AMCG00016132 (LOC102798547)


Basic Information

Item Value
gene id AMCG00016132
gene name LOC102798547
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 8788969 ~ 8809035 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016132
TAAAGGCCAAAGAGTGGGACATCTCCATCCACGTGGGAATTCCTCGCTGTGAGCGGACGTGTGGGGAATTATGCAGGATGCCTGTCACGCTGAAATATCCAAGGGCCATGATGAGATCGAATCAGATCAAAAGCCTTAGTTTTGATGCTACAAACGCACAGCAGCAACGCGGCTCCCAGGCCTCCCAGCTGCCCGGCTCTGTGTTCCCGCCAGCGCCCTGGTCGCGACGCGGGGACGGGCAGCCAATGGCAGCCGCCGATGTAAGCGTGTCCGCTGGGCTGTGTGATCGCAGCCCGAGAGCCGCTCGCCGTTACATATCGGCGCTCATCGGCCCGGCGCAGCGCGGAGGCAGCGCAAACACGGCGCGTCAGCAGCCCGGCGTGTGCAGAGACGACGCCGCAGTAAGCCGGGCGCGCTGCAGCGGTGCTGGCGCGGCCGGAGTCTGCAAAGGCACCCGCGATGGACGTGCTTTGAGCCGCGGTGCTGGCGGGGTCTACAGGGGAGAGCACAGCTTTTGTTTCGGGGTTGTTTTTGCGCACCGGCGGGAGACTGAATGGCGTGAGAGTCGGGCTCAGCCTGTGTCAGGCGCTTCACACGCGGGAGTGAAGCACTGAGGAAGTGTGAGGCCGATCGATGACCGCAGCCAGGGGACGACCATGGAGAAGGAGGCCAGCCAGCTGGAGAGGGACCACGTTCACAGCGTATATGAGAAGATCGCTCCCTACTTCAATGACACCCGCTACAAGGCCTGGCCCAAAGTACGCCAGTTTCTTCTGGATCAAGAGCCTGGCAGCATCATCGCTGACATTGGCTGCGGTAATGGCAAATACCTCCATATCAACAACGAGAGCTTCAAGCTGGGCTGCGACTGCTGCCAGCCTCTGGTGGAAGCGGCACGGAGCCAGGGCCACGAGGTGCAGGTGTGCGATGGCCTGCGGCTGCCCTACCGAGACGGCTGCTTCGACGCCGTCCTCTCCATAGCAGtcatccATCACTTCTCCACCAAAGAACGGCGTATACGGGCAATAAAAGAGATGGCGCGCACACTGAGAGTGGGTGGGAGGTTGATGATCTACGTGTGGGCCATGGAGCAGAAGAGGCGTAAGTTTGAGAAGCAGGACATCTTCGTGCCCTGGAACCCTCACCCACCGTTGTCTGCTGCTACCACGGGGGATCCGGGCACAGACCGGAGGCACGAGCGTCCAAGCACCTTCTCCGGCAACCGCACTGACAACACCGACAAGCACAGGAAGACGAAAAGCACATCCTCCATGGTGGATGAAGAGGAGACGGTCTCCACTCCCCACGAGAAATCCCTAAAGCTCTGGTTCTTCTCCAGGTCGCTGGATTCAGTATTAGACTTTGGGAGCGTCGGCAACTCCAGGTCCGCCAGGGAGCTGAACGCATCATGTGACTATCATCCTCAGGTGAACAAAGCCAATGGGGTCAAGGCGATGAAGCGCAACAGAGGCGTGGGGCTGATGAAGCAGGTCTCCAGCCTGTTCACCTCCAGACAGAGCTCGGAGGAGGACGTCTTCAGCTCTGTGGTGGACCTGCGGccttctgctcctcctcctcctcctccgcctccgcCTGCCAGGGATATGAAGGAGAATTGGGAGAGAAACGGCAGCTCGGCTTCGGAGAAACAGGCCCTCTCTGCCGCGATCGTGCACAGTTGTGGGGCGGTACCCTTGCCCGACCTCGTCTCACACGACAACGTTTCCATCAGCGAGACAGACGTGTGTGACAGCGGCCATGGCGAGAGTCCGCCCCCTGGAGGACAGGAGGGAAAGCACAAAGCAGAGTTCCCCATCTCGCTGAGCAACACCGAGAGCCGCCACGGCGACGAGGAGACAGACAAGCAGAACGACACCAATTCGGTCGATTGCTTCCTGCGGTACTACCACGTTTTCAAGGAGGGGGAGCTGCTGGAGCTCATCGAGAAGCACATCGAGGAGCTGCACGTTCTGCAGACCTACTTCGATCACGCCAACTGGTGTGTCATAGCAGAGAAGGTTCAGGTCTGGAAGATTTAGAATATTTTGGAAGTTCatagtatttttaaacagcctgttttgaatcaaaatgtattttattttgtctccgTAGAACTGaacttttattatgtatttatttattttaatttatattttaggtACATGTGGGAACTCACCACTGATTTTTTTTGACGAACTGGTTCGTTTTAAGGTGTAAAGCATGCATTACTCATTATCCGCTCATTACCAGACTTAGTCCATCCATTCAAATACCTGGCTTTGGAGTGTTCAGGTTGTATCTGTTGCTATGGACCATAGAGTGCAGTACTATAGACTATACATACGTCAGtatatatagtctatatataGGTCCAATTAGCTTATTGGCCTTTCTGGAGGTGATTTGCAAGGAATTTGCAATAATTTGCAGTTGTCTAGATCTGCTGTCTAGACCTGAAAGTCCTCATAATATATGAATTAGTGCACTTTTAAAAGttcttaaatattttcaacTGTTTGTCTTAAGAGTAAATGTATCCGTGGTTTGCAGCTACTTTCAATGGCAGCCAAAGAGTGGGTAATTTCAAATTACTGAAACCGATCTGTTGTGATGTCAAGGGTTTTTGTGTGGTGTGATTAATTTTGTGTATGTAATGTCTGGCTTGTGATCTACTAAAGCACCTAATATTGCACATATTGCTCGACATTGAATAATGTGGGCTAACTATTCAgcaatccattttaaaatgtatgtatatatttgtacaattaGGTCACAGCTATTATTAGACATAGGTATGCCAGAAGTGTGAATTGTCTAACCTGCTGTTATATTGTAGAATATGCTGTGATCAATAGTTTAATATTGTTCAATAGATATTTGACTCCTGGTgagattttaatattgtttgcatGTTAAATTTCATTCCAAAACTTGAATAATTTATTGTTTGTCTTGCCACCTACTGTAAAGGTCGAATTATCATTGAAATTAAGCCATTCCTGTTTTGGTGTTAATAATCAATGTGTGTGCGCCTTTCTATTTCATAATTCTCAGTTAGCTCtgcaaacatttcagaaatactATTTACTATGTTGAGTACACTTTCAGTGGCATGAACATCTAAATAAGGAAGTTGcttctttttaaacttttaaactgttttgtgcAAACTGTTTTTgtacctttattttaatatttgtgttttcagaacctaataaatatatttttgttcttgaaaa

