AMCG00016148 (rxfp2,LOC106591039)


Basic Information

Item Value
gene id AMCG00016148
gene name rxfp2,LOC106591039
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 9267201 ~ 9289324 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016148
ttttggttcctcTAGTTACAATGGAGGGGAGCATCCCAGGTATTGCTGACTGCCCAATGGGACATTTCCCCTGTGGGAATCTTACAGTGTGTTTACCTCAGCTCTTGCACTGCAATGGTGTGGAAGACTGTGATAATGGCGCTGATGAAGAGAACTGTGgAGATAACAGTGGGTGGGCTGACTTTTTCGACCGTGCAGTCGGAAAACCATACCGCCAAAGCTTTCCCAAGGATtgttttcTACAGCAATACCCTGATTTTTGTGAATGCATCGAGACAGAACTAGAATGTGTGCAAGTCAACCTGAACACCGTACCTCTGGTTTCAACTAATGTGACTTTATTATCCCTGAAGAACAATGAAATAAGAAAGCTTCCTGATGCTGTTTTTTCAAAGTACTCTGAACTTCAGAAACTattCCTTCAAAATAACAGCATCCGAACAGTGTCAAGTAGAGCTTTCAGTGGACTtcacaaactgaaaaaactGTCTCTCAGTCAAAACTGTATCACATCATTGAAGCCTGGTGTTTTTAGTGATCTTCATCAATTACAATGGCTAATCCTTGATGATAACCCACTCAAGAGGATTTCAGCACAAATGTTTACAGGGTTaaagtccttgttttttttgtaagtacAATGCAGGAGGCCCACGTTTTCAAATGAACTTCCCTGGCTTTTACTCATCCAGTGAGGGGTGGTGGTGTGTATCGATGTCTTGCGATGAGCTTTCATCCAGTAGTGGCCAGTCAGAGCTTGGCAATTATGTTCTATAATTGTACTTTTGAATACGGCATTGGGGGCAGGGGGGGACCTTTTGAATCTATGTGTCTATTGCTACTGTCATTCTAGCATCTAGCAATGATGATTGCTGATGCATGATTCTGTATGAGGGGCTGTTCAATTAAcacataacaaattaaatgtattatataccaaagtggatatatcatatagcagaacaTATGTATTAGGAACCAAAGTGGATATAACTTacagcacaaaaaataaagttatttgcAATGTGTTAAATAAACTTTGTTATATGAGTTTGGCTATATTTTCTGCTATGCGATATATCCACTGTGTATATGATTTATAGGTTTTGGCATATGATACATCTACTTTggtacataaaacatttaatttgttatttttgaagtgAACGGCCCCCCATAATTCtaattgttttcacagcacAAGCCATCATTGTtcctttatattatattatcttTAAGCAGTTCAAAACCATAACCGTTCTGCATGAGCCAAGTTCCAACGCATCCTCATAATCTTGGTCCTGATCCCTGACACTTTCCCGGCACAATCAGTTTACCGCACCATTCTGAAAGTCGTAATGTTTCGcaatcaaaattaaacattaaaatgcccGTAGGAAATCTTCAACTGGGACACTGAAAAGTTTGTGAGACATTGTACGActtcatgttcttatgttctttcaaggagaagaaaaacaaaaaagcaaatgcacatttttttaaaaatttttttttttatgaataaggCACAAACTGACTGCAGTTacttttataatgttttcacaaatatgtatttccttaTCCCCCATCATCATCGTGTTCCTTCTTCGATGTCATTTCACGCCAGATTGTAAGATTTGTAGGTACATTCTTGATAGTTCTGATTGTTCCATGTGGTGATGTTATCCTCCCATTGGCATCTGGGTAATCCTCTACTCCTTTTACCTTCAGTTTTACCTTCTAAGAGGCATCGTTGGAAGTTGCTCCTTCTTGTTAAATAGCTGTTCTTGCACGTCTTGATATTTATTAGTAGTGGCTAGTTTTCATCAAATCTAATACCTTTTCGTTTTGACAATTTTCTGGTCCAGGAAATTTTGTGCATCATTTGTCCAGGTTTTGCTTAAGTAGTTTAGTGTGGAGTGTCCATAGCAATGAAGTATTCTTCATCTGCTTGTGATCGTCAATATCTTTGAAGTCAAGGTGTCATACATGTTGTGAAATGCGCTTTGTCCTATTCTTCCCTcaatttctttcacattttccGTCATCAGATTTACATCTCTTTATGTCTAAATATCTTTCTACTATTGTTTTTAGGTTCAGGATGACTTTTCCCCTCACGAAACCACTCTGAGTTTCCCTTATTTCAGCCTCTATTGTTGGTCCTCATCCCAGTGTCTTAAAAAAGTCCTGCACCATGATCAGTTTTCAGAACTAGAACAACTTTTAACTCCAATTTATTATACCTGCAAtctgttttctttggtttttatttttaagaaaattacCTCCTCCcctcaaaattaaattaaattaaaaaatctaagGTTTGTTCTCCACATTGGATCTGTAttggttttcattaatttcttccttttgtttctgttatttgtacATCAAATACAAGATCATTTGTCACTTTCtgattctttccttttttgcctttttctgGCATTTTTTGTGGCAGTTTGGTGTGATATTTTCTTGTGCCCACTTGTCTCGTTTCATCCCTTTGTCTGGTTTTCCTCTCATCAGGCTGTCACGCTGGTTTCTCCAATTTTTGGCGAGGTAATTCCCGCATGTGATATTTTTCACAGCTGTACAATTCATCACAGACAACCGTGTAGAGGGGGAAATGAGAACATTTTGTGCAGGGCCACAATTGTCTTAATTATTCCAGAACAAACCTAACATCAGCTGTAGCTTTGTTACCCCATCTCTAAGGACTTCTGAGACTTTGGTTTGCATTAATTAGGCTTAAGAgctccattttaaaacatgtaaacaatgaCATTTACTTACTCTACTGAGATGCATAACTATTTAGTTTCATACGAGCTCCACTTaacaaagttaatttatttgtttaccgTCAGTATTTGCAGCTGCAATTACAGGTCAATGACAACACAGTTGTTCTCAGTTTTAGAAGTGAAATTGTAAACGCTTTGAATGCtctgatttgtgtttgtattttgtagatTGCTATTGCACTGATATGGTGGCTTAAGACATGGAAGTTGGGATGCTGTGTGTCATCAGCAGGAATTGTTGTTAAGGATAATACAAGCTTGGCCATCTGGTTGAGTATGAGAGCATAAACTGTTAGTTATTGCTTAGTCTGTTCCGACTGTTTTATAAACTCTGTTTTATAATGAGGCAAAATCCACTAGCACTGATGCTTCTAACAGACACTtagcttgtttaaatgttttaatgtgggTTTATGTTATTCACAATTGGAGGTTTTTGCAGATTTATGACTGACTGgagttttcattgctttttcaGGTCAATGGTTAATGACTCTTTGGAGCAGCTTCCAAAGGCAAAACTGTGCTCTGAGATGCTGCTTCTGAACTGGGTGGACTTCGAAGGGAACAATATCAGGGCGTTAAATTTCTCCACCCTACTGACGTGCAGTGACCTCACTGTTCTAGGACTGGAGGGAATAGAAATCCCAAATATACAAACCAGGATGTTCAAGCCCGTCAGGAACCTTTCGCATATATATTTTAAGAAGTTTCAATACTGCTCCTATGCTCCTCATGTACGGAAGTGCAAGCCCAATTCCGACGGGATTTCTTCCTTCGAGGACCTGCTGGCCAACATTATCCTCCGAGTGTCAGTGTGGGTCATTGCTTTCATCACTTGCTTCGGCAATGTCTTTGTTATCTGCATGAGGTCCCTGATCCGAGCGGAGAACAACCTGCATGCCATGAGCATCAAGGTGCTGTGCTGTGCTGACTGCTTGATGGGAGTGTACCTCTTCTTCGTGGGGGTGTTTGATGTGAAGTTCCGGggtgaatacaataaaaacgcACAGCTCTGGATGGAGAGCATGCAGTGTCGCACCATAGGCTTCTTGGCTATGCTCTCTTCAGAGGTGTCAGTGATGCTGCTGACCTACCTCACCCTGGAGAAGTACCTTGTCATTGTTTTCCCGTTCAAGAACATTCGCCCGAGCAAATGTCAGACTCTGGTAATGCTGGCGACCATATGGCTGCTCGGATTTTTCATTGCCGCCATCCCGCTGTTGAATGAGGATCTGTTTGGGAACTATTATGGCCGAAATGGGGTCTGCTTTCCTCTCCATTCAGATCGTCTGGAAAAACCAGCTGCAAAGGGGTATTCAACAGGAATATTCCTGGGGCTGAATCTGGTAGCCTTCCTCATCATAGTCTTTGCCTACACAAGCATGTTCTGCTCCATCTATAAGACCGGCCTGAACACCACGGACATGAGGAGTCGCCTCCACAAAGACGTTGCTGTGGCCAACCGGTTCTTTTTCATTGTGTTCTCTGATGCCCTCTGCTGGATACCCATTTTCCTCGTGAAAATCCTCTCTCTGCTGGAGATGGAGATTCCAGGGACCATAACTTCCTGGGTGGTGATCTTCATTCTACCCATCAACAGTGCCTTGAACCCCATCCTCTACACTCTCACCACCCGCTTCTTCAGGGAGCAAGTGGAGCTTTTACTGTGCAGGTGGCAAAGAAACTCCGGCCACGAGAAGGGCCGAAAGAGTCTGACCACTTCAGTGGCATTCATGGACTCCTCCAGACAGACCTGCTACCACCAGAGTTTCCTGCAGAGGATATCTATCAGGGAGATGTGATGAAAGGGGATAACAGGAAGTGAAGCAACAAGAAAGAGCAATACTTTCAGCCATTTGGCTAATTCTGTTCAGAGGGTCTTCATTCCCATCATGCCACTGGATTACCAAGGCAACGAGCCTAGTCTGTTAAGGGCTTTTTCTCCATTGGACTCAGGAGCAGCCAATAATGAAGACCTTTGCCATACAGTAACGGTCCTCTccactacagggagacagggcgTCAGTGCACTATATGTGTATAAAGTGTCTGAACAGGTTCGATTTCAGCATAGCTGGGACTCCTCGACACCAAGCACAGTATTGTTTACAGGAGCAGTTCTCCATGCAATGGACTGAATGTgactttattgtttattgtacagTCGGAGAAAGCCTAAATCCACGAGTGGGGCACACTTCattgaatggaaataaaaaaaaaaaacgttttaattGCCAAAACCAAATTTGTGGAGAAGCtaattttccttccttggacagaAAGAATATGTAAGATTTGGTTGTTACTGTGAATGATGTTTATACCATAATTTcattatctatttaaaaaaaatcctcacCAGCAAAATGGCTACTTATGTCAACATTCCACTCAAGTCCAGTGAAATCATGTGATTCTGATCTTTTAATCCTTTAGAAAATGCTAAACACATAGgttattataattgtgt

