AMCG00016192 (rrm1,LOC107684690,LOC106920178,LOC103364515,LOC103136300)


Basic Information

Item Value
gene id AMCG00016192
gene name rrm1,LOC107684690,LOC106920178,LOC103364515,LOC103136300
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 11741483 ~ 11749371 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016192
gttggtggagccgcgcagatccgTGCAGAACTGCAGCATCTGAAGGACCGGAACTCGTTACCTTTCACCTTTGACGTGCGGCTTCTGATTGGCATGTTTGCAGTTTGTGGCGGGTCGCAGGCACCGCGCAATTGTTCAGATGTGCGGGGTCTGTGAGGCAGCAGCTCAATATCTCTCCCATTTCAGCCAGCGGGAACCTTTTATATTATTCAACTTTATTCcgtattttcttaaaataagcGCCAAGACAATATGCACGTCATCAAGCGAgatggaCGCCAGGAACGGGTCATGTTTGACAAAATCACTTCCCGCATTCAGAAACTGTGCTATGGGCTCAATGGGGACTTTGTGGATGCTGCTCATATCACCATGAAGGTGATCCAGGGGCTGTACAGCGGGGTGACCACAGTGGAGCTGGACACCCTGGCGGCAGAGACGGCCGCCACCCTCACCACCAAGCACCCAGATTATGCCATCCTGGCCGCCCGCATCGCCGTGTCCAACCTGCACAAGGAAACCAAGAAGATCTTCAGTGATGTGATGGAGGATCTGTACCATTATGTGAATCCCCTCAATGACCGTCACTCTCCCATGATCTCTAAAGAGACTCTCGACTTGGTCCTGGCTCACAAGGACCGTTTGAATTCCGCCATTATTTATGATCGAGATTTCTCCTACAACTTCTTTGGATTTAAGACACTGGAACGATCCTACCTCCTAAAGATCAATGGAAAagTGGCGGAGCGTCCTCAACACATGCTGATGCGAGTGTCCGTCGGGATTCACAAGAGCGACATCGATGCAGCCATTGAAACCTACAACCTGCTGTCTGAGAAGTGGTTCACCCACGCCTCCCCCACGCTGTTCAATGCTGGTACCAACCGCCCACAACTTTCCAGCTGTTTCCTGCTGGCCATGAAGGATGACAGCATTGAGGGGATCTATGACACCCTGAAGCAATGCGCCCTGATCTCCAAATCTGCAGGGGGGATTGGTGTTGCCGTCAGCTGTATCCGAGCCACTGGCAGCTACATTGCTGGGACGAACGGCAACTCCAACGGCCTAGTGCCCATGCTGAGGGTGTACAACAACACGGCCCGCTATGTGGATCAGGGAGGAAACAAGAGGCCTGGTGCGTTTGCCATGTATCTGGAGCCCTGGCACTTTGACGTGTTTGAGTTTCTGGAGCTGAAGAAGAACACTGGGAAGGAGGAGCAGAGAGCCCGGGACCTCTTCTACGCCCTCTGGATCCCAGATCTCTTCATGAAGAGGGTGGAAAGCAATCAGGATTGGTCCCTGATGTGTCCCAGTGACTGTCCAGGTCTTGATGAGTGCTGGGGAGAAGAGTTTGAGAAACTCTATACAAGGTATGAGAGAGAGGGCCGGGCACGCAAGGTGGTGAAGGCCCAGCAGCTGTGGTACGCCATCATCGAGTCTCAGACGGAGACCGGCACCCCCTACATGGTCTATAAGGACGCTTGCAACCGGAAGAGCAACCACCAGAACCTGGGCACCATCAAGAGCAGCAACCTTTGCACAGAGATTGTGGAGTACACCAGCAGTGATGAGgtggcTGTGTGTAACCTGGCCTCTATCGCCCTGAACATGTATGTGACTCCTGACCGCACCTACGACTTCAAGAAGCTCGCCGAAGTCACCAAGGTCATTGTAAGGAACCTGAACAAGATCATCGACATCAACTATTATCCCGTGCCTGAGgctGAGACCTCCAACAAGCGTCATCGGCCCATTGGGATTGGTGTCCAGGGCCTGGCGGACGCATTCATCTTGATGCGCTTCCCCTTCGAAAGCCCAGAGGCCCAGCTACTCAACGCCCAGATCTTCGAGACCATCTACTACGCGGCCCTGGAGGCCAGCTGTGAACTGGCGGCAGAGCTGGGGCCCTACGAGACCTATCAGGGCTCACCGGTCAGCAAGGGGATCTTGCAATATGACATGTGGGAGAAAACCCCTACTGATCTCTTGGACTGGAAAGCACTGAAAGAGAAAATTGCCAAACATGGCGTGCGGAACAGCCTGCTGTTGGCCCCCATGCCCACTGCCTCCACCGCTCAGATCCTGGGCAACAACGAGTCCATCGAGCCCTACACCAGCAACATCTACACACGCAGGGTGCTCTCTGGGGAGTTCCAGGACCTGACTGAGCGAGGGCTGTGGAGCGAAGAGATGAAGAACGAGATCATTGCCCAGAACGGCTCCATTCAGGGCATCTCTGACATCCCAGAAGACCTGAAGGAGCTGTACAAGACTGTGTGGGAGATCTCCCAGAAGACCGTGATCAAGATGGCCGCCGACCGGGGCGCCTTCATCGACCAGAGCCAGTCGCTGAACATCCACATCGCAGAGCCCAACTACGGCAAGCTCACCAGCATGCACTTCTACGGCTGGAAGCAGGGACTAAAGACCGGCATGTACTACTTAAGGACGAAGCCGGCTGCCAACCCCATCCAGTTCACCCTGAACAAGGAGAAGCTGAAGGACACGGAGGTGGTGGGTGAGCGGGACGCCAAGGAGCGCAACAAGGCGGCCATGGTGTGCTCCCTGGAGAACCGGGACGAGTGCATGATGTGCGGCTCATAGATCCTTTCTGGTGGTCTGTGCAGTTATTGTCCTCATGGGAACATACACACTGTTGAGGCTTACACTTGCCCAGCCTTACACTGCATGAGGAGCTGTTCAGATCTGCTCAGCACTGCCTCTCGTCGTTTGGTACTGCTTCCTGCCCAGCGTATTGGGGTAGATtgtagatatttgtttttgtttacttgcATGGGTGGATGAAGTTTGTATTGGGATGTGAGTTGTGtggggaaacaaaatataaataaatgctctCGTTTGTGACTGTACACCAGGGTTCTTCAAAACGCGTCCTTAGGGGGCAAAGCACTTCTATTTTGGTCCCCAGCCGAGCACTGAAATGGTTAATTGAACCAAATTATCCCCTTTTCTTGGTGATGGGTGATTTTCAGAGATGTACCCTACAAAGCCTGCTGGGCTGTGACCCTCGGGGACTAGATTTGAAAGACCCCTGATGTACACTGTCCGTTTAATGCAGCCTCCCCTGATTTGTCGTCCCTGGGTTTGTGCACAGAAGTCAAATTAAACTGCATCCCAGTGACTTGTTCCGAGTTGAAACAGCTGGTTTAGCTCCAGTCTAAAGGTTGGTTTCACACTCAACCCAGTGTTAATAGTTTATGCTATCCAATAGTATTCCCAACCAGCACTGAGAACATAATGTTAAGATAGAAATAGTCAATACAGGCATGTCAGATTTTTCATGCCTGGGCTTTTAAGTAcgtttatatttttacttaaatacCTTAAAGTATGAATCATTTACCATTAtagtgacttttttttgtaacctCTGCTTATTAGCTTTTTCAATGCTTGTACTTCAGCTGTAAATAAACACTCCTCTAACTTAATATCTTCACTGTTTAGTACTAGAACGGCCGGCTTCAAACAGTTTACCTGAAGGCATTGCAGTCTCTCgacaatgtattttcttgtacaGACTGTTTTAATATCTTGGAAAGCTCCTACTTCTTCCTTTCCCTgtcagctttttgttttaaatggtgaAGGCTCATGTACAACTGTaaatcaatctgtaaagcaGATAACTTGTTAATATGTACAGGACAGTCAAATAAAAACCTTAACATTA

