AMCG00016197 (pcyt1b,LOC107590340,LOC107721854)


Basic Information

Item Value
gene id AMCG00016197
gene name pcyt1b,LOC107590340,LOC107721854
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 11837672 ~ 11847864 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016197
ACTCTGCACACACTGGATCAATGGGTGAGAGAGCGGCgggagggagtgggggtggTATCAGCCCTTGCAGTCCTACCGGCAGGAATCACAACGCTTATCGTCCCCTAGGTAAACAGCAGTGACCTTTCGCTACTCTTGTCATATTTGGACGAGCCCACGACCAACTTGGCATGAACTTTGCACACTTTCCTGCTGTCAGCAGAGTCAGGCTGCTCTGACAGGCGAGCAGCACTCTCCTGACACTCCGCTGCTCCCACTGCGAGAGAGGCAGTGCCGGCTGACTGCAGCATCAGGGATGGTGGGCAGGAAACGCAGAGGAGAAGGCAAGAATGGCCTGGCACAGCACTACACGAAGGAACCACGCAAGACGCTGAGGGAACCTGCTGCATTCGCAGGAGAAACCAGCTGTCAGTGCAGGGCTCCTCATGAGAAACTAACTGTATCTCAGGCTCGGCGCGGCACTCCAGTGGACCGGCCTGTGAGAGTGTATGCTGATGGGATCTTTGACCTGTTCCACTCAGGCCATGCTAGGGCTCTCATGCAGGCCAAGAACCTGTTTCCTAATGGATACCTGATAGTAGGAGTGTGCAGTGATGAGTTGACCCACAAGTACAAGGGCTTCACGGTGATGACGGAGGATGAGCGCTACGAGGCCCTGAGGCACTGCCGCTATGTGGACGAGGTCGTCCGAGACGCTCCCTGGACTCTCACTCCGGAGTTCCTGGAGAAGCACAAGATTGACTTTGTTGCTCATGACGATATTCCTTACTCTTCTGCGGGCTCAGAAGACGTCTACAAGCACATTAAGGAAGCAGGCATGTTTGTTCCAACGCAGAGAACCGAAGGCATCTCCACTTCGGATATCATTACCAGAATCGTGCGGGATTACGATGTATACGCCCGGCGCAACCTCCAGAGAGGCTACACAGCCAAGGAGCTGAACGAAAAGAAGTATCGCCTGCAGAATCAGGTggacaaaatgaaagaaaaagtcaaGAACGTGGAGGAAAAATCTAAGCACTTTGTGTATAAAGTCGAGGAGAAAAGCCATGATCTCATTCAGAAGTGGGAGGAAAAATCCAGAGAGTTTATTGGTAACTTTCTGGAGCTTTTCGGCCCCGATGGCGCTTGGaagcagatgttCCAGGAGAGGAGCGGGCGCATGCTACAGGCCCTCTCCCCACGCCAGTCCCCCACGGGCAGCCCCACCCGGGAGCTGTCGCCCTCACGCTCCCCCTCGCCCACCTACCGCTGGCCCTTCAACAAAACTTCCCCCCCGTCCTCCCCCAAAGCCGCCTCGGCCTCCATCAGCAGCATGAGCGAGGGGGACGAGGACGAGAAGTAGCCGGGGGGGCGCGCGCCGCTCACCCTCTCTGTTCCTCGTGACGCAGTACTGTACGcacttggggggggggaggggggcaccCTGGCATCCGCTCTCCTCTCCACACCGGCAGTCTCTGGATGAAGTCTCCTAGCCCTCCAGATAAGTGTGCTGTAGAGAAGAACGTGGATTATATGGGACGTTGAAAGAGATTCGTAGGTTCAGGAGTACTAGTAAagaaatgtcttttaaaatactCACATGTATACACTTCTGACTTGAAGCACTTCATgctgcatataaatgtaattattattattattattattattattattattatttcatgaaCCATGATAAAAGACCAagtgtaataatgtaattgatatacaataatttattaaatagtAATCCTCTATTGGTTGCTCAGACAAACATTGTTGAAAGgcaatatattttcacttaCATTGATTGCACCCATGAGTTAAGAATTGTTCATGGATTTTCATGAACTTGTCAACAATTCAGTTAAAGTTGAGAATAAGTAAAATGCAAATTCATAACAAAATAACTTAttcttacattattttcaagtaTGACATCTAAAAACTGTATCTCGTGATTCTCAGTAACATTAATTTCACGCACAGATTAACATCATGTTTCCAAAGGTCTAAAAAACGATCTTTAATCCCCCTGGGAATACACAGAGCAATCGTGTGTAAGCCAATCATGAACAACCAGGAAATTAACCAATCTGTGTCAGTGCAAAAACCCCTGTTGGGAATATAGTTTAGGTCACATTAGACAAGAGCTACTAAGAGGCGGGTATGTAATTAATTCTGTAAGGATgtgtaattgtgattttaattatttattaaaaatggaaagcCAGTTCCCACTCTAATGCACAAGCTGTTGGGAATAAAACTCTCACCAGTTCACATCTCATGCACCTCTTCATTTTATCTTGaagtaatttattaatacaatattaatacagtattgCAGGGGGGCATAACTCTGCAGGTTTAATACCTCTCCTTAAATGATCAACAGCTTTAGATTCAAGATCAGGGTTCAGTTGGTCAAATTGATCAAATAGTTCAGTTCATTAACGGCTGAAGCAGAATGCCCACTAGAGGGTCCAGGGCCCCTGAGGATGGAGTTGTGCAGCCCTGCATTACACCTTTACTAGGACTAGGAGGGGTTATGCAATTACTAGATTACTAGATGAGAGCCTactgacaaaaaaacagacataaaatCTATCGTTTTTCTGCCTAGGCCTTGACTCTGAAATTGCAGAGTGCAACAGCACGGTTTCTAGCAGGAGTCAATGTAACGAGCTCCTAAAGTGACAGACCATCATTGTTCTCAGAGACCACATGATTCAATATGCCTAAACTGCACTCTGTATGAAGTCAATGTACTGAATGTTCTGACagaaacatttagattttttttttatatacgtATAATTAAAGCTgcttaatatgtaaataaataaacctgtacAAAACAA

