AMCG00016139


Basic Information

Item Value
gene id AMCG00016139
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 9051060 ~ 9055579 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016139
GTGTAATCACTGGGAAACCGAAACTTAAAACGATCCTCCCACTGTGTTGTTTTGCGGCTGCAACAGTAACTGCTGTCCAGAGAAGCAATGGCTGATAATATTGTCCACGCTTTGCAAAATATAAGTTTGCACCGCAGTGGCAGACGGAGACGTCGGCGCCGCAGACCCAGGGAGCTGTACATCCTAAGGGGTCTTCCAGGATCAGGGAAGTCGGTTTTGGCGAGGTAAATGCGACAATAAAGTGCAGTAACTCGGGATCTGAGTGATCTTTTGGCAGCTATAGATTTAAAAGtgtgaatataaaaatgtaaaaagctaCATGCAGTGTCTTCTAAGTCTGGACGAAAGCTGAGCTGCAATGTCCCGGAGAGATGCCAGCGTCAGGTGCGTTTGGTATGAATCTGTTTATCTGGgtggaaaaatgtaaatgtagtcTATACATGCCCACATTAAGTTGTATAAATACTTTATACACAAAATATGGAGTTTTTGATGTATCATATTAATAAGCCTATaagttaaatatatgttttggtcTTAACAACATGCGTAAAGGCTAATTTAGCTACAATGTTTGTTGTCCAGAGGTAGCCAggaaaatacatgcatgcatacgaCATAGTGTCTCAGACAGTAGTGTTAGGGAGATTTTACAATGCTTTACTGGTGTTTAGGAAATCTTCTCTAAAGTCTTTAATATACTCatcaacaaatgtatatatgtcGCACAGGTtcttttatgtttgtgtaaCTTGTGTTTGCTGCCTTATTGGCCAGGGCTCACTTGTAAAAGAGATGTAAACCCCAATGTGACTTCTCTACAGGAGAAACACATAAACATACTATATCCTCTTCTTCCCGGTATTGATCTATTGCTTTTATCttttgtatcatttaaaaacgATTTCCCCATTTTCGACTGCACATGTGTGGGTTATGAAAGCTGTTAAGAAATCTGGGGGGAGGATTAGCAAACCAGACGCAAAGAAGCGACTGTTTCATGGCTGCACTGAGAGAAGACAGATCTCTTCTCTCCCTTTGTAATTTCTTTTTGTTAACAGGATTAATCCGAGTCCGTAGTAGATTTCATGTGTAAAGTAAGTTGGCCTATTTAAACATTATTCCCTGAAAACTGTATTCCCATGTACTGATGCAATGTGGTGCAAACACAATGTTACCACTGTGAAGGTGCCACCCGCTATTATATTGCCTTTTTAACTGAAGTTTCATGCATCTGTGTATGAATACAGTACACGAATACAAGCTATAGCCACCGTTGTCATATCATTGTTTCATTTCATGGCCAATGCAAACTGAAAACCAAAGCAACATGTTTTCGGGTGTCAACAATCAAAAACTTTGTTCAATGAGAATATGTTGCCAGTGTATGCATCCATTCTGTTCCATTTTCTTCTGcaggcaaataaaaaataattatggcCAGGCAGAGATTTTCAGCACTGATGACTATTTCAGAGATGAAAATGGACACTATAGATTTAAGGCCTCCTTACTGAAAAGAGCCCACAAATGGAATCAAATGAGAGCGAGGGAAGCCATGGAAGACGGAGAAAGCCCGATTATCATTGATAACACAAACATCCATCTGTGGGAAATGAAGCCTTATGTTGAAATGGTGAGGATGACTACATCAACATCCACGCCGACTGCGGGCTGCAACAAGCCGCGGCTCTCCCAGGCGGCGCTGCTGGCGGCTGTGCGGGGCGGGCTGGCGCTGCCTCCCGCGGCCGCTAGGTGGCGCCGCGTCTCCGTGGCTGCCTGCGCACGGCGGCTGGATTGGCGCAGCCAGAGACAAATTGGCGCCATTTTGAAGCCAAGAGGAGGATCAGAGCTGCAGAAGGGGAGACGATTGGCTGCTATTCATCAAACT

Function

GO: NA

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway
ko05164 Influenza A
ko05162 Measles

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016139 True 1891 mRNA 0.43 3 9051060 9055579

Neighbor

gene id symbol gene type direction distance location
AMCG00016138 pds5b,LOC107683122,LOC107730842,LOC107587120 coding downstream 23219 9002102 ~ 9027841 (-)
AMCG00016137 NA coding downstream 60640 8981080 ~ 8990420 (-)
AMCG00016133 rfc3,LOC107589808,LOC107728889,LOC107577751 coding downstream 230352 8810847 ~ 8820708 (-)
AMCG00016131 nbeaa coding downstream 379882 8657202 ~ 8671178 (-)
AMCG00016130 nbeaa,nbea,LOC107691681,LOC107588988 coding downstream 406712 8594090 ~ 8644348 (-)
AMCG00016141 NA coding upstream 33590 9089169 ~ 9110807 (-)
AMCG00016142 NA coding upstream 55698 9111277 ~ 9116154 (-)
AMCG00016144 NA coding upstream 63989 9119568 ~ 9183910 (-)
AMCG00016148 rxfp2,LOC106591039 coding upstream 211622 9267201 ~ 9289324 (-)
AMCG00016151 NA coding upstream 278114 9333693 ~ 9358730 (-)
G11346 NA non-coding downstream 719257 8326182 ~ 8331803 (-)
G11345 NA non-coding downstream 730018 8320697 ~ 8321042 (-)
G11314 NA non-coding downstream 877086 8173689 ~ 8173974 (-)
G11309 NA non-coding downstream 912390 8136414 ~ 8138670 (-)
G11300 NA non-coding downstream 925677 8124990 ~ 8125383 (-)
G11482 NA non-coding upstream 325 9055904 ~ 9059100 (-)
G11571 NA non-coding upstream 258421 9314000 ~ 9314447 (-)
G11633 hmgb1,LOC105901051,LOC103353583 non-coding upstream 380223 9435802 ~ 9498753 (-)
G11650 NA non-coding upstream 487929 9543508 ~ 9543743 (-)
G11658 NA non-coding upstream 534156 9589735 ~ 9594953 (-)
AMCG00016134 NA other downstream 223300 8823545 ~ 8827760 (-)
G11326 NA other downstream 856628 8191546 ~ 8194432 (-)
AMCG00016119 NA other downstream 927027 8119221 ~ 8124033 (-)
AMCG00016110 ufm1,LOC107701138 other downstream 1297623 7680911 ~ 7753437 (-)
AMCG00016074 NA other downstream 4121160 4903856 ~ 4929900 (-)
AMCG00016176 NA other upstream 1778833 10834412 ~ 10847811 (-)
AMCG00016194 NA other upstream 2710573 11766152 ~ 11781547 (-)
AMCG00016203 zdhhc20,LOC108438268,LOC106578454,LOC108256609 other upstream 2776849 11832428 ~ 11947322 (-)
AMCG00016211 NA other upstream 3267582 12323161 ~ 12329033 (-)
AMCG00016226 NA other upstream 3794299 12849878 ~ 12870560 (-)

Expression


Co-expression Network