AMCG00016186


Basic Information

Item Value
gene id AMCG00016186
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 11627693 ~ 11643410 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016186
GTTTGGATGCTCgccctttaaaatacattgccTCCCGTGTGACTGCGCGCCCCTTCCGGGTATACGAATAAAGTAACAAACTGCTGTTATCTGGCGCTACAGCATGGGCTGCAATGAAATCAGCCTGGATTTGGTTATTCCGCTGGCATTTTAGAAATCCCTCAGCTGCTGCAGGGACGCGACTACCAGCTGCTGGGGGACGGCGAGAATCACGTTGATCGTTTTAACTTCTTCAATTTGTACTAATAAATAACGTTGCATATGTGGACTGAATACCATAAATCAACAAGCAGACGTTTATTACAGTAGTAGTCTATGTCCACTTTGGCTCTGTTGTCAGAGATCGCTTAGCCCGTCGCGTCGGTGGTGGCCGTGTTCTCCTCCAGCTGTACCCGGCTCCCCAGCCTGGCTGCCCGTTAAGATGCTGCAGGGGCCCTCAGCTTTGGACCGAGACAAACCTCTGTTCCGGGTGCGTTTCACCAAATTCATCGTGGCCACGGTCCTCCTGCCGCTGCTGGGCTTCTTCTCCTGCATCTTCATTTctttgatttttcatttcagagagTCCACAGCTACACATTGCGGGGTTCCCAACTACCTCCCCTCCATCAGTGCCTCCATAAGTCTAACCCCAGAACGTTACATTTGGCGTTTCTGCATTGGCCTGCACTCTGCACCCCGGTTCATGATAGCCTTGGCCTACTTAAATTTCTATCGCATCCACCTCTCATCCCGACGCATCTATCTACTGCTGAACTATCTCAACCTGATCTTCAGCGTGTTGGAGAACGTGGGTCTTCTCCTGCTTACCTATGTGTCTTCAACTGAGACGTATAAGCTCCATAAAAATGGCTTCATCATGTTCATTTGTAGTGCGCTCATCCATATGATGATCACTTGCATTCTATGGAAAATGGTTAAGAAGTATTCAGTAAGTCCAGAGGACCAGACATCCTACCTCTGGAAGACTCGCCTCTGTGCCTTCAGTGTGATCTGCTGCCTCTTCGCGCTCTACTTCTACGTCCGGCACAACAAATACTGCGAACCAGGCAttTACACCTTCTTTGCATTCTTCGAGTACCTGGTTGTCCTTTCTAACATGGCTTTCCACTGGACGGCATACTGGGATTTCGGAAACAAGGAGGTGATGATCGCCACCCCCCCGGAGGACAAGCGCTTCTGACAGGGCAACCGAGGCCTCAGGAACAAGAAGAATCCTGGGAACGCTTACGAATTGAAGGATGCCACCGGGATCAAATCCGAGGAAGGTCTTTTTCATATCTTCGTTTGAGGTGCAGTGGATGCCACTAACCATTTCAGTGATGTTTGTCTCCTGACCACATAGAAACAATCCTGCTTATTGCACACAGCAGATTGAGTTGAAATCTTTAATCATAATATCGAAAAAGAAAGGGAATGCAGTGGGatctttacaaaacattttccgCAATGTGCATTGTTACACATACAAGTGTTAGTGATGGTCTCCACATCTCCACATCTTAAAGCAGCATTTAAAGGATTTTTAGACTGTTGAGCAGATGTGCTTCGAATTGTCTTCTCCGTTATTCCTTGCATTTTGTCATGCCAAACTGCAGTGCTAGCATATTGGGATAGTTTTGTGTTGCTAAAGGGTTTCTCTATGCTTTAAGCAGAACAATTCCCCAGCTCTGACATCTGCTTTCTGCTGAAGGGAATGCTTAGAGTTCGGCCCCTTTTCCTCTTTTCCCAGACATTATACAGTTCTGTGAAGCCTAGAAGGATGCCAGTAACTGCATTGGCAAAAGGGATGTTTTTTCTGTACTATTAGCACCTGACCactatatttaatttctctctctcttttttcttttgttattcaccccccttttttctgtatttaagtGAAGTTTTCTCACCACGTACTAAAATccatctctgtccctctgtcacATACATGGACTCCACTTCTAACAGCTGTTCTGTTTCAAGCATCTCCCACAAACCCCAGGCTTCACCGTCAACGGCGGAAGCAAAGCGTTTGTTTCCCGCTTCTTTGCTTTGTTCTAGAGGCGCTCAGCATTCCTGTCGATCCCCTTTCGGGTTTGTGTTTCAGGTCCTTGAATTGTGGAATTGTTGTGGCTCTCTTCTATTAACCCTCTTAAGCACTCATCATAACCAGTGGTGTCCAGGGGCTCCTTCCTGGGATTTTCCATCCTTCCTTCTGTCATTCTGAAACCCCACAGTGACAGAGACTCCCTTTCCCTGTTGTGTAACTGGAATATTCTGTCCCCAGGACTCGCTCATGCTCTCCACACTGTTACTGCCTGACGTTTGTTACATATTGGTATTATCAACTCAACAGACATCACATGCATTGTGTTGAGGGGTTTTAGCTAGACAAAAAGCGATGTATAAGCTATGTTGAAGTCTGCTATAATTAAGTGAATCtcaggaaatgttttcttcccCTTTGGGGGGGTGTAGTTcccttttttgttgtgtttttcacctCGAAATGTGAACATTGTAACTTCTGAGAATTGTACACTCTGTATGCAGTTTTAATTGTTGACCAAAAGCCCTTTTTGGGGCTCAAGTATTGGAGGACAAGCTTATTTTAGTGTATAGTAATGCTAGGGTGTCATTGCTCAGAGCATTGCAGATGGTTGCACAACCGGTTTTGTCCCATTGGATGTTTACAAACGCTCCTTCGCACATTCTGTAGTGGATTGGGTCATTTTGGGGTTAAGGATCCCAAGTCGTCtttaatcaatttaatgtacatttattaggTCTCTTTAATGATTAGCTGTTTGATTACTAGAGGTTTAAATGCTAAAAACAGAGAAATCGGCTCCTGGTGTGACCTCTTGTGACCATGTCCAAAATATACCTGAGGgaagtgtgttttaaatcagAGTAGACCCAAAATATATAGTGCCGGACTGAAATTCTTAATCTCTATTCTGAATTTCTTACTTAAGAGTAAATTAATGGACTGCATTGATGGCCATTCAACCTTTGAAGCACTTCTTGAAATGATTGTTAATTTTATAtccaagttttatttttgccatatgagatgtcatattttttatataatagtcTGGGCCAAATAAAACACCAGTGATTGAAAatcttgtaaataaaaaaaaacaaaaaaaaacacttatctAAATTCAATGGCATAATTcagtatttttgcattttagcCTGATGTCTTACTCACCCATAGTCATACGAATCcaaccttttttatttctatgcGTCCAGTTTGAATTTATCGTTTCGTTAGCTGAGCACaattgctggaagtcaatggtcACAAATCACTGACTCAAAACTGGCTAATAAATcttataaatacttaaaagcgTTGCCGTTTGTCACTTGTAGTcctaaaatactatatatatagtaaataaatatatagtatactatatatagttcaatacattaattaatttactagTAATCGTAAGAAATTAGTTTCCACATACTGCCTTATTTACAGACTACTTCATGTTCTGCCTGTGCTCTCTGTGTTATCATTCACGCACAGCTAGCATATCCTTGTGCCACCtcatcacagctgatgaaatgtGTAGTTCGGCGAGagttccaaaataaaaatgtttaaatatattaatcaaaatacTATAGATCTGGTATAGACTTTGAGACTTCATTTACAAATGTGCTCCACACAGCTTttgagcatttaaaatatatatttgccaagGTTTGAGAGTTGGAGATTTGCAACCATTTGCTTCCCCCAATTGTGCTTagctaacaaaacaataaattcaaatttcttcaaactggacgaacagaattaaaaaggtttccatggattcGTATGCCTATGGACGTGTAAGacatcaggctaaaatgccaaaataccgaaGTATGCCTTTAAGTCTCTTCCAGGGAATGCCCATTCAAATGAAGGTAAACTGAAAATGACATTGGTATCGGAGTGCTTTATTAAAATTCgttttttgtaattgtacaaGCAAAGTATAGGATACATTAGTATGTCTTACACCAATACACAATATGCTTATCAGGTGAAAATGTTATGAGCCCTGTAATAAACAaagatacaaatgtaaaaaagcaaaaatatctTCTGTTTTACAGGACaggaaacaaatgcatataattGTTGTAGAAAAAGCtgtcactgaaaatgtaatgtactaAAGACTTCAGCCTGTGTATCAAAAGCATGACTTATGGTAAATACTTAAGGTTTCATATTGAGGCCAGGAGCAAACTGCAACTATCAGACCAGACTGTCCTACTTTTGCTAAACTTTCTGCAAGATGTTTCTTTTAGGTGGGAGGACAAAAGTTGTGACAAGAACTCCCGCCTACTGAGGGCCAGCCCCAATGACAGGGACCTTCTCAGAGGGTTAATGGGGGGGCATTGACtgaaataattttttttaattaacttattgtGCTCCCATTTTAATCGTAACAACTCCTTTTTTCATGCTTAATCCGGTAACTGTTGCTTCCGTGACTGAATTAATGTTTCAATGTGGGTCCAGTGAGATCATGCTTTCTAAGCAGATGTACTAAATAAATGTCTTGTTACAAAAACATCTTGAGGTGAATGCATGAATCcttattgttctgtttgtggCAAGTCATTGGTTGACCTGCTTTTGAACCCCCAGAATAAAGTGGTCCAGCTCTGTTCCTAATGGGATACGAGGTCTTCTGGTTTGCCAATACACCCGACCTCTTGGTTACATCAGTGATTAGATGAATgataaattaacttatttttcaaGTCTTATTGCCTTAAAGCcctaacttttgttttttgccttgCTTTGAATCTTCCTTCTACTTAAGGAAATACTGGACAACTGCTAAATTTATCATGCTGTAGTTTCCCAGAATATTAAAA