Function

symbol description
pcyt1b Enables choline-phosphate cytidylyltransferase activity and identical protein binding activity. Involved in CDP-choline pathway. Located in endoplasmic reticulum.

NR:

description
choline-phosphate cytidylyltransferase B isoform X1

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K00968 PCYT1; choline-phosphate cytidylyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016197 True 2849 mRNA 0.46 8 11837672 11847864

Neighbor

gene id symbol gene type direction distance location
AMCG00016196 NA coding upstream 36876 11796688 ~ 11800796 (+)
AMCG00016198 NA coding upstream 46040 11782180 ~ 11791632 (+)
AMCG00016191 NA coding upstream 73025 11751518 ~ 11764647 (+)
AMCG00016192 rrm1,LOC107684690,LOC106920178,LOC103364515,LOC103136300 coding upstream 88301 11741483 ~ 11749371 (+)
AMCG00016193 NA coding upstream 96295 11733878 ~ 11741377 (+)
AMCG00016205 NA coding downstream 208836 12056700 ~ 12109384 (+)
AMCG00016206 NA coding downstream 325204 12173068 ~ 12205659 (+)
AMCG00016207 NA coding downstream 393779 12241643 ~ 12261142 (+)
AMCG00016215 NA coding downstream 538114 12385978 ~ 12397053 (+)
AMCG00016214 NA coding downstream 552965 12400829 ~ 12407292 (+)
G11905 NA non-coding upstream 18607 11817004 ~ 11819065 (+)
G11851 NA non-coding upstream 107446 11729600 ~ 11730226 (+)
G11850 sc6a7 non-coding upstream 110249 11726942 ~ 11727423 (+)
G11849 NA non-coding upstream 114071 11723197 ~ 11723601 (+)
G11848 NA non-coding upstream 115114 11722068 ~ 11722558 (+)
G11914 NA non-coding downstream 421 11848285 ~ 11851621 (+)
G11953 NA non-coding downstream 180435 12028299 ~ 12029121 (+)
G11988 NA non-coding downstream 358484 12206348 ~ 12207474 (+)
G12009 NA non-coding downstream 414187 12262051 ~ 12265709 (+)
G12032 NA non-coding downstream 475313 12323177 ~ 12328393 (+)
AMCG00016174 NA other upstream 879640 10844127 ~ 10958032 (+)
G11660 NA other upstream 2238516 9598815 ~ 9599156 (+)
AMCG00016159 ubl3,LOC107578048,LOC106604009 other upstream 2246023 9559464 ~ 9591649 (+)
G11545 NA other upstream 2611427 9223412 ~ 9226245 (+)
G11509 NA other upstream 2737636 9099420 ~ 9100036 (+)
G11921 NA other downstream 20961 11868825 ~ 11871735 (+)
AMCG00016202 NA other downstream 145108 11992972 ~ 12005952 (+)
AMCG00016213 NA other downstream 587272 12435136 ~ 12461265 (+)
AMCG00016221 NA other downstream 930360 12778224 ~ 12786899 (+)
AMCG00016241 NA other downstream 1423720 13271584 ~ 13389636 (+)

Expression


Co-expression Network