AMCG00016158


Basic Information

Item Value
gene id AMCG00016158
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 9532102 ~ 9550216 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016158
ACTTCAAGTGAAGTCCCCTCACCAGGCCCGGGTATTTCACAAATCCGGAGTAAGCTCTTTAAACAGCTGGCTTTCTCGAAGCCGGTGTATTCTTTTGAACTCGAGGAAGACACAGTTCCAGGAACAACACTGGGGTATGTGGAAGCATCCCACGCTTTGCAAGACAGGCAGATCTCTTACTCCCTGGTGGAGGACGATGGCGATGGCCTGTTCTTGCTGAACCCAGTCTCTGGAGAGGTCACTCTGTCACGAGCCTTGGATTATGAGTCAGAGCAGACTTACATCCTCACGTTGGGAGCTGGATATGGGGAGGCCCAGTTTGCTTGGGTCAGAGTTTATGTCAATGTTCTGGATGTCAATGACAATCCACCTGTCTTCAGCTTTGATGCCTACACTGTTTCAGTGCTTGAAGATATCCCAGTGGGGACTTGTATCTTCGGCCTCAATGTCACAGATGCTGATGATGgtgTGAACGCAGAACTGAACTCGGCAATAATCTCGGGGGATAACGAGGGGAGGTTTGCAGTGGGCTCAAATGGTATAATCTGCCTTCAGAGAGCTttagacagagaaacagagtctATATATAGTTTGACAATCCAGGTCAGTGACTGTGCTCTGCCTGAAGACACACGACTCACCAGCACCGCTCATATTACAGTATACATAGAAGATGTGAATGACAACGCCCCGTTCTTTACATCGGGTGAAAAGGTTCACGTTCCAGAGAACATGCCGGTCCATTCTGTAGTAACGGTGGTGCACGCTTTAGATGTGGATGCAGGGGCCAACAGTGCTGTTGAATATGTTCTCGAACACATGTCAGGGAACACTTTCAGGATTGATAGCTCAAGTGGTAGGGTCTACCTGCAGAAAGAGCTAGATAGAGAGCAAACCAGTATGTTGACGGTTCTACTCACAGTCCGAGACAAAGGGTCTCCCCAGCTTTCGTCTTCCATGAACCTTTCTGTGTTTATCGATGACGTCAATGATAATGCCCCGATTTTCACCCAGAGCTCTTACAAAGTCACAGTCATGGAAGACGTCCCCAGAGGCTTACCTCTATGTCAGGTTTTTGCTTCCGATGCCGATGGAGGCCCAAATGGACAGATTCGATATTCCATTTACCAGAGTCAGTTTGTCATTGATTCCCTGAGTGGAGACATATCTGTGATGGGCAGTTTGGACCGTGAAAAGCACCCATCTTACACTCTTACTGTCATTGCAATGGACCAAGGAGATGTTCCTAGGTCTGCAACAGCTACTGTCCATGTCCTCCTCACTGACGTCAATGACTTCGTGCCTACGTTCTCCCCGTCGCTGGTGACCGTGCACGTATCAGCTATAGATGAAGATCTTGGTGTCAACAGTCAGCTTACATATACCATTACGAGAGGAAATGAAGATGAACTTTTCGCCCTCTCTCCCACTGGCACGCTGAGTGTGTGGCACAGCCTGGACAGAGAATTGAAGGCTCACTATACTTTGGAGGTCATCGCAGTAGATTCAGgtcTTCCTTCCTTAACTGGCACTGGAACAGTACTGATAATAGTTGATGACCTGAATGACAACAGGCcattgtttcttaaaaatatctTCTCGGTTGCTGTGAATGAAGATGCTCGTGTAGGAACATCATGCACCACAATTAATGCCTCTGACCTTGATGAAGGTGTTAACGGGCAAATAAGATACTCTTTGCAAGATACAAGTTCATCCTTCTCCATTGATCAGTCATCTGGTGTCATCTTTACTACTGCTGTGTTAGACAGGGAGGCAGTGGGCAAATACACCTTGAAAGTAATAGGGACTGACATGAACACAACCCATCCACTCTCCAGCTCTGCCATAGTCTCAGTAGAGGTACAGGATGTGAATGATCAATGGCCTCAGTTTTTGAATGGCCCATATGTTGCAAATGTTCCAGACACCATAACCTCTGGTTCAATTGTCTGTGCTGTGAGAGCAGTTGACTTGGATACTGGGATAAATGCACAGCTCACCTTTTCGTTGTTTGGATCTAATTCGGACCAGTTCACTATTGACCCGATCAGAGGGGTTATTTTTGCTGCTCACACCACCACCGCGCCGAAAGACATGACACTCAGTGTCCGCGTGCGAGACGGTGGGAAGGAGCCGAAGACGGACACCACAACTGTGACTGTGAGATTCCAGAGTGCATCACAAATCCCACGGGTGGCAGCCGCTTCTCATGAGCACCTGCTTTCTGAGGACGTCGCCTTAAACACACAAATTACCGTGGTGACTGCAGAAAGTGAAAGAAGGGGCCTGGTGGGACCCATCTCATACTACCTCGCAGCCGGCAACTTTGAGGAAGCATTTCAGGTGCATCAGCAGACAGGAATACTGACCGTAAATAACCCACTAGATTATGAGACCAACTCTGAATTCCAGATATGGGTTGAAGCCCGAGATGCTGGCTTGCCACCTTATTCTTCATACATTAAAATTCACATAAGCATCAGTGATGTGAACGATAACGCTCCAGTGTTCACCCGCAGCTCATACAGGTGTGAGGTGTTTGAGAACATGCCAGCCAGCCTGGTGTGTCAGGTGTTAGCTGTTGATTTGGATCGAGGATTTAATGGGGAGGTGCAGTACAGTATCTTAACTGGAGACACGGAGAACACCTTTACGGTAGATGCGGACACTGGGGTCATAAGGACGAGGAAAAGTATCGATCGTGAGAAAACGTGGGTTTACAACCTAACGGTTCAAGCCAGAGACAAAGGGAACAGATTCCACACGGGCACCACACTGGTGGTTGTGACTGTGCTCGACACAAATGACAATGCACCTCGTTTCTCCCAGATCTTTTTCACTGAGATCCCTGAAAACACTCCTGTTGGATTTACAGTCATCCAGATCACATCGACGGACGCAGACATTGGTGTAAATGCTGTTAGCACGTATATGATTGTTAACACGAGTGGTAGCGTTCCTTTCGCCATAGATAATTCCAATGGATATGTAACTGTCATTCGGCCTTTAGACAGAGAGATTAAAGACCGCTATGTTGTCAGAGTCAATGCCAACGATTCTGCGTGGAGTGTGAACACAGAAGTCACTATATACATTACTGACATTAATGATAACAGACCTGTTTTTTCTCAGTTGTCATATTCTATCACCATCCCTGAGACCAAAGCTCGAGAAGTATTCATACTGCAAGTTAATGCCAGGGATTCTGACCTTGGGCAAAACGGACAAGTTTTCTACTATATTCAACCACCCAGTgacctgtttaaaataaatgcatcaaccGGGGATGTGCTAACAAAACAGCCCATTTCTCTCCATGAAGTTGGAACTCAAAACCATAGCTTTTTGGTAGTTGCCTCCGACTGTGGTGTTATGCCGAATCTTAGTAACGTTACTGTGAGGGTGAACTTTGTGCAGTACAATTATTTCCCACCAATGTTTCTTCCCTTTCAACCTCTCATCTCCGTGCCATTCAACTTAGATGTTGGAACCAAAGTGATGCAGTTATCAGCCATAGATAAGGATTCAGGAGATTTCAATGGTACTGTAGAATATTTTGTCACAGGGGGAAATGCTTCTCGTTTCTTTAAAGTTGAACAAAATAGTGGATCAGTATTTGTAAATACATCATTAAAGCAAATCTTCAAAGAAATGGCAACACTCCTAGTTACAGCAAAAGACAAGGGTGTTCCACCTCTTTCAACTCACACCTCTGTCAGTTTCctaataacagaaaataatcacTTTGCTCCACATTTTTCAGCGACACAAGTTACATTTGTAGTGCGTGAAGACCTGCCGGTGGGGTCGGTTATTGGGAAAGTCAAGGCTGAAGACAAAGATCCAGGACCCAATGGAATTTTACACTACTCTATTATTGAAGCAGAAAATGAggagaaaatattttcaattggGCAGAGTACAGGTTTTGTAACATTAATTGCCAGTTTGGACTTCGATAAACAAAAAGTTCACAGTCTTCAGGTCACTGCCAAGGATGATGGATGGATATCTAAAACTGGAAACCTTAATGTCATTGTAGAAGTGCAGGATGTGAATGATAACCCCCCTATCTTTTCTGCCACAGAGTATCTTGTGTCATTGCCTGAGAACTTACCTATTGGCACTACAGTCCTCCAGGTAAAAGCCACTGATATGGATTCAGGGGTAAACTCACAGATAAGTTACTCGCTTCTGAAAGGGGATGTTGATGGGTTTGCTTTGGATTCTCAGAATGGTGTTCTTACCACTCAAGaagtttttgattttgaattgcaACAGAACTATGAAGTAACTGTCAAAGCTTCCAACACAGACAGTCAGGGTCACTTCAGCTTAGCACAAGTTCATATATTAATCACAGACGTTAACGAATACAGGCCTAGATTCAGTAGAAGCCAGTACCACTTCACCGTTTCCGAGAGGGCTCTGGTTGGAACCAAAGTTGGACACGTTTTTGCCAGTGACTCGGATTTGGGTGTGGATGGAGAGGTGTTTTATTTGCTGATTGGCCAAAGTAAGAAGGCGGGATTTGATATTGACAAACGTAGTGGTGACATATTTGTCACAGGTGATTTAAAACAGCATGCCCAGAATCAGGCTGTGTTAAGAATCCTTGCTAAGAACAAGGGTAGCATTACTGGAACTGATGTTGAGGAAACACTTGTTCTTGTCAGTGTAATGGATGCCAATGATCCTCCgacattttcttcttcagtgtACCATGTGGACATCAGCGAAGGTACAGCAGTGGGAACATCAGTCGTTAAAGTGAAGGCCGAAGACCAAGATTTCCACTCCAATTGGAATAATTTCTCCTACAGCATCGAAAGTGGAAATCACAACGGCTCCTTCTCTGTTCATCCAGTTACCggatttatttccattgtgaCTCCGCTAGATAGAGAACAATGGGCCTTTTACAATCTGACAGTCACTGCAATTGATGGTGCACCGATTGCGGGCACAGGGAGCACAAAGGTACTGATTGTGGTGAGTGACATAAATGATAATGCCCCTATCTTAAGCTCTGTGGAAGGTCATGTGAGAGAAAACGAGCCCCATGGTACCATTGTTACCATCATGAATGCTACAGATGCTGATCTTCCTCCAAACCAGGGGCCTTTCACCTACCAGCTCGGCCAATCTGAGGCATCCAGCTATTTCACACTGACATCAGATGGAGTGCTTTCCACCATAAGACCACTAGATCGTGAGGAACACAGAGTCTTCCCCGTGATTGTGGTAATCCAGGATGCTGGGATTCCCCCTCAGTCGGCCACAGCAACAGTTCACATCACAGTGCTGGATGAAAATGACAACCCGCCGATGGTGAGAAACATGTACATTGAAGTCAAGTATTATGGTAGCTCTTTCTCAGGAGGTCTTATTGGGAATGTCAGACCAGAAGACCCCGATGTATCGGATGAGTTTAACTGCAGCCTCAGAATTGGTCCAAGAAACCTATTCAGCTTCCCATCCAACGGGTGTGATCTGTGGTCCTCTCCATATCAGGGAGAGGCTAAATTCAATCTAACCATAGCAGCCAGTGATAACCGCCACATACCTGTCAACAGTAGTGTCTATGTCAATTACAAAGGCTTCACCAATGCCACTATTGATAACTGCATCCTCTTTTATGTCACTTCACCGCAATTTGAGGTGTTCTTGTCTATAAACTATTTGAAGCTTATAAAAGCCTTGGATAGTCTCTTCAATTTACAGGCCTCTAAAATCCATGTGTTTGGAATGAAGCCTTTAGGAAATACAACTCTTCTACTGGCAGCCGTTAAGAATTACAATGGACAGTATATCAGTGGCACAGTGGCGAGTGGCATCTTTACAGATCAGAAAGAACATCTGGAGGCCCAAAGCAACATCAAAATCTCCCTCATCACCAGTGACCCTTGTTTCTCGAACCCTTGCCATCACCAAGGGACTTGCAATAAAAATGTTGATATAAGCCAAGATATTTCCATTCTGGAAAGCTCTACAGTAATATTTGTTTCCCCAAAGCATGTGGAGATATTTAACTGTTCCTGCCTGCCAGGCTACACAGGACTACTGTGCGAGCTGGACATCGATGAGTGTAATGGAGGTCCGTGTGATAATGGGGCTGCTTGTGTGAATTATCCTGGCGGGTTTTCCTGTAACTGCACATCTGGCTACTCGGGACCATTTTGTTCTTCCGATATCAAtgaatgcaaaaacatttcctGTCACAATGGTGGGACCTGTTTAAATATACGAGGGGGCTTTTACTGTGACTGCAATCTCGGTTATGTGGGTCAATTATGTGAGCACTTAGTGGACCACTGTGCATCATCTTCTTGTCTGCAGGGAACCTGTGTAAATTCACCAACTGGATATACTTGTTCTTGCCCATTTGGTGTGAGTGGCACTAACTGTGAAGAATACAGCTACGGCTTTGAAGAGCTATCCTATATGGAGTTCCCGCCTTTAGATTCCCAGAATAATGTTCTCTCTTTGGAGCTTGCCACAGTGCAAGAGAACGCCTTGCTTCTTTACAACTACGGTAGCAAAGGGGGTCCGACCAGTGAATTTCTGGCTCTGGAGATAGTGGATAGGAAAGCGAGACTCTCTTATAACCTGGGAAACGGCACTGTGAGGCTGAACACTGAGAAGATCATAGCAGATGGGCACTTTCACACCGTCTCTGCCAGCAGAACAGGGAAAGTTGCTGCTCTAGAAGTGGACAGCTGTTCCGAAGAGGAGAGCGATGGGTTCTGTTATTCACGGAGCGAAGGAATTGGCGTGGAGAGGACATTGGATGTGGGCTCCAATAACATGATGTTTGGCGGCATTAAGTCTATCGACCCCATTTTGCTACGGCCAGGTCAAGTCAGGACTGATGACTTTATTGGATGTGTGAAGGATGTCTGGCTAAATGGTGTTCCTTTAAACCCTTTCCGATCCTTGGCAGCTCGCAATGTGCTTGACAGTTGTCCACGTAAAGGCCAGCCATGTGGCAGCTACGTGTGTCTCAATGGGGGGACGTGTCACGACCACTGGTCCTTTCATCTTTGTCAATGTCTGGATGGTTTTACTGGAGAAAACTGTGACGCAGGATTCAGGGGATGTATCGCATATCTCAGATACAATGGGCGCATGTTACCCTTCTCTGGATTTAATGAAGTGGTGGAAGCACGACCCAGTCACCCTTTAGTCCAAGCTGGGTGTGTTTCTGCCAGTCTTTGTGTGACCCCCCTGTGCTCCGAACAGGCAACCCCATCGTCATGCCTGACCCAGCCCTGCATGAATGGAGGCACCTGCAACATCCTTGCTGGGGGCAGCGTGACCTGTAGCTGTGTATTGAATTTCACCGGTGTCCTGTGTGAACTGTGCTCATCCTCGTTCGAGAACCGTGCCGCTTGTCATGAAACGGAAGCCAGAGCGCCTTTGTGGATAACAGCCATTGTGGTCCCGGCCTGTCTGGTGCTGATGTTTTTGGTGATTGTGCTGTTTCGGGCACAggctgtgtgttgcattaagcGGAGCCAGGAATCCAAATCGctgcaaaaaggaaaacaaggtGCTGATAACAAAGCTTTTTGTGACGACAGCGCAGATGCGTCTGTGCTGGACGTCCCTGATCGTAAAGATAAACAGCCAGACGTTATCaaggcagagacacagaggcacACAACAGAGCACAGCATCAGTACAGGGCAGCCTGGTCTGTACCATGGCCTTATAGACCCTGACCTTGAATACTACGAAATAGAGAGCACCAGTAGTGATATCCTATACGAATCAGATGCTTTTCACCTTAGACACACCCCCAAACACAACTCAACATGCTATGCGATGGGAGCACAGGTTAGAGTGCAGAGGGAGTTGCCCAATCCTGAATCTCAGCAGCTTACtaaaatgtctgccaaggaATGCAAAGAACAAAGTTTCTTCTCGGGGCTGCAAACTTACTCCTCACATCTTGTCCCCGAGGGCACAGGCAATTTAAGACCAGCTGAAAGAGGTGAATTCAGCAAAGTGGATTATGAATCAGGACTAGATTTAGAGCTACCTTTTCTCTCCAAGGCATTAGCAAGGAGGACACATTTACCAGAGGCAATCGGGCCTCCTCTGGGTTTGTCTGTAGAGGAGGTGAAGAAACTGAATGCACCTCAAGCCTCTGTTCCACTACAAGGGCAGTTGAAGGTAAGGTGTCATCCTCCGCAGCGTGTATATGCAGCGCCAGCCAAGATGCCAGAGAGCTCCTCGGAAAGCGAGAGCCACAGCTCCTTTACCTGCTCAGAGTATGAGTACGAGAGGGAGCATTCCTTCACCAACAAGCAGCAGGCTGTCCACAGTGCCCTGGCTGACTACCACATCAGACAGGAAGAGAGCAGAAAGACCTCCACTCCTGACTATCCATTCACCAGCTATGACGTTGACAGGAGAGTTGACTCTTCTTCTCCTGAAGGGGCTGCTCAGCACTGGGAAAGCTTGCTGAATTTAGGCCTCCACTTTCAGGACTATGCCGCCGTTTTTGAGGACATTGCAAATTTGCCCATTGAATTAGAAAATGTGTACACACTCTGCGCTGACAGAAGGAGTGAGCTGGAAGAAATATTCTGA

