AMCG00016174


Basic Information

Item Value
gene id AMCG00016174
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 10844127 ~ 10958032 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016174
ATGGAATCCGAGAAGAGCTGCAACCGCATATTTCAGCAAGgtGTCAAAAAGCAGCAGAACAGAGTATTGAGAAAGCCGTTAAcaacaatggaaaataataagacATTTGCCAAGCCCGTGGGGTTTTTGATTGCTGGCTTTCAGTCCGTTCCTCATGGTGaatattatttcatcttcctgGCTTTTGTCTATCTGGGAACCCTGCTAGGAAACTTCCTCCTCATGTCAGTAATATGGCTGTCACACAGCCTCCACACACCTAAGTACTTGGCTGTTTTTAGCTTATCTATTGTGGATGTGAGCACCAGCACAGCGCTTGTTCCAAAATGTATTGACTACTTTCTTTTTGACTCCAGATTTGTGTTGTATGATGCCTGTCTAACTCAGATGTTCTTCTTCCATTATTTTTACTCCATGGAGTCTCTCTCACTTGTTGTCATGGCTTACGAGAGACTCATCTCTATTTGTTTCCCACTGCGAAGCAGCGccatcaacacaaacacaaggatGGTCTGCATTATCTTGTTTTgctatgtttttgcttttgccaTTCTGCTCGCTTCGATGATTTTGATAACACGCCTGTCATTCTGTCAACCAGTGCCACTCATTATCAGTTATTTTTGTGATCACGGTCCGACTGAGGAGGTCATGGAGCAGATTAAAAAGTTCATCAGAAGACGAATGGTTAAACCACTGGCACTTCCTCCAGTCCTGGTGCTCCGCCATGCAGTCCTGCACAGCGTGATGCAGATCAGCACAGCCGGTCTGGGAGATCATCTTATCCACCGGGTCATCCTGCTCCTCGCTGCGGCTGCGGTTGTGAGTGGTGGTGAGAAGAAGAAGATGCCAgctgaagagaaagaaaagacagcACCTTACTCTCATGgTTCTTTTGTGACGCAGGACTTTGCGGTACCGCGACCTGCTGGCTTCTCTCTTGGCTGTTCTCGGGTGCAGGCTTCTCTCTCGGCTGCTCTCGGCTGCTCTCTGGGGTACACGAGAGAGGACTGGGCAGCTGCTCATGGCTTTAGGACATTCCTCATCATTGTCATCCTCAGAGTCCTGCTCTGTGAACTCCAACAGGTCTGGCACTGCTGGCCTATCTTCCTCCTCTTCGTCATTGGGTTCGGGAAGGTGGTGGGGCAGTGCCCCAATGCCCGTTACAGACTGGCCACCAGTGGTAGGGACCCAGAAGGGGGAAACTGA
>TU14515
GGGGTTTTTGATTGCTGGCTTTCAGTCCGTTCCTCATGGTGaatattatttcatcttcctgGCTTTTGTCTATCTGGGAACCCTGCTAGGAAACTTCCTCCTCATGTCAGTAATATGGCTGTCACACAGCCTCCACACACCTAAGTACTTGGCTGTTTTTAGCTTATCTATTGTGGATGTGAGCACCAGCACAGCGCTTGTTCCAAAATGTATTGACTACTTTCTTTTTGACTCCAGATTTGTGTTGTATGATGCCTGTCTAACTCAGATGTTC
>TU14518
CGTGACTTATGTTTGTGTCATgtcacaattattttaatcacagtCACTTAAGTCACTTAAGAACAAACCCTCCCGGGAAAATAAAGCATTCCCACACACATTCAAACGGGAAACTGCCACCTACAGCAACTAACAGATCAACCCTcagttgtataaatgtaatgattattgTGTGTCTGATTTTTATCATGAAATCAGGATTGACGTCGTTGCAAACTCAGGAAGTTATTTCAAATTGACTGTGGCCGGTAAACGTCTTTTCATCGGATTCACTTATCAGGGGTTATAGGTCGCGGTCGAGTAGAACAGATgtgcgcagttctgcgcggctccaccaatgggagcgctggaattctgcagatctgcgcacaacTGCGGACATTGTCTCAGGTCTGCGCCTGTGGCAGCCTGTGCCTCTCCATCGCCTGCGCTCTGACTTTCTGAAACGCCAGCATGCAGTCCTTGAAGCTCTGCACCTGCAGCTGGCACTTCCTCCAGTCCTGGTGCTCCGCCATGCAGTCCTGCACAGCGTGATGCAGATCAGCACAGCCGGTCTGGGAGATCATCTTATCCACCGGGTCATCCTGCTCCTCGCTGCGGCTGCGGTTGTGAGGTGAAGCGGAGGCCATGCTGGATCCCTGTCTTTTTATTGCCCTGACTATCAGGAAGACTGACTTCAGTCGACAGGAAATGTGCTACTTTAAAATGTGCTCGACTGAGTCCTCAATGCTGTAGTTGCAGTGCGCAATAGATCCACCAGAGGGCAATATTGCCACATAAATGATGCGGCATTCGGACTCTTCATTTAGTTTCATTtcgagaaaaaaaaacctgctgcgACTGGAAAAAAAGTGCTCTTATGATAATATACATATCGATTTGACTCTAAATTGTATTACAGACAGTGACTCTATATATTCGTAGACGTATGCGTGCATTCAAGTAAATATAGACGACTCCGAGTCTGTCCAAgcatgaaaaggaaattaaatctcTTTCAGCGAGATTTCAATGATCGAGGACGCAATGCTTTCAGATTGATTAGAAATgacttcatttttatatatgcaagttaattagaaacacaaaaataactttttggATAATTGCTTGTTTAAGCAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016174 True 1209 mRNA 0.49 9 10844127 10958032
TU14515 False 274 lncRNA 0.43 1 10844431 10844704
TU14518 False 1123 lncRNA 0.41 2 10846907 10848245

