AMCG00016134


Basic Information

Item Value
gene id AMCG00016134
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 8823545 ~ 8827760 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016134
ATGCGTTTAGTTTTAAAGGTTAAAGAGGGCTCCGGTGGTCTTCCAGTTGTTCATCACAGTAAATATGCTTGCGATCTACCGCCAAATCACAGATTTCCAATGGAGAAGTTTTCAAAGGTTATGCACTTCCTCCTTAAAGATCAAATTATATCAGAAAAACAGGTGTGGACCCCTCAGTGGGTGTCCAAAGGTGTGCTTAGCAGTGTGCACACTGAGGACTACCTGGAGAGCTTGCTGAATGGAAAGACCAGCCCAGAGGAGCAGAGGAGAACAGGATTCCTCTGGAGTGAAGGGATAGTGAGCCGCTGCCGCTATGAGACAGGTGGCACAGTTCTAGCTGCCAACATTGCACTGCAAAGAGGTCTTGCATGCAGTACAGCTGGAGGAACTCACCATGCTTTCCCCAGCTACGGAGCCGGATTCTGTCTGCTTAACGACCTGGCCGTGACTGCAAAACAGTGCATGGACAGCTCTGGAGCCAAAAGGAAGGTCCTTATCATCGACTTGGATGTACATCAGGGAGACGGCACTGCTTATATCTTCAGGGAGGAGTCGCGCGTCTTCACGTTCTCCATCCACTGCGGGAAAAACTTCCCCGTGCGGAAACAGCAGAGCGATCTGGACGTCAGCGTGGACGAGGCCATGGGAGACGAGGATTACATCGCGACAGTTGAGACCCACCTCCCTTGGGTGCTGGACAGTTTCCGTCCCGACTTGGTGTTGTATGATGCCGGCGTTGACCCCCATAGAGACGATGAACTAGGGAGGCTCCGGATGACAGATGAAGGTCTTTATCAGAGAGACATGTGTGTTATTGACATGGTTGTTGGAAAAGGGATTCCTTTGGCCACCGTGATTGGTGGAGGCTATTCGAGAGACATTAATCTGCTGGGTCTCAGGCATACTTTAGTCCACAGAGCTGCTGCCAAGgtGTGGGAAAGACATGGATTGTGAATACAAAGTGCAATCATTTTTGTTCCAAGCAATAAAGtctcattgtattttaaagaaaaa
>TU14153
GTTTGCCAGTGCTCCGCTACAAAGTAGAAAGTAAGGCAACTGATGCCAATGACATTGAGTTCCTACCTTAGCAAACATGGCGCTCGGCAGTTTAGCGTTGTAGTGTCCTTTCCTGGGACTGGGTTATTCGCGTCTATCTGAGGAGCAACATCTAAAAGGATAGGAGCTTttactaaaaatacacacatgttgctgcatttatttccattagATACAACAGCAGTACGTGGTGCAGACGTCATGATACGGTGATGTCTTGTTTCTCACCAGCCGATGCTgctgtacagacacacatacgCTTAACCAATTCAAACAATGAACATTATAAGTGCAAAGCCGAATGCATTGTGTGGAAATGCGTTTAGTTTTAAAGGTACGTTTTTGAGGAAAGGTGTCCAGCATGACTGCTGGAAGAGATGCTTGCAGACTGAAGTTAAAGAGGGCTCCGGTGGTCTTCCAGTTGTTCATCACAGTAAATATGCTTGCGATCTACCGCCAAATCACAGATTTCCAATGGAGAAGTTTTCAAAGGTTATGCACTTCCTCCTTAAAGATCAAATTATATCAGAAAAACAGGT

Function

GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03420 Nucleotide excision repair
ko04110 Cell cycle
ko04111 Cell cycle - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016134 True 1014 mRNA 0.50 8 8823545 8827405
TU14153 False 578 lncRNA 0.43 2 8826681 8827760

Neighbor

gene id symbol gene type direction distance location
AMCG00016133 rfc3,LOC107589808,LOC107728889,LOC107577751 coding downstream 2837 8810847 ~ 8820708 (-)
AMCG00016131 nbeaa coding downstream 152367 8657202 ~ 8671178 (-)
AMCG00016130 nbeaa,nbea,LOC107691681,LOC107588988 coding downstream 179197 8594090 ~ 8644348 (-)
AMCG00016129 LOC106612894,LOC102298628,LOC102206684,LOC101482631 coding downstream 328962 8435120 ~ 8494583 (-)
AMCG00016127 NA coding downstream 390360 8416250 ~ 8433185 (-)
AMCG00016137 NA coding upstream 153320 8981080 ~ 8990420 (-)
AMCG00016138 pds5b,LOC107683122,LOC107730842,LOC107587120 coding upstream 174342 9002102 ~ 9027841 (-)
AMCG00016139 NA coding upstream 223300 9051060 ~ 9055579 (-)
AMCG00016141 NA coding upstream 261409 9089169 ~ 9110807 (-)
AMCG00016142 NA coding upstream 283517 9111277 ~ 9116154 (-)
G11346 NA non-coding downstream 491742 8326182 ~ 8331803 (-)
G11345 NA non-coding downstream 502503 8320697 ~ 8321042 (-)
G11314 NA non-coding downstream 649571 8173689 ~ 8173974 (-)
G11309 NA non-coding downstream 684875 8136414 ~ 8138670 (-)
G11300 NA non-coding downstream 698162 8124990 ~ 8125383 (-)
G11482 NA non-coding upstream 228144 9055904 ~ 9059100 (-)
G11571 NA non-coding upstream 486240 9314000 ~ 9314447 (-)
G11633 hmgb1,LOC105901051,LOC103353583 non-coding upstream 608042 9435802 ~ 9498753 (-)
G11650 NA non-coding upstream 715748 9543508 ~ 9543743 (-)
G11658 NA non-coding upstream 761975 9589735 ~ 9594953 (-)
G11326 NA other downstream 629113 8191546 ~ 8194432 (-)
AMCG00016119 NA other downstream 699512 8119221 ~ 8124033 (-)
AMCG00016110 ufm1,LOC107701138 other downstream 1070108 7680911 ~ 7753437 (-)
AMCG00016074 NA other downstream 3893645 4903856 ~ 4929900 (-)
AMCG00016049 NA other downstream 4903042 3886298 ~ 3920503 (-)
AMCG00016176 NA other upstream 2006652 10834412 ~ 10847811 (-)
AMCG00016194 NA other upstream 2938392 11766152 ~ 11781547 (-)
AMCG00016203 zdhhc20,LOC108438268,LOC106578454,LOC108256609 other upstream 3004668 11832428 ~ 11947322 (-)
AMCG00016211 NA other upstream 3495401 12323161 ~ 12329033 (-)
AMCG00016226 NA other upstream 4022118 12849878 ~ 12870560 (-)

Expression


Co-expression Network