XLOC_006148 (si:ch211-67f13.7)


Basic Information

Item Value
gene id XLOC_006148
gene name si:ch211-67f13.7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 35955562 ~ 35961435 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012102
ACAAATAATCACCTGTTCATCAACCGAACCTCTTTCAAAAGACTTTCTAGTTGTGAAGCTTTCACCTGTAGCATAAACTATACATAAAATATACGTAAAGCTTAAAAAAGTTGTAAAGCACAAGAAAAATAATTTACAGATACACAGGTCATTGATATGAACCGCATTACTCGCGCACTTCTAGGTTCGATTCTTGTCATTTTCTCCAGCCCAACACTGAACAGCGGCTCATCTGGGTTAGATGAGAGAGTCGGTCGCCCACAAACTCGACCTGTCTCCGGGAAACTTCTAGTGCGGGATTCGTTCACAAACAGGAGGCAGGTGCCTGTCCTGCGGATCCGTGGCAGACAACCTGCTGTGGTCCTACCTGGAGAGGATTACCTGCCCAAATTCAACCTGCTTTCAGACGTATCTGTGTCTTGCTCGAGCACCGGTTTTGAGTTAAGGGTTAAGAAACGTTTCTACGGTTTCTCGGCCGTGTCGGAGGAGCTGACTCTCGGAGAAACCTGTAGAAGTAACGGCGTGCTCGAGCCGAACAGCGAGCTGCTCTTCACCTACGCGCTCACCGACTGCCAAGGAGAAAAACAGGTATTTCCCGATTATGTGGTTTATAAGTATGTGCTTCGTTATTTGCCCCGGGCCCGACCAGACCGAAACACTCGTCATCGTCTGAGTGTCAAAGTGGGGGTGGAATGCCGATACACCAGAGATGTTTTGAAGCCAACATGGCAGACACCATTGCGGAAAATCATCAGGGGGAGATCTGGTGACGACTTCTCCATTCAGCTGATGGATGACTCCTGGTCATCTCCAGTCAGGTCTGCTGTGTTCATGTTGGGCCAGAAGGTGAATGTTCAACTCTCCACCCGACATCATTACACAGGCGTCAAACTGTTTATCAACAACTGTTATGCGGCCACAGTCAACACTATGAGTCAGACAAACAAATACAACATCATAGACAACTACGGGTGAGTGCAGCAAAACGCTATCTTCAGTGGGCAATTTATCACACACCcagtcttacacacacacacacacacacgcatccaGGTGTTTGCGTGAAAGCCGGATAAGTCCAGGTGCAGCAAGATACCACTTTTCCAGGGAAGACAATGTCGTTCTGTTCT

Function

symbol description
si:ch211-67f13.7 Predicted to enable acrosin binding activity. Predicted to be involved in binding activity of sperm to zona pellucida; egg coat formation; and positive regulation of acrosome reaction. Predicted to be active in extracellular matrix. Orthologous to human ZP3 (zona pellucida glycoprotein 3).

GO:

id name namespace
GO:0035803 egg coat formation biological_process
GO:0007339 binding of sperm to zona pellucida biological_process
GO:2000344 positive regulation of acrosome reaction biological_process
GO:0031012 extracellular matrix cellular_component
GO:0032190 acrosin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-126 Predicted to enable acrosin binding activity. Predicted to be involved in binding activity of sperm to zona pellucida; egg coat formation; and positive regulation of acrosome reaction. Predicted to be active in extracellular matrix. Orthologous to human ZP3 (zona pellucida glycoprotein 3).

Ensembl:

ensembl_id ENSDARG00000077845

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012102 True 1130 mRNA 0.48 4 35955562 35961435

Neighbor

gene id symbol gene type direction distance location
XLOC_006147 mfsd2aa coding upstream 1966 35925490 ~ 35953596 (+)
XLOC_006146 kcnk1b coding upstream 82966 35856463 ~ 35872596 (+)
XLOC_006145 agpat4 coding upstream 167345 35765317 ~ 35788217 (+)
XLOC_006144 gpr75 coding upstream 206886 35745572 ~ 35748676 (+)
XLOC_006143 psme4a coding upstream 210599 35689749 ~ 35744963 (+)
XLOC_006149 NA coding downstream 27720 35989155 ~ 35995167 (+)
XLOC_006150 TTC9 coding downstream 182906 36144341 ~ 36153572 (+)
XLOC_006151 gmfb coding downstream 623964 36585399 ~ 36606941 (+)
XLOC_006152 si:ch211-67f24.7 coding downstream 651924 36613359 ~ 36626092 (+)
XLOC_006153 si:ch211-67f24.7 coding downstream 671920 36633355 ~ 36638969 (+)
XLOC_006140 CU681845.1 non-coding upstream 433386 35483618 ~ 35522176 (+)
XLOC_006135 NA non-coding upstream 970649 34752174 ~ 34984913 (+)
XLOC_006137 CR376850.2 non-coding upstream 985917 34969519 ~ 34969645 (+)
XLOC_006136 CR376850.1 non-coding upstream 1072192 34883246 ~ 34883370 (+)
XLOC_006133 CR524481.1 non-coding upstream 1529197 34426248 ~ 34426365 (+)
XLOC_006160 NA non-coding downstream 1577218 37538653 ~ 37544321 (+)
XLOC_006162 BX005106.1 non-coding downstream 1712743 37674178 ~ 37674294 (+)
XLOC_006163 BX322660.1 non-coding downstream 2189082 38150517 ~ 38150637 (+)
XLOC_006165 NA non-coding downstream 2264641 38226076 ~ 38284199 (+)

Expression


Co-expression Network