Function

NR:

description
PREDICTED: putative methyltransferase KIAA1456 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016132 True 3242 mRNA 0.50 5 8788969 8809035

Neighbor

gene id symbol gene type direction distance location
AMCG00016128 mab21l1,LOC107730834 coding upstream 264429 8523461 ~ 8524540 (+)
AMCG00016124 LOC108433804,LOC107683036,LOC107752421 coding upstream 462430 8314143 ~ 8326539 (+)
AMCG00016126 dclk1,LOC105909296 coding upstream 554937 8227131 ~ 8234032 (+)
AMCG00016122 NA coding upstream 563835 8206839 ~ 8225134 (+)
AMCG00016123 NA coding upstream 586430 8198874 ~ 8202539 (+)
AMCG00016135 LOC104923292 coding downstream 155171 8964206 ~ 8978905 (+)
AMCG00016140 NA coding downstream 308867 9117902 ~ 9119438 (+)
AMCG00016143 NA coding downstream 428665 9237700 ~ 9286875 (+)
AMCG00016145 NA coding downstream 587567 9396602 ~ 9406042 (+)
AMCG00016156 hmgb1,LOC105901051,LOC103353583 coding downstream 685427 9494462 ~ 9498792 (+)
G11363 NA non-coding upstream 313169 8433588 ~ 8475800 (+)
G11308 NA non-coding upstream 649746 8138715 ~ 8139223 (+)
G11287 NA non-coding upstream 693765 8093800 ~ 8095204 (+)
G11248 NA non-coding upstream 821071 7967594 ~ 7967898 (+)
G11246 NA non-coding upstream 821658 7966988 ~ 7967311 (+)
G11506 NA non-coding downstream 286758 9095793 ~ 9096050 (+)
G11507 NA non-coding downstream 287554 9096589 ~ 9096811 (+)
G11508 NA non-coding downstream 288234 9097269 ~ 9097927 (+)
G11510 NA non-coding downstream 291876 9100911 ~ 9101316 (+)
G11511 NA non-coding downstream 294590 9103625 ~ 9104182 (+)
AMCG00016101 trim3b,LOC108423836,LOC103363426,LOC107701140,LOC107720632 other upstream 1310383 7446450 ~ 7478586 (+)
AMCG00016103 NA other upstream 1486927 7269855 ~ 7302042 (+)
AMCG00016091 NA other upstream 1764118 7022147 ~ 7024851 (+)
G10981 cct8,LOC107693911 other upstream 2123421 6664086 ~ 6665548 (+)
AMCG00016079 NA other upstream 2127301 6641658 ~ 6661668 (+)
AMCG00016136 NA other downstream 259246 9068281 ~ 9089033 (+)
G11509 NA other downstream 290385 9099420 ~ 9100036 (+)
G11545 NA other downstream 414377 9223412 ~ 9226245 (+)
AMCG00016159 ubl3,LOC107578048,LOC106604009 other downstream 750429 9559464 ~ 9591649 (+)
G11660 NA other downstream 789780 9598815 ~ 9599156 (+)

Expression


Co-expression Network