AMCG00016199 (pdk3,LOC106578452)


Basic Information

Item Value
gene id AMCG00016199
gene name pdk3,LOC106578452
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 11848284 ~ 11866869 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016199
GTGCGTTTCAACGCAATAATGTAACACAGACTCTGCCGGGAAACATCAGTATTGATCAaatttgtgattttatgttgtttttttagaaaacCATTAAAGCAGTGGCAGCCGGGAAGAGAGTGGATCTTCCAATGAGATCGCAAagggttgttttttgtatttattgtcacAGGTTTTTGCATTAACGCTACtgtatatgcatgtttttttattattattattattattattattaatttgaatccGAAATAAAGCAGATTCAGTTATGAGGCTGTTTAGGTTTCTCCTGAAGAACACCACTCCGAAACAGATTGAGTATTATTCGAGATTCTCGCCGTCTCCGCTGTCTATAAAGCAGTTTTTGGAATTCGGCAGGGACAATGCATGTGAGAAGACATCCTACATGTTCCTTCGGAAGGAGCTGGCAGTTCGCCTGGCCAACACCATGAGGGAGGTCAACCTGCTGCCAGACAACCTGCTGAGCCAGCCCTCGGTCAGGCTGGTACAGACCTGGTACATGCAGAGCTTTCTGGAGCTGCTAGAGTATGAGAACAGGAGGCCTGAGGACCCCCACGTGTTGGATGATTTCTTGGATGTTCTTATAAAGATTCGAAATCGACACAATGACGTGGTCCCTACAATGGCCCAGGGGGTGATTGAGTACAAGGAGAAGTTTGGCTTTGATCCCTTCATCAGCAGCAACATTCAGTACTTTCTGGACCGCTTCTACACGAACAGAATCTCCTTCAGGATGCTGATCAACCAGCACACCCTTCTGTTTGGCAATGACACGAATCCAGCACACCCCAAACACATAGGCAGCATTGACCCCACCTGTAATGTGGCAGAAGTTGTGAAAGATGCGTACGAGACTGCTAAGATGCTTTGTGAGCAGTACTACATGGTAGCCCCTGATCTGGAGATTGTAGAATTCAATGCAAAGGCCCCTAAAAAGCCCATTCAAGTAGTGTACGTGCCATCACACCTCTTCCACATGCTGTTCGAGCTCTTCAAGAATTCAATGAGGGCCACAGTGGAGCTGCACGAGGGCAGTAAGGAAGGCTACCCCCCTATCTGTGACAAAGGAGGAGGGGTCCCACTGAGGAAGATTGACCGTCTGTTTAACTACATGTACTCCACTGCGCCCAGACCCAGCCTGGAGCCGTCCAGGGCAGCCCCCCTGGCTGGCTTTGGCTATGGCCTGCCCATTTCCAGGCTGTACGCACGATACTTCCAAGGTGACCTGAAGCTGTACTCTATGGAGGGAGTGGGGACAGACGCTGTCATTTATCTAAAGGCTCTGTCCAGCGAATCCTTTGAGCGCCTCCCTGTGTTCAACAAGTCGGCGTGGCGGCATTACCAGACCAGCCCCGAGGCCGACGACTGGAGCAACCCGAGCAGTGAGCCTCGAGATGCCTCCAAGTACAAAGCCAACCGATAACTCCCCCGCCACAACGCCACCTGCATCCCCTCTCGCCGTAGAGACCGCCGGCCCGACTCCGGTCCCATGCAAATACGAAACGACAGTGATGACGGTTCTATTAATATCAGCATCCAGTGTCTTGTAATAGTCGACGTTTCCATTTTCAAGTAGTCCTCCACACGGCGAGAGACCGTCAGCATGTTGGTGTCAACATGTTTAGTATTTGAAATGGACTCTTCCCCTACttgtgtgagagaaaaaaaaaaaatacagacaagTACAGAGTAGCTTGTCAGTTGGGAAAAATTGTGCAACggcactttgttttgttgtgatcTTGTGCTTTTGCAAAAGATTAGAGAATTATCCTTTTTTGTAGTATTACAGATATGTgcgttttctgttttttattccaaaTCTCGTGTGCAGAAATCTTTTGGTATTTGTTCAGTCCTAGCTGAAGTGTTTGATTGCCTTTCtgaagcgcacacacacacgactcAGATTGCTGGAGGTATGAATGATTTTCGTTGGATGATTTTTGAAGAATGATATTCCTTGGATTTGAGAAGGCTTTTCACTGTAGAATATTATAGCTCACTGTGGTCGATTTGGTAAATATGAGGGTCTTTGGGGGGCATGGAAAGTTCTCCTgctgtaaaacaatgaaaagcacCTTATGTTTTGACAATTTGAaagaatatttataatatacacatgtatgtatatgggTATTTATAGAATTGCTGTAATGCTACAGCAGTTGGACATTTTTCTTGCActgcttttatttgttcatttgtggGATGTTTTAGAGTCTTCATGTTAAAGAGAATATTGCTATTATTTGATGATTGCACAAGAAAACGCCTCGCAGACGGCTGCTTGCTATAATTGTAGGGGTGGGAACTCCAGTCTCTTCCATTGGTGTTCACTGCAAAACATCTGAGCAATCGATGCATCTTACTTGAGCTGAGAGGAAGGGAATTTACATGGAGGAATCGGATGAAGACTTTTGAGCAGAGAATAAGTCTTCCACTGCCACTGTTATCATGCACCTTATCTCAAGGGTGGTATCTGTAGGGGACGTGTAACttgactattttattttcatttttattttttaaaggagcTGCAAAATGCTTTAATAAACCCTTTTGAAACTGTAATGAAAGGGAGGTTTAGTTTTTGAGATTCACCCAGTATGTTGGGTTCAGATTGAGGAGGAAGCTTGAGGACCGAGCTGGTAAAGCAGGGTTATTACAGGTCGCTGTTCATGATGCACAAGGTCTTGGCTTCCCAGAGGAAGAGGTGTCCCTACAGGTTGATGACATCATTATCCTTTCCTCCTGGCCCATAAAGAGTACAGTGTGATTGACCCTCTGAGTTCATCCCTATCAAATCTACTGAATTGCTGCACAGTTGTTTGtgaattgcatttgaaatagtGCGTGCAGTTTAGTTTTGAGGAAGCTATGAAGTTTGCATTCAGTTGTGGTCTGATCTTCTAAAAACTATGGTACAAAGTTAACTATGAATGACTTGATGTGCTCTTCATATAAAGCTTGTATTTTGAAGTCTCCTCAACAAAACTCTGgatagatacattttaaattgctgcagcctgcatttgtatgtttttctatATTCAGCAAGCCTGCTAGTATTAATATCTAAAACAGCTGTCTGATTGGCttagtatataatatattattcttaGCAGTGGTTCAGACATAAATTCTCCAATCAAGAGTTGGATTAATACCTTATTATTAACGATAATAATCATGTATTTTCCACCTTAGTACCTTTACCTGCGGTTATCATCACACATCACAACCAAAAACTCCCCGATTTTAAAATTTTCATAACTGACTGAAGCTGagtgatttgattgttttgtttggctttttttgttaatttattaatttttggttttaatataatatgaattCTTCCAGGCGGAAGGGTGGGATAAAACGGTGTGTTATTGCTTGATCGGCATCAATGGAAATTGTAGTAATTTCTGTATATAAACAACCAAATGATAATCTATCCCCTGTATCATATTTTAACctgtataaaatgtgtttggcaTTACTTCGGTGTTATTCAAGCATGCTGCTGCCATTTGTTTTAACATGCATTGTCCCTTTTGTCTCCCACTGAATTGCAGTTAATAGGGTAAATTACATCCGCACATGATCTCTCCGAATGGTGGGGTTGTCCTGTACTTTTCCCATGGCGTCGGGGAACAGTAACGCATCCACACACTAGCCCTTCAAGTTCATCATAAAATGCATGTACAACTAATAGAAACTGCTTAGTGACAGTTGTTTTACATATGTGTCTTCCGTGTTCTCATGACCAGTGCATCCGGTTCTACATTGTGAGTAGATTAAATGTGTCTTAGTCACCATAAGAActacttttgttttgcagaaggaaaaaaatgactGAGAAAGGtgctgatgatgattatgaatTAAAAGTGATGTTAGATGTTGTAACATCAGTCTGCAGTCTGTTTGGACTCTCACTGTCCTCACACCAAGACAAGGACCTGTGCATTATTTTGCCCCACGTCTCTGTATCATTCCCGGTACAGATCGGGGCGTGCGGTCCAGGGCAGTGGGATTTAGTGGATGTCTGAGACCCGTGCTGCGGACATCGTTCCTGTACTGCGCAGCTGTCTTAAACTTCAAAGAAGTAACAGGAGATCAGTGTTATAGTAACATTGTACAGGTACAGCAGAGTGCCTCATGCACATCGACCAatcattttattcagtttgaaAGCCTTCGTGCTTGTTTGAAGTTATTGCAAGCGATGCGTTGAGAAGTGTTCCGATCTGGGATTCAGATGTCTTCAACCAATCCCTAGGCTcaggaaaaatatgaaattatattatttatatatatatatatatatatatatatatataccctacTTATTTTGTTATAGCAGCTCCTCGGGAAGTGAGATGTATAGGGTTTATTTGGGGGCTGGGAGAGGGTGTATTATAATGggtttgttcattttcatgGTTTGTCACCATCACACAGCATTTATAATCTGTAACTGTGGAGCAGAGatgtctgttttaattgtgatttgccaaaataaaaagagcTTTGTCATGGCAACAATACTGATTTGACAGAACATGTCCACTTTACCCgagatgataaaaataaaaaataaaataaaactgaag

