AMCG00016202


Basic Information

Item Value
gene id AMCG00016202
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 11992972 ~ 12005952 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016202
CGCTGCCTGCGCACTGCGCGCTGCATGGGAGGCTCAGTGAAGAGCCCGGACCGGCGCAGGAGTGCAACATTTCACTGCGAGCTCTGCAGGAGGAACACCTGTTTCAATCCAGCCCAGCGACAagaagaaggggggaaaaaagaagaagaattaggaaaaaaagcacaagcaaaaGCAGCAACAGAGCACTCCTGCGTCTTCTCGTGTGCCGGTGGATCGCCTTACATTCACTGTACCTGGACACCTCTGCTCATCTCACCGCGCTTTCGGATATTACCTCCTGCACATCACAGAAGATCAAAGTTTTATTGCGGGATTTTGTCTGTGGCAACACTGTGCGATCTATAAAAACAACCTATAtgttatacatatacacatttgcTTCCAGCATTCATGCTGATGCATGCAGTCTATAATAGAGTAAAAACAGCGCATGCCTTTTTGGAGGCAGAATCCATAATTCTGACGTAGCCTGTACATCTTAAAATTCCCATAACGTCGGCTTTTTTTAAGTTGGCATGGTCATTCCTACCTTAACCCAAATGGAGAAGCTACGgatttttattcttaaaatagCTGGATGGGCTGAAGACCATATTACCTGTTAAGAGCTTGGGGATATAccgtatacatttaaattatgccCGTGTGTGAGTATAAAGTGGTGCTTTCTTAGACTAACAGTGCTTTGACCTTGAACCTGTACCAGTGCAAACAAAATCTTacttttatgtgtgtgtttcatggATTAATGGGAGACCAGCTTCATCAGTAACTGCAACAGGGAGGGAGTGGTATAAAGGTCTCTTGGGTTGAcaccattattattgttgtttattcgGGCTCTATAATAAAAGCAGAATCTCCTGATGGCTCCTTTAGGGGAAGTTGGGAACTATTTCGGTGCTCAGGATGCGAGTCCATTTGGGAATGTGCCGGTCCTGCCGGCGGATAACCCGGTTTTGTTAAGTGAGCACCTGGCCCAGGCGGAGGCTGGGGGTCTGCCAAAGGGGGCTGCAGTTACGGACTTGAACCATTTAAAGGGGATTCTCAGAAGGAGGCAGCTGTACTGCAGGACTGGATTTCACTTAGAGATTTTCCCCAATGGTACCATCCAGGGAACGAGGCAAGACCACAGTCGATTCGGTGCTGGGGATGTGGCGTGTCACCTTGTGCAATAGCGCACAACTTCAGCAGGGCACCGCTTTCAAGTGGCCCTCAATGGAGGTGCGCTGCGACAAGCACGTAACTGTCCAAGATCCCGGGCGGGCTGCCGCTGGTCTAAGGCGGTGTCGCATGCAGGCAGAGCGGGCAGATCTGCGGGAGCTGGCCGTGCGGCGGGTCGTGCCTGCTGGAGCAGGTATACTGGAGTTTATAAGCATAGCTGTGGGGTTCGTCAGCATTCGTGGAGTGGATAGTGGACTCTACCTCGGGATGAATGAGAAGGGGGAGCTGTATGGGTCGGACAAGCTGACACAGGAGTGTATATTCAAAGAGACGTTTGAGGAGAACTGGTACAACACCTACTCATCCAAGCTGTACACCCACACGGACACTGGACGGCCGTACTATGTGGCATTGAATAAAGACGGGACTCCAAGAGAAGGGACTAGGACTAAAAAGCATCAGagattaacacattttttaccAAGACCTGTGGACCCTGACAAAGTACCTGAGCTTTACAAGGATATTTTAAGCCAAAGTtgataaaaacatacttttttgtGTGGTTGAGCCcttaaaaagaggaaaaacaataccaactaaataaaaaatgataaaaaaactacaaaaaaacaaaaaacaaaaaacagaacagagacaaaacaaaaccactatAGAGATTTTGTGCGGTTGGTTCTTATTGATTAGCTGTGTCATCACGTCAGCTCCACTGTTGCCAAACTTTGTCGCATGCATAATGTATGATGGAGGCTTGGATGGATCATGCTGATTTTTGTTCTGCACTTAAAACAGTCTGTCCTGTTAGAGGAGAGCCAACCTCGCCCACTCGCTTGATTTGTTACAAGAGGCAACGCAAGACCAGAGAAGACACGGAAAGATACACCTGACCTggagagacagaaggagagagtgagagaaaatgagagaaaaggagagagagagagaaagagagatgtgGCCTGATGCATGCCAAGAGATGGACACGCTTTTAAGTTTTTGATCAGTTGAACTTCATCTTGTATCAGCATAGCTGCCATAACTTTTACTCATTGGGATTCTGGCTGGTGGCCTGCTCAAACCTATGCTGTATGAACAATGGCATGTAGGAtgcagtcttaaaaaaaaaaaaagcaaaaaaaaaaagcaagagacATTTTCTGTTAACACCCCAGTGGTGCTAGTCCATGGAGCTTAAAGCAAAGACCtcttagtaaaataaaaaaaaagaacgaaAAAGAAACCTTaaatttatttatagaaaactTTCAAAGgcaacattatatttattttatatatttatttattatatagagtttatttttaatgaaatatgtataGACCAACATAGGCGTTCTCGGAAAGCTTTAGAATCTGTAGGCATGTATTGGCGGAGGACACTAGGAGACTATGGACATTCATGCAAAAGACAGATATTCTAGTGACCCTTTATTGTTCTGAAGGTGACAATCTATTTTTTGCCcatattattgtaataatatgcACACCACTCATGACACACGAGTTTCCACTCTTCTGACTGCTTGTTTCATAGCTTTCCCCCTGAGGATTAAAGAAAAAGCTGGGTCtgatgatttgtattttgtgtcttttgtattttcttgtctACTGGTG
>TU14762
ACCCACCTAAAGAGGTATTCTACAGTACCCTGACTATCTAGCATGCTGGGTGACACATCTTCTGCTTTCTTTTATCAGGTATACTGGAGTTTATAAGCATAGCTGTGGGGTTCGTCAGCATTCGTGGAGTGGATAGTGGACTCTACCTCGGGATGAATGAGAAGGGGGAGCTGTATGGGTCGGACAAGCTGACACAGGAGTGTATATTCAAAGAGACGTTTGAGGAGAACTGGTACAACACCTACTCATCCAAGCTGTACACCCACACGGACACTGGACGGCCGTACTATGTGGCATTGAATAAAGACGGGACTCCAAGAGAAGGGACTAGGACTAAAAAGCATCAGagattaacacattttttaccAAGACCTGTGGACCCTGACAAAGTACCTGAGCTTTACAAGGATATTTTAAGCCAAAGTtgataaaaacatacttttttgtGTGGTTGAGCCcttaaaaagaggaaaaacaataccaactaaataaaaaatgataaaaaaactacaaaaaaacaaaaaacaaaaaacagaacagagacaaaacaaaaccactatAGAGATTTTGTGCGGTTGGTTCTTATTGATTAGCTGTGTCATCACGTCAGCTCCACTGTTGCCAAACTTTGTCGCATGCATAATGTATGATGGAGGCTTGGATGGATCATGCTGATTTTTGTTCTGCACTTAAAACAGTCTGTCCTGTTAGAGGAGAGCCAACCTCGCCCACTCGCTTGATTTGTTACAAGAGGCAACGCAAGACCAGAGAAGACACGGAAAGATACACCTGACCTggagagacagaaggagagagtgagagaaaatgagagaaaaggagagagagagagaaagagagatgtgGCCTGATGCATGCCAAGAGATGGACACGCTTTTAAGTTTTTGATCAGTTGAACTTCATCTTGTATCAGCATAGCTGCCATAACTTTTACTCATTGGGATTCTGGCTGGTGGCCTGCTCAAACCTATGCTGTATGAACAATGGCATGTAGGAtgcagtcttaaaaaaaaaaaaagcaaaaaaaaaaagcaagagacATTTTCTGTTAACACCCCAGTGGTGCTAGTCCATGGAGCTTAAAGCAAAGACCtcttagtaaaataaaaaaaaagaacgaaAAAGAAACCTTaaatttatttatagaaaactTTCAAAGgcaacattatatttattttatatatttatttattatatagagtttatttttaatgaaatatgtataGACCAACATAGGCGTTCTCGGAAAGCTTTAGAATCTGTAGGCATGTATTGGCGGAGGACACTAGGAGACTATGGACATTCATGCAAAAGACAGATATTCTAGTGACCCTTTATTGTTCTGAAGGTGACAATCTATTTTTTGCCcatattattgtaataatatgcACACCACTCATGACACACGAGTTTCCACTCTTCTGACTGCTTGTTTCATAGCTTTCCCCCTGAGGATTAAAGAAAAAGCTGG

