AMCG00016171


Basic Information

Item Value
gene id AMCG00016171
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 9904963 ~ 9919774 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016171
ATGCCATTTACAAACCTTACAGCTGAAGCCATAACAGAATTTTACATCACTGGTTTCAGTGAGACTCAGCATCCAAAGGCAGTCGGATGCAtcattttgatcatttatttactgattttattGTGTAGCAGCACAAACATCTACATCATCACAAGGGACAAGCGTCTGCACACCCCAATGTACTTCTTCATTTGCAGTCTCTCTGTTGTAGACATCATCCACAGCACCAGTACGAGCCCAGCAATGATCCTGGTCCTAATAGCTGACATCACTGCAATCTCTTACAGACTTCCTTACTGTCGAACCAATCTTAAATATGCTTTCTGTGACTATGCTGCTATGGTTAGGGCAGCTTGTGTCAATCCCGATGAATATTTTGTTGCATCAGCTGTGATCTCcttcttaattttatttgtttcatttggttttatttttatatcctaCCTTAAGATAATCTTCACTGTGCTTAAAATTGCCCCCTCAGAAGACAGGGAAAAAATGTACAGCACTTGTTTAAACCACTTAATAGTggttgtctgtgtttttgttccacCATTTGTCAGTATTATTCTAACCCGTATAGGTTTGGTGTTGAGCCTCACAGAACgtcatgtattaattattttctcttctctggGCCCCTGTTTGGTGAATCCTTTTGTGTACTGCTTCAGAACAAAGGAAATAAGAACTGAAGCCATAACAGAATTTTATATAACTGGTTTCAGTGAGACTCAGCATCCAAAGGCAGTCGGATGCATCattttgataatttatttactgattttattGGGCAGCAGTGCAAACATCTACATCATCGCAAGGGACAAGCGTCTGCACACCCCAATGTACTTCTTCATTTGCAGTCTCTCTGTTGTAGACATCATCAACAGCTCCAGCAACAGCCCAACAATGATCCTGGTGCTATTAGCTGACATCACTGCAATCTCTTACAGACTTCCTTACTGCCGAACGACCCTTTCATTTGCGTTTTGTGACTATGGAGCTATGGTTAGGGCGGCTTGTGTCAATCCTGATGAATATTTTGCTGTATTAACTGTTCttgctttcttcattttatttggttCCTTTGCTTTGATTTTTATATCCTACCTTATGATAATCTTCACCGTGCTTAAAATTGCCCCCTCAGAAGACAGGAAAAAGATGTACAGCACTTGTTTAAACCACTTAATAGTagttgtttcagtttttgtccCTCCATTTGTCATTAGTATTCTCCCACGCATAGGTTTGGTGTTGAGCCTCACAGAAcgtaatgtattaattattttctcttctctggGCCCCTGCTTGGTGAATCCTTTTGTGTACTGCTTCAGAACAAAGGAAATAAGAAGTCAGCTTTTCAGAATATTCAAGGCTATTAGCGCAAGCATCTTCAGCAAACTCTTCAACCTGAGAATCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016171 True 1431 mRNA 0.40 6 9904963 9919774

Neighbor

gene id symbol gene type direction distance location
AMCG00016172 NA coding downstream 21 9904043 ~ 9904942 (-)
AMCG00016167 NA coding downstream 32538 9863271 ~ 9872425 (-)
AMCG00016169 NA coding downstream 70681 9833338 ~ 9834282 (-)
AMCG00016165 NA coding downstream 137041 9767215 ~ 9767922 (-)
AMCG00016164 NA coding downstream 191845 9712133 ~ 9713118 (-)
AMCG00016173 NA coding upstream 155681 10075455 ~ 10118219 (-)
AMCG00016178 NA coding upstream 1081966 11001740 ~ 11034263 (-)
AMCG00016177 NA coding upstream 1114492 11034266 ~ 11126738 (-)
AMCG00016179 NA coding upstream 1304682 11224456 ~ 11237516 (-)
AMCG00016185 NA coding upstream 1524581 11444355 ~ 11445310 (-)
G11662 NA non-coding downstream 208909 9695773 ~ 9696054 (-)
G11658 NA non-coding downstream 310010 9589735 ~ 9594953 (-)
G11650 NA non-coding downstream 361220 9543508 ~ 9543743 (-)
G11633 hmgb1,LOC105901051,LOC103353583 non-coding downstream 406210 9435802 ~ 9498753 (-)
G11571 NA non-coding downstream 590516 9314000 ~ 9314447 (-)
G11675 NA non-coding upstream 48803 9968577 ~ 9968783 (-)
G11677 NA non-coding upstream 70833 9990607 ~ 9991140 (-)
G11680 NA non-coding upstream 94426 10014200 ~ 10014451 (-)
G11688 NA non-coding upstream 317721 10237495 ~ 10237800 (-)
G11699 NA non-coding upstream 408945 10328719 ~ 10329089 (-)
AMCG00016134 NA other downstream 1077203 8823545 ~ 8827760 (-)
G11326 NA other downstream 1710531 8191546 ~ 8194432 (-)
AMCG00016119 NA other downstream 1780930 8119221 ~ 8124033 (-)
AMCG00016110 ufm1,LOC107701138 other downstream 2151526 7680911 ~ 7753437 (-)
AMCG00016074 NA other downstream 4975063 4903856 ~ 4929900 (-)
AMCG00016176 NA other upstream 914638 10834412 ~ 10847811 (-)
AMCG00016194 NA other upstream 1846378 11766152 ~ 11781547 (-)
AMCG00016203 zdhhc20,LOC108438268,LOC106578454,LOC108256609 other upstream 1912654 11832428 ~ 11947322 (-)
AMCG00016211 NA other upstream 2403387 12323161 ~ 12329033 (-)
AMCG00016226 NA other upstream 2930104 12849878 ~ 12870560 (-)

Expression


Co-expression Network