Function

symbol description
pdk3 Enables ATP binding activity; protein serine/threonine kinase activity; and pyruvate dehydrogenase (acetyl-transferring) kinase activity. Involved in several processes, including hypoxia-inducible factor-1alpha signaling pathway; peroxisome proliferator activated receptor signaling pathway; and regulation of acetyl-CoA biosynthetic process from pyruvate. Located in mitochondrion and nucleolus. Implicated in Charcot-Marie-Tooth disease X-linked dominant 6.

NR:

description
pyruvate dehydrogenase kinase, isozyme 3 isoform X1

GO:

id name namespace
GO:0005524 ATP binding molecular_function

KEGG:

id description
K00898 PDK2_3_4; pyruvate dehydrogenase kinase 2/3/4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016199 True 4640 mRNA 0.42 11 11848284 11866869

Neighbor

gene id symbol gene type direction distance location
AMCG00016201 NA coding downstream 11863 11818088 ~ 11836421 (-)
AMCG00016195 LOC106953351,LOC103475760,LOC103145618,LOC106922176,LOC107098229 coding downstream 118487 11719415 ~ 11729797 (-)
AMCG00016187 rhog,LOC106613190,LOC107749931,LOC107667433 coding downstream 185449 11647731 ~ 11662835 (-)
AMCG00016188 NA coding downstream 225225 11604817 ~ 11623059 (-)
AMCG00016189 LOC107685497,LOC106603565 coding downstream 257187 11583814 ~ 11591097 (-)
AMCG00016200 NA coding upstream 1918 11868787 ~ 11886193 (-)
AMCG00016204 LOC104943497 coding upstream 39207 11906076 ~ 11943652 (-)
AMCG00016208 sacs,LOC106612984 coding upstream 341279 12208148 ~ 12236522 (-)
AMCG00016210 LOC106567911,LOC102798362,LOC104951736,LOC105923239,LOC107101883 coding upstream 397405 12264274 ~ 12296060 (-)
AMCG00016209 NA coding upstream 429984 12296853 ~ 12320656 (-)
G11865 NA non-coding downstream 109685 11738345 ~ 11738599 (-)
G11858 LOC106904821 non-coding downstream 130867 11701591 ~ 11717417 (-)
G11814 NA non-coding downstream 364491 11483562 ~ 11483793 (-)
G11807 NA non-coding downstream 447866 11400207 ~ 11400418 (-)
G11805 NA non-coding downstream 460159 11387731 ~ 11388125 (-)
G11996 NA non-coding upstream 371916 12238785 ~ 12239014 (-)
G12041 NA non-coding upstream 486291 12353160 ~ 12353381 (-)
G12046 NA non-coding upstream 487806 12354675 ~ 12355364 (-)
G12058 NA non-coding upstream 520929 12387798 ~ 12391408 (-)
G12096 NA non-coding upstream 771624 12638493 ~ 12638698 (-)
AMCG00016194 NA other downstream 66737 11766152 ~ 11781547 (-)
AMCG00016176 NA other downstream 1000473 10834412 ~ 10847811 (-)
AMCG00016134 NA other downstream 3020524 8823545 ~ 8827760 (-)
G11326 NA other downstream 3653852 8191546 ~ 8194432 (-)
AMCG00016119 NA other downstream 3724251 8119221 ~ 8124033 (-)
AMCG00016211 NA other upstream 456292 12323161 ~ 12329033 (-)
AMCG00016226 NA other upstream 983009 12849878 ~ 12870560 (-)
AMCG00016246 prdm15,LOC108413920,LOC102786849 other upstream 1676479 13543348 ~ 13559184 (-)
AMCG00016281 NA other upstream 2553487 14420356 ~ 14427290 (-)
AMCG00016293 NA other upstream 2918329 14785198 ~ 14791969 (-)

Expression


Co-expression Network