AMCG00016200


Basic Information

Item Value
gene id AMCG00016200
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 11868787 ~ 11886193 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016200
ATGGACGGACTGGGAAATGTCACCGACCCCAGCTGCACCCAGCAGCCCCCGCTGGCTATCGACATCATTATCCCTGGGACAGCCTGCTCCGTGCCCTGCTCCGTGCCCTGCCCCTGCTCCGTGCCCTGCTCCGTGCCCTGCTCCGTGCCCTGCCCCTGCTCTGTGCCCTGCTCCGTGCCCTGCTCTGTGCCCTGCTCCATTCTGCCTGTCATTCTGCCCACAGATCTGGATATCTTTGGGATCATTCTGTATGCAGTCCTTACCCTGATGGCAGTGCTGTCTGTGCTCATATACATGGAAGAAGCCATTTATATCTATAAAACAGTTCCCTCTCCTAAGAAATCGGCCATTATGTGGGTTAATGGTGCAGCACCTGTCATCGCAGTAACATCTTGCTGTGGGATGTGGATCCCGCGTGCCACCATGTTTACAGACTTCACAGCTGCTACGTACTTTGCCATTGTCATCTACAAGTTCCTGGTGCTCATGATCGAGGAGTGCGGAGGGGATGAGGGCTTTTTAAAGCGCTGTGGCCAAAACCGCCTGAAGATCAGTACGgggccctgctgctgctgctgcctgtgCTTACCGTTCGTTGGGATCTCAAGACGAACCCTGTTTCTGCTGAAGGCAGGATCTTTTCAGTTTGCTTTCCTGAAAACAGTCTTCACCATTCTCTCCATAGTACTCTGGACCAACGGGAACTTTGACCTCGCTAATCTATCTATGAATAGTTCTGCTATATGGATAAATCCTTTTGTTGGGATCCTCACTATCATCGCGCTTTGGCCCGTCTCCATGGTGTTTAAGCATGTCCAAGGGCTGCTACGCAGTCAGAAGATTATCCCCAAGTTTGCCATGTATCAGtTGGTGCTGATCCTTAGCCAGCTTCAGTCGGCCATCATTAACATCCTTGCGATGGCAGGAACAATAGCCTGCGCTCCTCCCTTTTCCTCTGTGGCTCGGGGCTCCTTCATGAACCAGCAGCTGTTAATTATGGAGATGTTCATCGTCACGCTGGTCACCAGGATGCTGTACAGGAGACGGTACAAGCCCCTGGACGACTTGGACAAGCACGCCGAGGACAACGAGGGCAATGCCAAGATCCTGCTGCAGTCCGAGTGTGGCGAGGACGGCGTGCAGACGGCTTAACTGTGGGCCTCTGCAAGGAGCCGCACCATAGAGGAGACTGCGCGCACACTGGTGTTACACTGTTCCTGCGTTTGGTGTTAGGACCTGTTCAGTCTGCCACAGAGTTGGAGACGAGCAACATCTGCAGAAAAGAACCTCAATAAGTTCACTTTTTCTGACTGGCTGTATTCTGCCTGTGAGTTGATGTTAtgaagttgtgtgtgtattattttttaatacgtTAAGTACAAAAGCCCAGGAAGTGAACATGTTTTAGGAATTTGCCATGGCTgactacaaaaacatttaacctATATAGGCTGTATTAAGCGAATACAATACAgggttttctgttattttatgtagAATACGTTCTTCTCCTATATTCCGATACAACATAgaagattgcatttttttttcttgtttatgtttatCATGTTCAGTTTTTTCCTATCTCCTATGCTCCTATCTATGCTGGCATCAAACCATTTCCCATATTTGGAtatggacattttaaaatatatttataaaacaccaTTTAGTTATTAAGGCTGTATCAAATATTGTATCTACTCATTAATAGAGTTCACTGTGCTGCAATGAATCCAAGAAATTATACTTGGTcaaattgttaaatgtaattttgtcaGGTTTCTAGCGTATGCTGGCACTGGGTTAATCTCAGTAACATTGTATTGGAGAACAAAATACAGTTCTCTATTATAATGGAcataatgtctgtttttaaaacctcAAATATAAACTCTTTTCATATGTTGGAATGGaaggtgtgtgcgtgtgtgtgcatttttggAAGTTGCTGGGTAGAGAGTACAAGAGTAGTAGTCTATATAAAAGTGATACACAgatataaagtatttttataatgCCAGTTTGGTGTACAGGTGCAATTATGACTTGTGTGTACTAACAGAAAAAATGGAActagtaaaaatatatttttaaaaccaaacattCTTGCTTGTTTAGTGCGTTTATTTGATAACATAATGTCAACATACCTTTTTGAGCCAATAAAGACAGAAGCGTTGGGACAGAACAATTGGCACTGACCTTATTTGTACTACATGTGGAGGaccttttttaataaatgtaaaacacctattcaggttttgttttttttatatataaataataatatgtttgtaAACAGTAGGATGTATAAAGTGATATAGATCTTACCGAGTTAAACACAGATAACACATTTGCATCCCTTGTTTTGCTAAAGATGTtgattttctcatttttttaatggactCGTAAAATAGAGAGTGATGTTgataaaactacacaactgctgaggtaataaaataagtgaaaataaatacatttaaaaaatcaacaagA

