AMCG00016136


Basic Information

Item Value
gene id AMCG00016136
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 9068281 ~ 9089033 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016136
ATGCCGTTTTGGGGACATGGAGCCTGCAGTTACCTCACCCAGAAGGGCTACCCCACCTTCACAGCTGCAGCCCAGGAGGACTTAGTGACAGAAGTGTTCCTCCGTGGCCTGACCCCCGAGTCCCAGCATCACCATGTGTGTCTGAGTGCACCTGCCTCTCTGGAGCAGGCCTTAAAGCAGACGAAGGACAGGAGTCCCAGGGCTTGTCCATGGCCTACACGACAGCTGGAAATTGCCAAAGTGGCAGCTGGGGATGCCGTCCAAGTGCGACCATCAACCCCGCTGATGCTGGCGCTGTGGATAAGCGGGACTCTTCTGCTCTGCTGGCACTCCAAGCCCTATCCTACAGGGAAACAGGAGGGGGATCCAGCTTTAGAAAGAGGCTACAGAGTTGAGTTCCACGAACCAGACACCAGCTGGAAGTCTGATCCTTCAGAGTTAGAAAAgaGGAACAAGCACAAGGTGCCCCAGGAGAAGATTGCTCAGATGCTGGAGAGATTTGAACAGCCCATGACTCTAGACATAGTTCTGAACTCGCAGGAGCCCTCCCACAAAGCCTCAGCAAGGCCCCCCGCGCGCCACAGACAGAGAAATGGGGGGATAAAACTGAAGTCCAAACAGAGGAGAAACGCAAGACATAGAGGACTCCAGAGAGCTAAAGCGGAGGACAATAAAGGCACTGAGAACCACAGAGATGAGGTGTGTCTTGGAGGAGCCCAGGACCATGGAATTTCACCAACGGGTGACAGCACTGCTGCTCCCTTAGAGAGCAATGGCACATGGCATGAGAAGTCCAATGGAAGATCCTCAACTCCAAGGAAACTGAGGCGACCCTACAACTTGGCTCCCACGTTTGATTTTGCACAGCAGAGAGAAACTAGCTGTGGAGGggacacaaagaaagaaatcgCCTTTCCTGAAGACCAAAATGAGGGGACTGAATCACAGAGGTCCATGCCCGGAGTCTCTGTAAGAAAGGTGATTGAAGATGAGAGGAAGAAGACCTGTGGAGGAGCAAAAGACACGGCTGCCAGAAACTGGGGTTCTGTCAGTGTCGTGCCTATGGCTGAAGACCCCATAGAGGCATGCATGGGGTCTCCCACAGGACACAAGCAGTGCTGTACACCAGCCAAGGAACATGCTCCTTTTAAAGACATGTTGGAATTTGTGGAGCCTAGCGCTCAGACTCTCGCAGAGGAACAAAGCGGTTCTGAAAGAGATTTGCTGGAAGTCGGAGAACACCAGAGGAACAGCATCGCCTACGGACGATTCCCTTGCCTTCGTCTGTCCCTGGGGCTCGCTTTGCAGCTGGAGGAGCTGTTTGGACCCATCGGTTTGGAGTTTGGAACTGTGGTTGGCAATGAAGATGAGAGCAGCTGTGCAGAGATCGGAGGATTGGCATTTCAGCatacagagagaaaagacaAAACCCGCAAACACCCGTCCACAGTTTCCTCCACTGAGTAA
>TU14218
TGACTATCATTTCTANNTGCTCGGTGCTGATTAAACTTCTGTATTACAGACCACTATAATAAACCAGCTTTCAGAAGATAGTATATTTTCCCCATCATGGATTTCCAACCCATTCTCCTTCTTGCAGGCTTTAGAAAGAGGCTACAGAGTTGAGTTCCACGAACCAGACACCAGCTGGAAGTCTGATCCTTCAGAGTTAGAAAAgaGGAACAAGCACAAGGTGCCCCAGGAGAAGATTGCTCAGATGCTGGAGAGATTTGAACAGCCCATGACTCTAGACATAGTTCTGAACTCGCAGGAGCCCTCCCACAAAGCCTCAGCAAGGCCCCCCGCGCGCCACAGACAGAGGTGGGGTGGCCCTGGCAGCCCTGAGGCATATCCCgtcacacaaacagaaaccGAACACAATGAAAAACCTTGTTAGGGCTAAGATGCATCGCTCTAATCAGGGGCTTCTCCTATTCATTTGTGTTCATCCTTGGTTTGCTATACCCGGCAAAAAATGTTCATCCtttttggggtggggtgggggctgGAAAACAGGAAATCACATATTAGAATCTTTTAATTACCAGTTAATTAGTCCTAGCAAGGTGATTGTATCTctgcaatataaatgtattttttcccctaatAGGTTATAAATCAACTGCAAGCAATATGTACTAACTGGAAGGCTGCGAGACCCAGTTAAACTTTGTATTCCTCTTCTTCAATCAAAAGCCACTGACAGTAGGGTAATTAGACAGAGATCTATTTAACAAACCACTGTCCCAGACCGTGAGCCCAAACCTTTTGAGACGTGGCATCTCCTGTGTCTTTACAGACGCACTGTGACGAACAAAACAACCACCGATATGATATTGATCACTCGGACAAATGTGATGGATCAAACTAGTCAATGAAtgttattacatgtatttagttTCAGAAGATTTTGCATTACTAAACCATTTTTTATCAccttaaattgtgttaaaatcagtgtgtgtgcatagaGCTCCAtgcaatttttgtttttctcatgttGTCGATATGTAAGGCAGTGATAACGTGTTTTATGTCTTGGGCAGCTGTCCATTGAGTAGTGAACATTTGAAGTctatattctgtgttttttaaatgaagtgctTAGTCCTGGGGACTGGCatattgttgttctgttttaactttctaaatttaaacatttcaggaatttattttctttaactcAGGATAATCAACTTCTCTGGTGCTTTCATCCTTGCTGGTGTCTGCTTGTCTGAGCTGCAGCAAATAAGATCATATATTTCAGGTGTAATACATTTGGCTTTATGTATTAGTTTTATTGCAAATTTGACTCTACTCCTACTTATTATATTCTGCATTTATGACTCTTTCTCCACTCTCTGTCCTTAAGAAACACTCATCCATGCCTAATTTTCACTTGGTTGATATAATTTGACAATGTCAGTTGGACTGTTAGCAGTTACCTCCTCTGTTGCACTCAATCTCAAATTATGCCTACGCTGTAGAACGGCAGTGCAAGAAGAAGCCCCCAGGTGGGGAGGATTTAGCAGCTGTCCCGCAGAGAATCTGTCACGTGGCCTCTTAGAGTAGATGGAGTTGGAGGCCATTACACATATTGCCCACAGCCTCCCCCCGTGTTTTGCCATGCTGAAGTGCCACCAGCCTGGGCACTTTAGAACTGCATTGATGTATCCCTGTGGAGGTCTGTTTTCACTTCAAGTTCCCTGATCCCTTAATCACTGCTTCTATGTATACCTTGCTTCTCTTTGGCCGTATTGAAGTTGGTTTCAACCTGAGAAGAGACATTCTGGCTAAAGCATGGACTACATTTTGAAGAACTGAACACATTGCTATtcacatataatacaaataccAGTGCTCTGTCATGAAGTGCATGATGCAACAAGTGTGTGAATTTGCCAGGGTGTGGGGGATTTTCACATGattatgattttgattttattttcagacagCAGTGcatatagattttgttttttaacagcggttccttttttaaaattcaatgtttaataatgctttttaaaactcTGGAGTGGATTACAATTTACACTTTACAAATTCCTTTGGATGGCATAATGGATGTTGTGTTCCTCTCATGATTTTGTATTACCTTTGGTTCGTAATGATAGTAATTCAGtgtcattttatatattgttttgctcTTGATTTAGATTAGCACTCTGTATTACTCAATCAGAGAGGCTTTgggaagttaaaaacaaatggtttcATATTTAATCTCTCACAGGGGTAAATATAATGGGGTGATTGTaggaattttaaaaaaattacctTTAAGTGACATACATGATGTAGCACCAGCACTGTACACTGGACTGAAGAAGAATTTAGAAATCAAGCAAAAACTTGAGAATCGAGACACATTGAAATACGctaaatcta
>TU14219
ACAACTTTACAACAGAAAGCCAAACCTTATCATCATGAGGGGTCTTCCAGGGTCAAGGAGAACAGGTCGAGCTAAaaaaataataagtgcCTATGGCCGAGGAGTGATCTGCAGCACGAATGACTACTACAGAGATAAAAATGGAGAAATGAATTACAGACATGAGTTAAAGGATATTGCACATCGATGGAATCAAGAGAAAGCTGAAGAAGCCATGCAATGTGGAGAAGATCCAGTTATCATTAATAATACCAATGTGCGGCTTTGGGAAATGAAGCCATATGTTATAAAGGCTCTTCAATATAGTTATTGGGTCACTTTCATAGAACCTGATAAAGAGTGGCATTGGGATATCGATAAACTGGCAAGAAACACCAAGGACAAAGTGCCAAGGGTAGTAATAGAAAGAATGTATGATNNNNNNNNNNAATGCCATCATATCTATGATGTACTACGCTCATAGTAGCCTTGGAGAAATTGAAGTTCGATCAGCTTCCTCAAGCTTTCCCAGCGACTTCAGACATCAAAGAGTTCACCCATTTAAANNNNNNNNNNAAAACTTTGAAAAAGACATAACTGTTATTGTTTCTATATGGGTTTTTTTCTAAAAActatttgcttttttaaaaaagattttaaaagattaaaaagattaaatatttgcaaGTTTGCTATTTTTAgttccctgtttttattttgtataactgAGAGAAAAGAGGTGTGTTTTGTCTACATCCAGCACTTGAATTCAGCTTCATAGAAATTAAAGATATTGTGCTGACTAAAGTTGTATTATTCATCCTAGACTGACCTGTTAGTGTCAGGGTTGCTGTGTAGCTCCTGATTTATATTGCTTTCATATTGCATCCCATACATAACTAAAACTACATGGCccaagtattttattgtttcaaatttgtaactttgatttaatacatgTAATCTTTGCTTTGATTTCCATCGCTTCCTCAACTTTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016136 False 1467 mRNA 0.53 7 9073086 9089033
TU14218 True 2433 lncRNA 0.40 3 9080946 9084621
TU14219 False 978 TUCP 0.46 5 9068281 9072022

