AMCG00016189 (LOC107685497,LOC106603565)


Basic Information

Item Value
gene id AMCG00016189
gene name LOC107685497,LOC106603565
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 11583814 ~ 11591097 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016189
TGCTGGGGTGCCCATGGGAAATATGCCCACAAGCTCCTTAATGATTTATTCGCCAACTACACGAGTGCGCTGAGGCCAGTGGAGGACACAGATAAAGCCATGAATGTCACTCTACAGATCACCTTGTCCCAGATCATCGACATGgATGAGCGCAACCAGATCCTCACGGCCTACCTGTGGATCCGACAGGTGTGGATCGATGCGTACCTCACCTGGAATAAGGATGATTATGATGGACTTGATACCATCCGCATACCTAGTAGTTATGTATGGAGACCTGATATAGTCCTATATAACAACGCCGACGACCAGTTCACCGGCTCCATGGAGACCAACGTGGTGATCCGGCACGACGGGCAGATCATGTGGGACTCACCAGCCATCACCAAGAGCTCCTGCAAAGTGGACGTCTCCTTCTTCCCCTTTGACGCCCAGCAGTGCCGGCTCACCTTCGGCTCCTGGACTTACAACGGCAACCACATCGACATCTTGAATGCCCTGGACAGCGGGGACCTGACTGACTTTGTGGAGAACGTGGAGTGGGAGGTCCTGGGCATGCCAGCCAAGAAGAGCGTCATCCTTTATGGCTGCTGCTCTGACCCCTACCCTGATGTCACCTACACCCTCCACCTCAAACGGAGGGCATCCTTCTACATCTTCAACTTGCTCATCCCTTGCGTCATGATTTCCTTCCTGGCTCCACTTGGATTCTACCTGCCCGCGGACTCTGGGGAGAAGGTGTCCCTGGGGGTTACTGTGTTGCTGGCCCTTACTGTCTTTCAGTTGCTAGTCGCGGAGAGCATGCCTCCCTCAGAGAACGTGCCACTCATTGGAAAGTATTACATTGCCACAATGACCATGATTACTGCCTCGACTGCGTTGACCATCTTCATCATGAACATCCACCACTGTGGTCCAGAAGCCAAGCCGGTCCCCAAGTGGGCCAAGAAGGTCATCCTGCAGTACATGGCCCGAATCTTCTTTGTGTACGAAGTGGGCGAGAGCTGCTTAAGCCCCCAGCAAAAGAACCGAGAGCCCAGGCCTCAGAACAGCACTGGATGGACGGCGAATGGGCAGGCCAGGAAAGAAAACTTTGTGTTGAAGGTGAGGAGGAGTCAAGAGGACATGGAGCAGGTAGTGAGCCCCACTGACTCCCTGGGGAAAGACCACACCAACTTGTACAGCTCCTGGAAGGAAGAAGGGAAGTTTGTCAGCTTAGATCAAGGGGACTCAACCAGTAAAGGGACCAGTGGAGGTGGCAAAGGGAAAGAGGCCGTTTGTAAAGCCCAGTGTTTGTGCCACCACCAGCAGCTCCTGAGGAACATTGAGTACATCGCCAACTGCTACCGAGATCAGAAAGCCACCCAGAAAAGGACTGGTGAGTGGAAGAAGGTGGCCAAGGTCATGGATCGCTTCTTCATGTGGATCTTCTTCATCATGGTGTTCTTCATGAGCCTGCTTATCATGGGGAAAGCCATCTGA

Function

NR:

description
PREDICTED: neuronal acetylcholine receptor subunit alpha-9-like

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K05312 CHRNN; nicotinic acetylcholine receptor, invertebrate

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016189 True 1482 mRNA 0.53 4 11583814 11591097

Neighbor

gene id symbol gene type direction distance location
AMCG00016183 NA coding downstream 108022 11471726 ~ 11475792 (-)
AMCG00016185 NA coding downstream 138504 11444355 ~ 11445310 (-)
AMCG00016179 NA coding downstream 346298 11224456 ~ 11237516 (-)
AMCG00016177 NA coding downstream 457076 11034266 ~ 11126738 (-)
AMCG00016178 NA coding downstream 549551 11001740 ~ 11034263 (-)
AMCG00016188 NA coding upstream 13720 11604817 ~ 11623059 (-)
AMCG00016187 rhog,LOC106613190,LOC107749931,LOC107667433 coding upstream 56634 11647731 ~ 11662835 (-)
AMCG00016195 LOC106953351,LOC103475760,LOC103145618,LOC106922176,LOC107098229 coding upstream 128318 11719415 ~ 11729797 (-)
AMCG00016201 NA coding upstream 226991 11818088 ~ 11836421 (-)
AMCG00016199 pdk3,LOC106578452 coding upstream 257187 11848284 ~ 11866869 (-)
G11814 NA non-coding downstream 100021 11483562 ~ 11483793 (-)
G11807 NA non-coding downstream 183396 11400207 ~ 11400418 (-)
G11805 NA non-coding downstream 195689 11387731 ~ 11388125 (-)
G11801 NA non-coding downstream 242365 11340870 ~ 11341449 (-)
G11759 NA non-coding downstream 605420 10978183 ~ 10978394 (-)
G11858 LOC106904821 non-coding upstream 110494 11701591 ~ 11717417 (-)
G11865 NA non-coding upstream 147248 11738345 ~ 11738599 (-)
G11996 NA non-coding upstream 647688 12238785 ~ 12239014 (-)
G12041 NA non-coding upstream 762063 12353160 ~ 12353381 (-)
G12046 NA non-coding upstream 763578 12354675 ~ 12355364 (-)
AMCG00016176 NA other downstream 736003 10834412 ~ 10847811 (-)
AMCG00016134 NA other downstream 2756054 8823545 ~ 8827760 (-)
G11326 NA other downstream 3389382 8191546 ~ 8194432 (-)
AMCG00016119 NA other downstream 3459781 8119221 ~ 8124033 (-)
AMCG00016110 ufm1,LOC107701138 other downstream 3830377 7680911 ~ 7753437 (-)
AMCG00016194 NA other upstream 175055 11766152 ~ 11781547 (-)
AMCG00016203 zdhhc20,LOC108438268,LOC106578454,LOC108256609 other upstream 241331 11832428 ~ 11947322 (-)
AMCG00016211 NA other upstream 732064 12323161 ~ 12329033 (-)
AMCG00016226 NA other upstream 1258781 12849878 ~ 12870560 (-)
AMCG00016246 prdm15,LOC108413920,LOC102786849 other upstream 1952251 13543348 ~ 13559184 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019811 CR847523.3 coding NC_007132.7 CM002905.2 40338033 ~ 40348790 (-)
grasscarp (Ctenopharyngodon idella) CI01000095_05454727_05465679 CHRNA10A, CHRNA10 coding CI01000095 null 5454727 ~ 5466458 (+)