Function

symbol description
rxfp2 Predicted to enable G protein-coupled peptide receptor activity. Predicted to be involved in activation of adenylate cyclase activity; adenylate cyclase-activating G protein-coupled receptor signaling pathway; and hormone-mediated signaling pathway. Predicted to act upstream of or within male gonad development. Predicted to be part of plasma membrane. Predicted to be integral component of plasma membrane. Implicated in cryptorchidism.

NR:

description
PREDICTED: relaxin receptor 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016148 True 5292 mRNA 0.41 13 9267201 9289324

Neighbor

gene id symbol gene type direction distance location
AMCG00016144 NA coding downstream 83291 9119568 ~ 9183910 (-)
AMCG00016142 NA coding downstream 151047 9111277 ~ 9116154 (-)
AMCG00016141 NA coding downstream 156394 9089169 ~ 9110807 (-)
AMCG00016139 NA coding downstream 211622 9051060 ~ 9055579 (-)
AMCG00016138 pds5b,LOC107683122,LOC107730842,LOC107587120 coding downstream 239360 9002102 ~ 9027841 (-)
AMCG00016151 NA coding upstream 44369 9333693 ~ 9358730 (-)
AMCG00016152 NA coding upstream 116978 9406302 ~ 9410567 (-)
AMCG00016155 NA coding upstream 127198 9416522 ~ 9416725 (-)
AMCG00016154 NA coding upstream 130805 9420129 ~ 9427244 (-)
AMCG00016149 NA coding upstream 143306 9432630 ~ 9441739 (-)
G11482 NA non-coding downstream 208101 9055904 ~ 9059100 (-)
G11346 NA non-coding downstream 935398 8326182 ~ 8331803 (-)
G11345 NA non-coding downstream 946159 8320697 ~ 8321042 (-)
G11314 NA non-coding downstream 1093227 8173689 ~ 8173974 (-)
G11309 NA non-coding downstream 1128531 8136414 ~ 8138670 (-)
G11571 NA non-coding upstream 24676 9314000 ~ 9314447 (-)
G11633 hmgb1,LOC105901051,LOC103353583 non-coding upstream 146478 9435802 ~ 9498753 (-)
G11650 NA non-coding upstream 254184 9543508 ~ 9543743 (-)
G11658 NA non-coding upstream 300411 9589735 ~ 9594953 (-)
G11662 NA non-coding upstream 406449 9695773 ~ 9696054 (-)
AMCG00016134 NA other downstream 439441 8823545 ~ 8827760 (-)
G11326 NA other downstream 1072769 8191546 ~ 8194432 (-)
AMCG00016119 NA other downstream 1143168 8119221 ~ 8124033 (-)
AMCG00016110 ufm1,LOC107701138 other downstream 1513764 7680911 ~ 7753437 (-)
AMCG00016074 NA other downstream 4337301 4903856 ~ 4929900 (-)
AMCG00016176 NA other upstream 1545088 10834412 ~ 10847811 (-)
AMCG00016194 NA other upstream 2476828 11766152 ~ 11781547 (-)
AMCG00016203 zdhhc20,LOC108438268,LOC106578454,LOC108256609 other upstream 2543104 11832428 ~ 11947322 (-)
AMCG00016211 NA other upstream 3033837 12323161 ~ 12329033 (-)
AMCG00016226 NA other upstream 3560554 12849878 ~ 12870560 (-)

Expression


Co-expression Network