCACAGACAGCTCACACAGCTCACACAGCACAGGCCCTGCGATGCGCCTCGGCTGCGGCTGGAGATCGAGCAGGAGAAGCAGATGAAGTGAGTTTCTGCACTT

Function

GO: NA

KEGG:

id description
K19366 SPG20; spartin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016120 True 3532 mRNA 0.52 9 8178707 8194672

Neighbor

gene id symbol gene type direction distance location
AMCG00016121 NA coding upstream 669 8174974 ~ 8178038 (+)
AMCG00016114 NA coding upstream 61331 8113021 ~ 8117376 (+)
AMCG00016113 smad9,LOC107728873 coding upstream 85908 8082145 ~ 8092799 (+)
AMCG00016112 NA coding upstream 126987 8048792 ~ 8051720 (+)
AMCG00016117 alg5,LOC102793295 coding upstream 133762 8034903 ~ 8044945 (+)
AMCG00016123 NA coding downstream 4202 8198874 ~ 8202539 (+)
AMCG00016122 NA coding downstream 12167 8206839 ~ 8225134 (+)
AMCG00016126 dclk1,LOC105909296 coding downstream 32459 8227131 ~ 8234032 (+)
AMCG00016124 LOC108433804,LOC107683036,LOC107752421 coding downstream 119471 8314143 ~ 8326539 (+)
AMCG00016128 mab21l1,LOC107730834 coding downstream 328789 8523461 ~ 8524540 (+)
G11308 NA non-coding upstream 39484 8138715 ~ 8139223 (+)
G11287 NA non-coding upstream 83503 8093800 ~ 8095204 (+)
G11248 NA non-coding upstream 210809 7967594 ~ 7967898 (+)
G11246 NA non-coding upstream 211396 7966988 ~ 7967311 (+)
G11226 NA non-coding upstream 419982 7758475 ~ 7758725 (+)
G11363 NA non-coding downstream 238916 8433588 ~ 8475800 (+)
G11506 NA non-coding downstream 901121 9095793 ~ 9096050 (+)
G11507 NA non-coding downstream 901917 9096589 ~ 9096811 (+)
G11508 NA non-coding downstream 902597 9097269 ~ 9097927 (+)
G11510 NA non-coding downstream 906239 9100911 ~ 9101316 (+)
AMCG00016101 trim3b,LOC108423836,LOC103363426,LOC107701140,LOC107720632 other upstream 700121 7446450 ~ 7478586 (+)
AMCG00016103 NA other upstream 876665 7269855 ~ 7302042 (+)
AMCG00016091 NA other upstream 1153856 7022147 ~ 7024851 (+)
G10981 cct8,LOC107693911 other upstream 1513159 6664086 ~ 6665548 (+)
AMCG00016079 NA other upstream 1517039 6641658 ~ 6661668 (+)
AMCG00016136 NA other downstream 873609 9068281 ~ 9089033 (+)
G11509 NA other downstream 904748 9099420 ~ 9100036 (+)
G11545 NA other downstream 1028740 9223412 ~ 9226245 (+)
AMCG00016159 ubl3,LOC107578048,LOC106604009 other downstream 1364792 9559464 ~ 9591649 (+)
G11660 NA other downstream 1404143 9598815 ~ 9599156 (+)

Expression


Co-expression Network