AMCG00016157 (katnal1,LOC107578067,LOC107697436,LOC107741157)


Basic Information

Item Value
gene id AMCG00016157
gene name katnal1,LOC107578067,LOC107697436,LOC107741157
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 9510024 ~ 9521955 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016157
TGCGGCCATGGTAACATCGCTGTGTAACGGACTGCGgcacaaacagacagaaataagCGGTTCCTGCTGAGgTATTATACAGGGTGACTGAATAATTAACAGTATTTGAAGTGGAACTGGAACATGTTTTGATGAAGACAATAAGACCAGTGGATACATGTCTGCAAGTTCGTGGAGACCATTTCCAACATTTACTGTAAGCTGAACAAGattcaCAGAGCAATATGAATTTGCCAGAGATTTGTGACAATGCTAAGAAAGCTAGAGAATATGCTCTACTGGGGAATTATGACTCTTCTATGGTGTACTACCAGGGAGTGATTCAGCAGATCCACAAACACTGCCAGTCCCTGCGAGATCCGGCCCTCAAGGTCAAATGGCAGCAGGTGCGACAAGAGTTAGTGGAAGAGTATGAACAAGTGAAGAGCATCATGAACGCACTGGAGAGCTTTAAGATCGACAGACCTGTAGACTTCCCGACCCCACAGCCAGAGGAATCCCCACGGGACCCTGTGGTGTGGCCTCCCCCAACTCCCGCAGAGCACAGAGCTCCCAGCCAGGTGAAGCGTCCCAATAGAGAAGTGAAGCCACTGAGGAAAGACTCCCCTGTGGTCCAGCACCGGGGGCCTGTGGGCCGGGCCCAGCCAATAGCCAAGGGAGACAAGCCCAGCACCAGAGAGAACAAGGACTATAGGACTAAAGCCAAGGATGACAAGGGTAAGAAGAACCCCCTGGATGGCGCAGGGGAAGGGGAGCTGAAGAAGTTCGATGGCACCGGGTATGACAAAGACCTAGTCGACGCGCTAGAAAGGGACATCGTGTCCAGGAATCCCAACGTGCACTGGGATGATATAGCTGATCTGGAGGATGCCAAAAAGCTGCTGAGAGAAGCTGTGGTGCTGCCCATGTGGATGCCAGATTTCTTCAAGGGCATTCGAAGGCCTTGGAAGGGAGTACTTATGGTTGGCCCACCAGGTACTGGCAAGACAATGCTAGCCAAGGCTGTAGCCACTGAGTGTGGAACGACATTTTTCAACGTGTCCTCTTCAACACTCACATCTAAATACAGGGGAGAGTCGGAGAAACTGGTCCGGCTCCTGTTCGAAATGGCCCGATTTTATGCACCCACAACAATCTTCATTGATGAGATCGACTCCATCTGCAGTCGCAGGGGTACGTCTGATGAGCACGAAGCCAGCCGCAGAGTGAAATCTGAGCTGCTCGTACAGATGGATGgGGTTGGAGGGGCATTAGAAAATGACGATCCTTCAAAAATGGTAATGGTATTAGCTGCGACCAACTTCCCCTGGGACATTGATGAGGCACTGAGAAGAAGATTAGAGAAGAGAATATACATTGCATTGCCCACAGCGATAGGCAGAGCTGAGCTGTTGAAGATCAATTTACGAGAGGTGGATTTGGCCCCCGATGTTGACCTTGCCCTCATTGCGGAGAAGATTCAGGGATATTCCGGGGCTGACATCACAAACGTCTGCAGGGATGCGTCCATGATGGCCATGAGGCGGCGTATCCAGGGTCTGAGCCCGGAGGAGATCCGCGCGCTGTCCAGAGATGAACTGCAGATGCCAGTGACCATGGAGGACTTCGAACTGACCCTGAAGAAAATCTCCAAGTCCGTCTCCGCCGCGGACCTAGAGAAGTACGAATCCTGGATGGCGGAGTTCGGGTCGGTGTAGGAGAGAGCTGTGGAGACGGTGTGCTCCTGTGTGCTCCTGTGGGAAAGGGAGTACGTCTGTGGTGTGTCCATTACCTGCGGTCTTGGAGTGCCCTGAACAACATAAACAACTCACTCCAGCCTCACCCAGATGTATCGTCTCTTCTTTAATGTTTACTTGAAAGGGAACCACTTTTTTATGTACTGTAACATACTaacttttttaaaagcatctttttgttgtgttttaaatgatgaaaataaGAGAACAGTGAGCAGGTACTGGTTGTCAGTTAGGGCAGAGGCTCCCAAACTGGGGTCTGCGGAACACTAGGGGTCCGTGAGGGAGTGCTAAGGGGTCCACggccaaccccccccacccaccgtattattttaaaatgcggTCTGAAACTGTCAGTCAACCCCTCGCTTTCGCATGTTGTTGCGTTCGCCCCCCGCTCTCACACGTTTTTACcatcagcccccccaccccttctcaCACTTGTTTACCGTCCTGTCCCCCCGTTCTCAATATTTTTTACTGGCCCCCCTCCCCGCTCTCACACATTAGTACCGTCACCCCTCCCGTTCTCAAGCGTTTCCCTGAGTTAGGGAACTATTGACAGGTATTGTTGGTGTAGTGTGAATGTGGTTAAATTTCTCATATGTTTTGAACTCTATTCAGAACATCTTTCTCTTGAAGGACACGTAACACACAATGCTAATTATGTTTTCAGtctgttatgttttaatttgtattttaatttgcctcaccttttcaaatgttttaccCAAATATAGCTTGTTTTCTTATAAACGgaaggcaaataaaataaaatacaatattaattgtGTATTGTTTCCATCCTAAAtgctatatttgtatatagacAGGAAAATATCACAGTAAATAACTTGCATGTGCTATTAGACAGTTCTTCAAGACTAAAGCTATGAAAATAATCAGGCAAACTGTTTCTTAGTTCTCTTTTTGTCATAAATGGTCATTTCTCACTGTCAGCTAATTactaaatgttctgtttttgtgtattgATGCTGGTCAATCTGCAGGACATGTTTCACtggattcaaaataaa