Function

GO: NA

KEGG:

id description
K23552 PGAP2; post-GPI attachment to proteins factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016186 True 4908 mRNA 0.41 6 11627693 11643410

Neighbor

gene id symbol gene type direction distance location
AMCG00016184 NA coding upstream 97334 11515756 ~ 11530359 (+)
AMCG00016180 NA coding upstream 237381 11389809 ~ 11390312 (+)
AMCG00016182 NA coding upstream 257553 11369362 ~ 11370140 (+)
AMCG00016181 NA coding upstream 375575 11251147 ~ 11252118 (+)
AMCG00016175 NA coding upstream 785234 10834329 ~ 10842459 (+)
AMCG00016190 LOC102214188,LOC103353587,LOC101465674 coding downstream 37390 11680800 ~ 11717040 (+)
AMCG00016193 NA coding downstream 90468 11733878 ~ 11741377 (+)
AMCG00016192 rrm1,LOC107684690,LOC106920178,LOC103364515,LOC103136300 coding downstream 98073 11741483 ~ 11749371 (+)
AMCG00016191 NA coding downstream 108108 11751518 ~ 11764647 (+)
AMCG00016198 NA coding downstream 138770 11782180 ~ 11791632 (+)
G11813 NA non-coding upstream 143900 11483562 ~ 11483793 (+)
G11798 NA non-coding upstream 319336 11308118 ~ 11308357 (+)
G11792 NA non-coding upstream 386889 11237358 ~ 11240804 (+)
G11778 NA non-coding upstream 439611 11186392 ~ 11188082 (+)
G11774 NA non-coding upstream 482988 11144493 ~ 11144705 (+)
G11846 NA non-coding downstream 74673 11718083 ~ 11719651 (+)
G11847 NA non-coding downstream 76369 11719779 ~ 11720408 (+)
G11848 NA non-coding downstream 78658 11722068 ~ 11722558 (+)
G11849 NA non-coding downstream 79787 11723197 ~ 11723601 (+)
G11850 sc6a7 non-coding downstream 83532 11726942 ~ 11727423 (+)
AMCG00016174 NA other upstream 669661 10844127 ~ 10958032 (+)
G11660 NA other upstream 2028537 9598815 ~ 9599156 (+)
AMCG00016159 ubl3,LOC107578048,LOC106604009 other upstream 2036044 9559464 ~ 9591649 (+)
G11545 NA other upstream 2401448 9223412 ~ 9226245 (+)
G11509 NA other upstream 2527657 9099420 ~ 9100036 (+)
G11921 NA other downstream 225415 11868825 ~ 11871735 (+)
AMCG00016202 NA other downstream 349562 11992972 ~ 12005952 (+)
AMCG00016213 NA other downstream 791726 12435136 ~ 12461265 (+)
AMCG00016221 NA other downstream 1134814 12778224 ~ 12786899 (+)
AMCG00016241 NA other downstream 1628174 13271584 ~ 13389636 (+)

Expression


Co-expression Network