AMCG00016178


Basic Information

Item Value
gene id AMCG00016178
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 11001740 ~ 11034263 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016178
ATGTCATCTGAAATGACCACCACATCTGTCCTCAACAGCACGTTTGTCCGGCCAGATGGATTCTACATCCGTGGTTTCTATGCCTTGCAGCACAGcaattactattttatattcCTGGGGGTTCTTTACGTTGCTACGTTTATGGTCGGATTGGTGACGCGCTTATCATACTGTAAATCTACAATCGTTAACAGTTATTTTTGTGATCATGGGCCGATCTTTATAATCACTTGCAGTGATTATTCTAAGAACTGGTTCATGGCTGCCTTTTTTaccgtttttttattttttctccctctggCGTTAATCATGTTGTCTTATGTTgctattctctctgccctgttAAAGATACCAAATACCGACGGTCGTagaaaagctttcaaaacatgTACTACTCATTTAGCCTTAGTTGCTATATTTTATGTACCTCTCTTAGTCACCTACATTGTGGTTTGGTCGTCACCGTCGTCGCTGCCCTCTGACCCCGACCCCTCATCCCCCCGGCCACAGCAGCAGTAG

Function

GO:

id name namespace
GO:0050896 response to stimulus biological_process
GO:0016020 membrane cellular_component
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016178 True 519 mRNA 0.43 3 11001740 11034263

Neighbor

gene id symbol gene type direction distance location
AMCG00016173 NA coding downstream 883521 10075455 ~ 10118219 (-)
AMCG00016171 NA coding downstream 1081966 9904963 ~ 9919774 (-)
AMCG00016172 NA coding downstream 1096798 9904043 ~ 9904942 (-)
AMCG00016167 NA coding downstream 1129315 9863271 ~ 9872425 (-)
AMCG00016169 NA coding downstream 1167458 9833338 ~ 9834282 (-)
AMCG00016177 NA coding upstream 3 11034266 ~ 11126738 (-)
AMCG00016179 NA coding upstream 190193 11224456 ~ 11237516 (-)
AMCG00016185 NA coding upstream 410092 11444355 ~ 11445310 (-)
AMCG00016183 NA coding upstream 437463 11471726 ~ 11475792 (-)
AMCG00016189 LOC107685497,LOC106603565 coding upstream 549551 11583814 ~ 11591097 (-)
G11759 NA non-coding downstream 23346 10978183 ~ 10978394 (-)
G11754 NA non-coding downstream 57966 10943526 ~ 10943774 (-)
G11751 NA non-coding downstream 93664 10907853 ~ 10908076 (-)
G11741 NA non-coding downstream 156338 10845186 ~ 10845402 (-)
G11734 NA non-coding downstream 286213 10715319 ~ 10715527 (-)
G11801 NA non-coding upstream 306607 11340870 ~ 11341449 (-)
G11805 NA non-coding upstream 353468 11387731 ~ 11388125 (-)
G11807 NA non-coding upstream 365944 11400207 ~ 11400418 (-)
G11814 NA non-coding upstream 449299 11483562 ~ 11483793 (-)
G11858 LOC106904821 non-coding upstream 667328 11701591 ~ 11717417 (-)
AMCG00016176 NA other downstream 153929 10834412 ~ 10847811 (-)
AMCG00016134 NA other downstream 2173980 8823545 ~ 8827760 (-)
G11326 NA other downstream 2807308 8191546 ~ 8194432 (-)
AMCG00016119 NA other downstream 2877707 8119221 ~ 8124033 (-)
AMCG00016110 ufm1,LOC107701138 other downstream 3248303 7680911 ~ 7753437 (-)
AMCG00016194 NA other upstream 731889 11766152 ~ 11781547 (-)
AMCG00016203 zdhhc20,LOC108438268,LOC106578454,LOC108256609 other upstream 798165 11832428 ~ 11947322 (-)
AMCG00016211 NA other upstream 1288898 12323161 ~ 12329033 (-)
AMCG00016226 NA other upstream 1815615 12849878 ~ 12870560 (-)
AMCG00016246 prdm15,LOC108413920,LOC102786849 other upstream 2509085 13543348 ~ 13559184 (-)

Expression


Co-expression Network