Neighbor

gene id symbol gene type direction distance location
AMCG00016175 NA coding upstream 1668 10834329 ~ 10842459 (+)
AMCG00016170 NA coding upstream 1030369 9812815 ~ 9813758 (+)
AMCG00016168 NA coding upstream 1046430 9791314 ~ 9797697 (+)
AMCG00016163 NA coding upstream 1102709 9724589 ~ 9741418 (+)
AMCG00016160 NA coding upstream 1185557 9657590 ~ 9658570 (+)
AMCG00016181 NA coding downstream 293115 11251147 ~ 11252118 (+)
AMCG00016182 NA coding downstream 411330 11369362 ~ 11370140 (+)
AMCG00016180 NA coding downstream 431777 11389809 ~ 11390312 (+)
AMCG00016184 NA coding downstream 557724 11515756 ~ 11530359 (+)
AMCG00016186 NA coding downstream 669661 11627693 ~ 11643410 (+)
G11726 NA non-coding upstream 176621 10667204 ~ 10667506 (+)
G11725 NA non-coding upstream 177083 10666695 ~ 10667044 (+)
G11723 NA non-coding upstream 191483 10652391 ~ 10652644 (+)
G11710 NA non-coding upstream 373349 10470501 ~ 10470778 (+)
G11695 NA non-coding upstream 550531 10293371 ~ 10293596 (+)
G11761 NA non-coding downstream 43418 11001450 ~ 11002646 (+)
G11774 NA non-coding downstream 186461 11144493 ~ 11144705 (+)
G11778 NA non-coding downstream 228360 11186392 ~ 11188082 (+)
G11792 NA non-coding downstream 279326 11237358 ~ 11240804 (+)
G11798 NA non-coding downstream 350086 11308118 ~ 11308357 (+)
G11660 NA other upstream 1244971 9598815 ~ 9599156 (+)
AMCG00016159 ubl3,LOC107578048,LOC106604009 other upstream 1252478 9559464 ~ 9591649 (+)
G11545 NA other upstream 1617882 9223412 ~ 9226245 (+)
G11509 NA other upstream 1744091 9099420 ~ 9100036 (+)
AMCG00016136 NA other upstream 1755094 9068281 ~ 9089033 (+)
G11921 NA other downstream 910793 11868825 ~ 11871735 (+)
AMCG00016202 NA other downstream 1034940 11992972 ~ 12005952 (+)
AMCG00016213 NA other downstream 1477104 12435136 ~ 12461265 (+)
AMCG00016221 NA other downstream 1820192 12778224 ~ 12786899 (+)
AMCG00016241 NA other downstream 2313552 13271584 ~ 13389636 (+)

Expression


Co-expression Network