Function

symbol description
rrm1 Predicted to enable ATP binding activity and ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor. Predicted to be involved in deoxyribonucleotide biosynthetic process. Predicted to act upstream of or within DNA replication. Predicted to be located in cytoplasm. Predicted to be part of ribonucleoside-diphosphate reductase complex. Is expressed in several structures, including immature eye; nervous system; neural tube; presumptive telencephalon; and tail bud. Orthologous to human RRM1 (ribonucleotide reductase catalytic subunit M1).

NR:

description
PREDICTED: ribonucleoside-diphosphate reductase large subunit isoform X1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0006260 DNA replication biological_process
GO:0005971 ribonucleoside-diphosphate reductase complex cellular_component
GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor molecular_function
GO:0005524 ATP binding molecular_function

KEGG:

id description
K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016192 True 3697 mRNA 0.51 19 11741483 11749371

Neighbor

gene id symbol gene type direction distance location
AMCG00016193 NA coding upstream 106 11733878 ~ 11741377 (+)
AMCG00016190 LOC102214188,LOC103353587,LOC101465674 coding upstream 24443 11680800 ~ 11717040 (+)
AMCG00016186 NA coding upstream 98073 11627693 ~ 11643410 (+)
AMCG00016184 NA coding upstream 211124 11515756 ~ 11530359 (+)
AMCG00016180 NA coding upstream 351171 11389809 ~ 11390312 (+)
AMCG00016191 NA coding downstream 2147 11751518 ~ 11764647 (+)
AMCG00016198 NA coding downstream 32809 11782180 ~ 11791632 (+)
AMCG00016196 NA coding downstream 47317 11796688 ~ 11800796 (+)
AMCG00016197 pcyt1b,LOC107590340,LOC107721854 coding downstream 88301 11837672 ~ 11847864 (+)
AMCG00016205 NA coding downstream 307329 12056700 ~ 12109384 (+)
G11851 NA non-coding upstream 11257 11729600 ~ 11730226 (+)
G11850 sc6a7 non-coding upstream 14060 11726942 ~ 11727423 (+)
G11849 NA non-coding upstream 17882 11723197 ~ 11723601 (+)
G11848 NA non-coding upstream 18925 11722068 ~ 11722558 (+)
G11847 NA non-coding upstream 21075 11719779 ~ 11720408 (+)
G11905 NA non-coding downstream 67633 11817004 ~ 11819065 (+)
G11914 NA non-coding downstream 98914 11848285 ~ 11851621 (+)
G11953 NA non-coding downstream 278928 12028299 ~ 12029121 (+)
G11988 NA non-coding downstream 456977 12206348 ~ 12207474 (+)
G12009 NA non-coding downstream 512680 12262051 ~ 12265709 (+)
AMCG00016174 NA other upstream 783451 10844127 ~ 10958032 (+)
G11660 NA other upstream 2142327 9598815 ~ 9599156 (+)
AMCG00016159 ubl3,LOC107578048,LOC106604009 other upstream 2149834 9559464 ~ 9591649 (+)
G11545 NA other upstream 2515238 9223412 ~ 9226245 (+)
G11509 NA other upstream 2641447 9099420 ~ 9100036 (+)
G11921 NA other downstream 119454 11868825 ~ 11871735 (+)
AMCG00016202 NA other downstream 243601 11992972 ~ 12005952 (+)
AMCG00016213 NA other downstream 685765 12435136 ~ 12461265 (+)
AMCG00016221 NA other downstream 1028853 12778224 ~ 12786899 (+)
AMCG00016241 NA other downstream 1522213 13271584 ~ 13389636 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019711 rrm1 coding NC_007132.7 CM002905.2 30772043 ~ 30787414 (-)
grasscarp (Ctenopharyngodon idella) CI01000006_01778632_01788481 RIR1, RRM1 coding CI01000006 null 1778632 ~ 1788481 (+)