Function

GO: NA

KEGG:

id description
K16669 FAT4; protocadherin Fat 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016158 True 8601 mRNA 0.46 13 9532102 9550216

Neighbor

gene id symbol gene type direction distance location
AMCG00016157 katnal1,LOC107578067,LOC107697436,LOC107741157 coding upstream 10147 9510024 ~ 9521955 (+)
AMCG00016156 hmgb1,LOC105901051,LOC103353583 coding upstream 33310 9494462 ~ 9498792 (+)
AMCG00016145 NA coding upstream 126060 9396602 ~ 9406042 (+)
AMCG00016143 NA coding upstream 245227 9237700 ~ 9286875 (+)
AMCG00016140 NA coding upstream 412664 9117902 ~ 9119438 (+)
AMCG00016160 NA coding downstream 107374 9657590 ~ 9658570 (+)
AMCG00016163 NA coding downstream 174373 9724589 ~ 9741418 (+)
AMCG00016168 NA coding downstream 241098 9791314 ~ 9797697 (+)
AMCG00016170 NA coding downstream 262599 9812815 ~ 9813758 (+)
AMCG00016175 NA coding downstream 1284113 10834329 ~ 10842459 (+)
G11572 NA non-coding upstream 198243 9330891 ~ 9333859 (+)
G11570 NA non-coding upstream 217668 9313998 ~ 9314434 (+)
G11511 NA non-coding upstream 427920 9103625 ~ 9104182 (+)
G11510 NA non-coding upstream 430786 9100911 ~ 9101316 (+)
G11508 NA non-coding upstream 434175 9097269 ~ 9097927 (+)
G11672 NA non-coding downstream 413748 9963964 ~ 9964237 (+)
G11674 NA non-coding downstream 418326 9968542 ~ 9968783 (+)
G11678 NA non-coding downstream 458823 10009039 ~ 10009385 (+)
G11681 NA non-coding downstream 547482 10097698 ~ 10098122 (+)
G11684 NA non-coding downstream 585712 10135928 ~ 10136190 (+)
G11545 NA other upstream 305857 9223412 ~ 9226245 (+)
G11509 NA other upstream 432066 9099420 ~ 9100036 (+)
AMCG00016136 NA other upstream 443069 9068281 ~ 9089033 (+)
AMCG00016101 trim3b,LOC108423836,LOC103363426,LOC107701140,LOC107720632 other upstream 2053516 7446450 ~ 7478586 (+)
AMCG00016103 NA other upstream 2230060 7269855 ~ 7302042 (+)
AMCG00016159 ubl3,LOC107578048,LOC106604009 other downstream 9248 9559464 ~ 9591649 (+)
G11660 NA other downstream 48599 9598815 ~ 9599156 (+)
AMCG00016174 NA other downstream 1293911 10844127 ~ 10958032 (+)
G11921 NA other downstream 2318609 11868825 ~ 11871735 (+)
AMCG00016202 NA other downstream 2442756 11992972 ~ 12005952 (+)

Expression


Co-expression Network