AMCG00016126 (dclk1,LOC105909296)


Basic Information

Item Value
gene id AMCG00016126
gene name dclk1,LOC105909296
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 8227131 ~ 8234032 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016126
ATGTCTttagggagagagatggagttGGAGCATTTCGACGAGCGGGACAAAGCCCAGCGGTATAACCGGGGCAGCTCCCGGGCCAACGGGCTGCCCAGCCCCACGCACAGCGCGCACTGCAGCCTGTACCGGACCCGCACCCTGCAGGCGCTCAGCTCCGAGAAGAAGGCCAAGAAGGTGCGCTTCTACCGCAATGGAGACCGCTACTTCAAGGGGATCGTCTATGCCATCTCGCCCGACCGGTTTAGGTCGTTTGAAGCTCTGCTGGCTGACCTGACTCGGACTCTCTCTGATAATGTCAACCTGCCGCAGGGAGTGAGGACCATCTACTCCATTGATGGCATCAAGAAGGTCTGCAGCTTGGGCCAACTCGTGGAAGGTAAGCTCTCCTGTGGAAGGTGTTCTAAACTGGACTACACGAAAAACGTCAACCCCAACTGGTCAGTGAATGTCAAGACCTTGGTCGCTGCTCGGCCGCCTGCTTCCCTGGGCAGTGCCAAGACCAGTCCCGCGGAGGTGAGGGAGAGCAAAGACTTCATCCGCCCCAAGCTGGTGACCATCATCCGCAGTGGGGTAAAGCCACGCAAGGCTGTGCGCATCCTCCTCAATAAGAAGACCGCACACTCCTTTGACCAGGTGCTGACCGACATCACCGAAGCCATCAagctggactctggagtggtcAAGCGGCTGTACACTCTCGACGGAAAGCAGGTAAGACCACTCCCAGCTGTAATTTGA

Function

symbol description
dclk1 Predicted to enable protein kinase activity. Involved in response to virus. Predicted to be integral component of plasma membrane.

NR:

description
PREDICTED: serine/threonine-protein kinase DCLK1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016126 True 741 mRNA 0.58 2 8227131 8234032

Neighbor

gene id symbol gene type direction distance location
AMCG00016122 NA coding upstream 1997 8206839 ~ 8225134 (+)
AMCG00016123 NA coding upstream 24592 8198874 ~ 8202539 (+)
AMCG00016120 NA coding upstream 32459 8178707 ~ 8194672 (+)
AMCG00016121 NA coding upstream 49093 8174974 ~ 8178038 (+)
AMCG00016114 NA coding upstream 109755 8113021 ~ 8117376 (+)
AMCG00016124 LOC108433804,LOC107683036,LOC107752421 coding downstream 80111 8314143 ~ 8326539 (+)
AMCG00016128 mab21l1,LOC107730834 coding downstream 289429 8523461 ~ 8524540 (+)
AMCG00016132 LOC102798547 coding downstream 554937 8788969 ~ 8809035 (+)
AMCG00016135 LOC104923292 coding downstream 730174 8964206 ~ 8978905 (+)
AMCG00016140 NA coding downstream 883870 9117902 ~ 9119438 (+)
G11308 NA non-coding upstream 87908 8138715 ~ 8139223 (+)
G11287 NA non-coding upstream 131927 8093800 ~ 8095204 (+)
G11248 NA non-coding upstream 259233 7967594 ~ 7967898 (+)
G11246 NA non-coding upstream 259820 7966988 ~ 7967311 (+)
G11226 NA non-coding upstream 468406 7758475 ~ 7758725 (+)
G11363 NA non-coding downstream 199556 8433588 ~ 8475800 (+)
G11506 NA non-coding downstream 861761 9095793 ~ 9096050 (+)
G11507 NA non-coding downstream 862557 9096589 ~ 9096811 (+)
G11508 NA non-coding downstream 863237 9097269 ~ 9097927 (+)
G11510 NA non-coding downstream 866879 9100911 ~ 9101316 (+)
AMCG00016101 trim3b,LOC108423836,LOC103363426,LOC107701140,LOC107720632 other upstream 748545 7446450 ~ 7478586 (+)
AMCG00016103 NA other upstream 925089 7269855 ~ 7302042 (+)
AMCG00016091 NA other upstream 1202280 7022147 ~ 7024851 (+)
G10981 cct8,LOC107693911 other upstream 1561583 6664086 ~ 6665548 (+)
AMCG00016079 NA other upstream 1565463 6641658 ~ 6661668 (+)
AMCG00016136 NA other downstream 834249 9068281 ~ 9089033 (+)
G11509 NA other downstream 865388 9099420 ~ 9100036 (+)
G11545 NA other downstream 989380 9223412 ~ 9226245 (+)
AMCG00016159 ubl3,LOC107578048,LOC106604009 other downstream 1325432 9559464 ~ 9591649 (+)
G11660 NA other downstream 1364783 9598815 ~ 9599156 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location