Neighbor

gene id symbol gene type direction distance location
AMCG00016135 LOC104923292 coding upstream 89376 8964206 ~ 8978905 (+)
AMCG00016132 LOC102798547 coding upstream 259246 8788969 ~ 8809035 (+)
AMCG00016128 mab21l1,LOC107730834 coding upstream 543741 8523461 ~ 8524540 (+)
AMCG00016124 LOC108433804,LOC107683036,LOC107752421 coding upstream 741742 8314143 ~ 8326539 (+)
AMCG00016126 dclk1,LOC105909296 coding upstream 834249 8227131 ~ 8234032 (+)
AMCG00016140 NA coding downstream 28869 9117902 ~ 9119438 (+)
AMCG00016143 NA coding downstream 148667 9237700 ~ 9286875 (+)
AMCG00016145 NA coding downstream 307569 9396602 ~ 9406042 (+)
AMCG00016156 hmgb1,LOC105901051,LOC103353583 coding downstream 405429 9494462 ~ 9498792 (+)
AMCG00016157 katnal1,LOC107578067,LOC107697436,LOC107741157 coding downstream 420991 9510024 ~ 9521955 (+)
G11363 NA non-coding upstream 592481 8433588 ~ 8475800 (+)
G11308 NA non-coding upstream 929058 8138715 ~ 8139223 (+)
G11287 NA non-coding upstream 973077 8093800 ~ 8095204 (+)
G11248 NA non-coding upstream 1100383 7967594 ~ 7967898 (+)
G11246 NA non-coding upstream 1100970 7966988 ~ 7967311 (+)
G11506 NA non-coding downstream 6760 9095793 ~ 9096050 (+)
G11507 NA non-coding downstream 7556 9096589 ~ 9096811 (+)
G11508 NA non-coding downstream 8236 9097269 ~ 9097927 (+)
G11510 NA non-coding downstream 11878 9100911 ~ 9101316 (+)
G11511 NA non-coding downstream 14592 9103625 ~ 9104182 (+)
AMCG00016101 trim3b,LOC108423836,LOC103363426,LOC107701140,LOC107720632 other upstream 1589695 7446450 ~ 7478586 (+)
AMCG00016103 NA other upstream 1766239 7269855 ~ 7302042 (+)
AMCG00016091 NA other upstream 2043430 7022147 ~ 7024851 (+)
G10981 cct8,LOC107693911 other upstream 2402733 6664086 ~ 6665548 (+)
AMCG00016079 NA other upstream 2406613 6641658 ~ 6661668 (+)
G11509 NA other downstream 10387 9099420 ~ 9100036 (+)
G11545 NA other downstream 134379 9223412 ~ 9226245 (+)
AMCG00016159 ubl3,LOC107578048,LOC106604009 other downstream 470431 9559464 ~ 9591649 (+)
G11660 NA other downstream 509782 9598815 ~ 9599156 (+)
AMCG00016174 NA other downstream 1755094 10844127 ~ 10958032 (+)

Expression


Co-expression Network