AMCG00016145


Basic Information

Item Value
gene id AMCG00016145
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 9396602 ~ 9406042 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016145
CGGCGCGGTGGAAAGCTCCAGAACGCAGACAGCGTTACACCCGGCGGGCGGGCGGCCGTCCGCGCTGTGGGCATGGAGACGCTTCTGGAAAGTTCTCCGGCTGCGAGATATAAACGGTCCGGGGGCAGCAGCGCCGGCCCCAGCGATAGCGGAGTGGCAGCGAGCCGGTGCTGTAAAGGAAACGGTAGAAGAGCAGGATATACAGTCCGCGGAGGTGATCCAGTGGAGTGGAGACCGAGATGTCGGTGGTGGGGTTTGATGTCGGATTTCAGAACTGCTACATCGCGGTGGCCAGGGCCGGGGGGATAGAAACGGTGGCCAATGAATTCACTGACAGATGCACCCCGGCTATTGTGTCCTTTGGCTCCAAAAATAGAGCTGTTGGTAATGCAGGTAAAAATCAGCTTATAACCAATGCTAAGAACACAGTTTCCAATTTCAAGAGGTTGCATGGCAGATCATTTGATGATCCTGTTGTCCAAAGTGAGAAAGGCAACTTACCATATGGCTTGGCTTCAATGCAAGATGGCAGAGTGGGTGCAAAGGTGATGTATCTTGATGAGGAGCACCACTTCACAGTAGAGCAAGTAACAGCCATGCTCCTGACTAAACTGAAGGAGACTGCTGAGAACAACCTGCAGAAGACCGTAACAGACTGTGTCATCTCCGTGCTGGCCACGGCCTTCGATCCTTACTTGGGTGGGAGGAATTTCGATCAAAGACTGGTGGATTTTTTCAGTGCGGAATTCAAGACCAAATACAGGATGGATGTGAAGTCCAAGGTCCGAGCCCTACTGAGGCTCCAGCAGGAGTGCGAGAAGCTGAAGAAGCTGATGAGCAGCAACTCCACAGACATCCCTCTAAATATCGAGTGCTTCATGGACGACAGGGATGTGTCTGGAAAAATGAACAGGGCTCAGTTCGAGGAACTTTGTGGCGATCTCATAGAGAGAGTAGTGGCTCCTCTGAAAGCAGTTGTTGAGCAAGCCCAGCTTCAGCTTCAGGATATCAGTGCTATAGAGATCGTAGGTGGAGCAACCCGGATCCCGGCAGTCAAGGAAAAGATCATGAAGTTCTTTGGAAAAGACGTCAGCACCACGCTCAATGCTGATGAAGCCGTGGCAAAGGGCTGTGCCCTGCAGTGTGCCATACTTTCACCAGTGTTTAAAGTGAGGGAGTTCTCCATCACAGACACGATCCCTTTCTCAGTCTCCCTCTCCTGGAGCACAGAAGTGGATGAACCCACAGAGAAGCAAGAAATATTTTGCAAGAATCATGTCTGTCCCTTCTCCAAAGTGATCACTTTCTATAGAAAAGGTCATTTTGTGCTGGAAACCTTTTACACAGACCCACATTTGCTGCCCTGTCCTGAATCAAATATAGGTCAGTTTACTGTGCAGAACATCTCCCCACAGGCTGATGGGGAGAAGGTCAAAGTGAAGGTTAAAGTGCGCGTGAACGCACACGGGATTGTGAGTGTGTCCTCTGCATCGATGGTTCAGAGAGTTCAAGTTGAGGACAATGAGGCTATGTTTATGGATGATTTGCAAGAGAATGCCAATACTCAAGAAAGTACAGAGATCATGAACACAGAAAATGAGATGCAAGACAAAAGTGAGGGCGAAACACAGCCCCACATACAGATAGACAAACAAGAAGCACAACAGTCTCCCCCTTCACCTGACACTCGTGATGAGTGTCAAAGCGATGTTAACCCTCAGAAACTGAATGGAGAACTCCCAACACACCACCCCCCTGATGCCAAGAAGCCCAAGATAAAGGTGAAACATGTGGAACTGCCCATTGAGGCTAAGCTAGTGTGGCACCTGGGAGAGGATCAGCTGAACACATACATTGAACAAGAGGGTAAGATGGTAATGCAGGACCAGCTAGAGAGGGAACGAAGCAATGCAAAAAATGCAGTGGAGGaatatgtgtattatttcaGGCACAAACTTGCTGGACCCTACGAAACCTTTGTAAACGAAGAGGAACGAATCCAAATCACAGAGCTTCTGGACCAGACCGAAAACTGGCTGTATGATGAAGGGGAGGACCAGCCCAAACAAGTGTACATTGACAAGATGCAAGAACTTCAAAAACATGGCCTGCCTGTAGAAGAAAGATACCAGGAAGCTGAGATGAGGGACAAGCTGTTTGCAGAGGTGACCTccaaagtgcaaaattacatgAAGATAACAGAAGATTACGGGAATGGGGATGAGAAGTACATTCACATTGATGTGCCTGACATGGAGAAAGTCACAAAATGTGTCCAGGAGACGATGGAGTGGGTGAACAATGCAAGGATGGCCCAGGACAAACTGCGACCTCATCAAGAGCCAGTGGTGCGCGTGGCCCAGATCAGAGCCAAACTTCAGGAGTTGGATAGTACCTGCGAGCCTGTTGTTTCAAAGCCGAAACCCAGAGTGGAGTCCCCCGTTGAGGACAACATGCAGACTGAAGACAACCCCAGCAGCAAGACAAAAGCCCAAGCACTTGAAAAGGATGTTATCACCCCAGAGGAAATTCAACAAAATGGGGAAAATGGATCCACAAATATGGATCTCAATTagaataaagtttttttttttttttttttacttggatGTAAAGTCTTACAATTAGTAAAGATGAATAGCCTGACAGcagggggggttgggggggcttGCTTTGATTgaacttactttttttttggacTGAAGGCTATTTCAAAACAGGAGTACTTTCTGTTGCACTATAGGAAGCCTTGCAATTTACCAGTCTCTTTGCTATATAGTGATCTGTTATTACATTACTTTGTAGTCCAgtgaaaagcagttttgtttctttgtggttAGGTTTTCTTTTGATAATCAAGTTGCAAGATTATACCTTCTGACTCAAATATAGGTGTTTTCAAAGGGAAGCCAGAACTCagaatgtgtatataaaatTCCTGTGGAATTATAAATGCCAATTGTCATTAGGTGCCGCATGAAGAAAGCAATCTGTAATTTGCTCAAGTAAGTGTCTCTAAAGCCTTGCACAAATGCTCATAATGGCATGTTGGGTTTTTTCTATGTTTCTCACTCCATTTCCAAATAAACTTGTTGGCTTACATTTTTATCCGATAAATCTGTTAAGACTGCTAAGACTCATTACAACTTTCCAAAGAATGGATGGTGATCGCTCTGGCAGGAAACATTGTATCACCCGTTACAATAGACTGCACAGTTCAAATACCCTTAAAAAATCAAACTATTTTGTCATCCCACCCCATTATACTTTAAGGACCTTATTTTAAACTGAACAGTTTTCTGCTTTGGTTTAATTATTGTGGAAATTAAAAGTACTCAATACAAATA