Function

GO: NA

KEGG:

id description
K14360 OSTALPHA, OSTA, SLC51A1; organic solute transporter subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016200 True 2499 mRNA 0.43 9 11868787 11886193

Neighbor

gene id symbol gene type direction distance location
AMCG00016199 pdk3,LOC106578452 coding downstream 1918 11848284 ~ 11866869 (-)
AMCG00016201 NA coding downstream 32366 11818088 ~ 11836421 (-)
AMCG00016195 LOC106953351,LOC103475760,LOC103145618,LOC106922176,LOC107098229 coding downstream 138990 11719415 ~ 11729797 (-)
AMCG00016187 rhog,LOC106613190,LOC107749931,LOC107667433 coding downstream 205952 11647731 ~ 11662835 (-)
AMCG00016188 NA coding downstream 245728 11604817 ~ 11623059 (-)
AMCG00016204 LOC104943497 coding upstream 19883 11906076 ~ 11943652 (-)
AMCG00016208 sacs,LOC106612984 coding upstream 321955 12208148 ~ 12236522 (-)
AMCG00016210 LOC106567911,LOC102798362,LOC104951736,LOC105923239,LOC107101883 coding upstream 378081 12264274 ~ 12296060 (-)
AMCG00016209 NA coding upstream 410660 12296853 ~ 12320656 (-)
AMCG00016212 NA coding upstream 474382 12360575 ~ 12376528 (-)
G11865 NA non-coding downstream 130188 11738345 ~ 11738599 (-)
G11858 LOC106904821 non-coding downstream 151370 11701591 ~ 11717417 (-)
G11814 NA non-coding downstream 384994 11483562 ~ 11483793 (-)
G11807 NA non-coding downstream 468369 11400207 ~ 11400418 (-)
G11805 NA non-coding downstream 480662 11387731 ~ 11388125 (-)
G11996 NA non-coding upstream 352592 12238785 ~ 12239014 (-)
G12041 NA non-coding upstream 466967 12353160 ~ 12353381 (-)
G12046 NA non-coding upstream 468482 12354675 ~ 12355364 (-)
G12058 NA non-coding upstream 501605 12387798 ~ 12391408 (-)
G12096 NA non-coding upstream 752300 12638493 ~ 12638698 (-)
AMCG00016194 NA other downstream 87240 11766152 ~ 11781547 (-)
AMCG00016176 NA other downstream 1020976 10834412 ~ 10847811 (-)
AMCG00016134 NA other downstream 3041027 8823545 ~ 8827760 (-)
G11326 NA other downstream 3674355 8191546 ~ 8194432 (-)
AMCG00016119 NA other downstream 3744754 8119221 ~ 8124033 (-)
AMCG00016211 NA other upstream 436968 12323161 ~ 12329033 (-)
AMCG00016226 NA other upstream 963685 12849878 ~ 12870560 (-)
AMCG00016246 prdm15,LOC108413920,LOC102786849 other upstream 1657155 13543348 ~ 13559184 (-)
AMCG00016281 NA other upstream 2534163 14420356 ~ 14427290 (-)
AMCG00016293 NA other upstream 2899005 14785198 ~ 14791969 (-)

Expression


Co-expression Network