Function

symbol description
katnal1 Predicted to enable ATP hydrolysis activity and microtubule-severing ATPase activity. Predicted to be involved in cytoplasmic microtubule organization and microtubule severing. Predicted to act upstream of or within cell division. Predicted to be located in cytoplasm; microtubule; and spindle pole. Predicted to be active in microtubule cytoskeleton and nucleus. Is expressed in nervous system and yolk syncytial layer. Orthologous to human KATNAL1 (katanin catalytic subunit A1 like 1).

NR:

description
PREDICTED: katanin p60 ATPase-containing subunit A-like 1

GO:

id name namespace
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0008568 microtubule-severing ATPase activity molecular_function

KEGG:

id description
K07767 KATNA1; katanin p60 ATPase-containing subunit A1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016157 True 2773 mRNA 0.48 12 9510024 9521955

Neighbor

gene id symbol gene type direction distance location
AMCG00016156 hmgb1,LOC105901051,LOC103353583 coding upstream 11232 9494462 ~ 9498792 (+)
AMCG00016145 NA coding upstream 103982 9396602 ~ 9406042 (+)
AMCG00016143 NA coding upstream 223149 9237700 ~ 9286875 (+)
AMCG00016140 NA coding upstream 390586 9117902 ~ 9119438 (+)
AMCG00016135 LOC104923292 coding upstream 531119 8964206 ~ 8978905 (+)
AMCG00016158 NA coding downstream 10147 9532102 ~ 9550216 (+)
AMCG00016160 NA coding downstream 135635 9657590 ~ 9658570 (+)
AMCG00016163 NA coding downstream 202634 9724589 ~ 9741418 (+)
AMCG00016168 NA coding downstream 269359 9791314 ~ 9797697 (+)
AMCG00016170 NA coding downstream 290860 9812815 ~ 9813758 (+)
G11572 NA non-coding upstream 176165 9330891 ~ 9333859 (+)
G11570 NA non-coding upstream 195590 9313998 ~ 9314434 (+)
G11511 NA non-coding upstream 405842 9103625 ~ 9104182 (+)
G11510 NA non-coding upstream 408708 9100911 ~ 9101316 (+)
G11508 NA non-coding upstream 412097 9097269 ~ 9097927 (+)
G11672 NA non-coding downstream 442009 9963964 ~ 9964237 (+)
G11674 NA non-coding downstream 446587 9968542 ~ 9968783 (+)
G11678 NA non-coding downstream 487084 10009039 ~ 10009385 (+)
G11681 NA non-coding downstream 575743 10097698 ~ 10098122 (+)
G11684 NA non-coding downstream 613973 10135928 ~ 10136190 (+)
G11545 NA other upstream 283779 9223412 ~ 9226245 (+)
G11509 NA other upstream 409988 9099420 ~ 9100036 (+)
AMCG00016136 NA other upstream 420991 9068281 ~ 9089033 (+)
AMCG00016101 trim3b,LOC108423836,LOC103363426,LOC107701140,LOC107720632 other upstream 2031438 7446450 ~ 7478586 (+)
AMCG00016103 NA other upstream 2207982 7269855 ~ 7302042 (+)
AMCG00016159 ubl3,LOC107578048,LOC106604009 other downstream 37509 9559464 ~ 9591649 (+)
G11660 NA other downstream 76860 9598815 ~ 9599156 (+)
AMCG00016174 NA other downstream 1322172 10844127 ~ 10958032 (+)
G11921 NA other downstream 2346870 11868825 ~ 11871735 (+)
AMCG00016202 NA other downstream 2471017 11992972 ~ 12005952 (+)

Expression


Co-expression Network