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0017001 antibiotic catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016145 True 3347 mRNA 0.46 16 9396602 9406042

Neighbor

gene id symbol gene type direction distance location
AMCG00016143 NA coding upstream 109727 9237700 ~ 9286875 (+)
AMCG00016140 NA coding upstream 277164 9117902 ~ 9119438 (+)
AMCG00016135 LOC104923292 coding upstream 417697 8964206 ~ 8978905 (+)
AMCG00016132 LOC102798547 coding upstream 587567 8788969 ~ 8809035 (+)
AMCG00016128 mab21l1,LOC107730834 coding upstream 872062 8523461 ~ 8524540 (+)
AMCG00016156 hmgb1,LOC105901051,LOC103353583 coding downstream 88420 9494462 ~ 9498792 (+)
AMCG00016157 katnal1,LOC107578067,LOC107697436,LOC107741157 coding downstream 103982 9510024 ~ 9521955 (+)
AMCG00016158 NA coding downstream 126060 9532102 ~ 9550216 (+)
AMCG00016160 NA coding downstream 251548 9657590 ~ 9658570 (+)
AMCG00016163 NA coding downstream 318547 9724589 ~ 9741418 (+)
G11572 NA non-coding upstream 62743 9330891 ~ 9333859 (+)
G11570 NA non-coding upstream 82168 9313998 ~ 9314434 (+)
G11511 NA non-coding upstream 292420 9103625 ~ 9104182 (+)
G11510 NA non-coding upstream 295286 9100911 ~ 9101316 (+)
G11508 NA non-coding upstream 298675 9097269 ~ 9097927 (+)
G11672 NA non-coding downstream 557922 9963964 ~ 9964237 (+)
G11674 NA non-coding downstream 562500 9968542 ~ 9968783 (+)
G11678 NA non-coding downstream 602997 10009039 ~ 10009385 (+)
G11681 NA non-coding downstream 691656 10097698 ~ 10098122 (+)
G11684 NA non-coding downstream 729886 10135928 ~ 10136190 (+)
G11545 NA other upstream 170357 9223412 ~ 9226245 (+)
G11509 NA other upstream 296566 9099420 ~ 9100036 (+)
AMCG00016136 NA other upstream 307569 9068281 ~ 9089033 (+)
AMCG00016101 trim3b,LOC108423836,LOC103363426,LOC107701140,LOC107720632 other upstream 1918016 7446450 ~ 7478586 (+)
AMCG00016103 NA other upstream 2094560 7269855 ~ 7302042 (+)
AMCG00016159 ubl3,LOC107578048,LOC106604009 other downstream 153422 9559464 ~ 9591649 (+)
G11660 NA other downstream 192773 9598815 ~ 9599156 (+)
AMCG00016174 NA other downstream 1438085 10844127 ~ 10958032 (+)
G11921 NA other downstream 2462783 11868825 ~ 11871735 (+)
AMCG00016202 NA other downstream 2586930 11992972 ~ 12005952 (+)

Expression


Co-expression Network