Function

GO:

id name namespace
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0005104 fibroblast growth factor receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016202 True 2820 mRNA 0.44 4 11992972 12005952
TU14762 False 1489 lncRNA 0.49 2 12000468 12005903

Neighbor

gene id symbol gene type direction distance location
AMCG00016197 pcyt1b,LOC107590340,LOC107721854 coding upstream 145108 11837672 ~ 11847864 (+)
AMCG00016196 NA coding upstream 192176 11796688 ~ 11800796 (+)
AMCG00016198 NA coding upstream 201340 11782180 ~ 11791632 (+)
AMCG00016191 NA coding upstream 228325 11751518 ~ 11764647 (+)
AMCG00016192 rrm1,LOC107684690,LOC106920178,LOC103364515,LOC103136300 coding upstream 243601 11741483 ~ 11749371 (+)
AMCG00016205 NA coding downstream 50748 12056700 ~ 12109384 (+)
AMCG00016206 NA coding downstream 167116 12173068 ~ 12205659 (+)
AMCG00016207 NA coding downstream 235691 12241643 ~ 12261142 (+)
AMCG00016215 NA coding downstream 380026 12385978 ~ 12397053 (+)
AMCG00016214 NA coding downstream 394877 12400829 ~ 12407292 (+)
G11914 NA non-coding upstream 141351 11848285 ~ 11851621 (+)
G11905 NA non-coding upstream 173907 11817004 ~ 11819065 (+)
G11851 NA non-coding upstream 262746 11729600 ~ 11730226 (+)
G11850 sc6a7 non-coding upstream 265549 11726942 ~ 11727423 (+)
G11849 NA non-coding upstream 269371 11723197 ~ 11723601 (+)
G11953 NA non-coding downstream 22347 12028299 ~ 12029121 (+)
G11988 NA non-coding downstream 200396 12206348 ~ 12207474 (+)
G12009 NA non-coding downstream 256099 12262051 ~ 12265709 (+)
G12032 NA non-coding downstream 317225 12323177 ~ 12328393 (+)
G12036 NA non-coding downstream 326184 12332136 ~ 12333112 (+)
G11921 NA other upstream 121237 11868825 ~ 11871735 (+)
AMCG00016174 NA other upstream 1034940 10844127 ~ 10958032 (+)
G11660 NA other upstream 2393816 9598815 ~ 9599156 (+)
AMCG00016159 ubl3,LOC107578048,LOC106604009 other upstream 2401323 9559464 ~ 9591649 (+)
G11545 NA other upstream 2766727 9223412 ~ 9226245 (+)
AMCG00016213 NA other downstream 429184 12435136 ~ 12461265 (+)
AMCG00016221 NA other downstream 772272 12778224 ~ 12786899 (+)
AMCG00016241 NA other downstream 1265632 13271584 ~ 13389636 (+)
G12348 NA other downstream 1615927 13621879 ~ 13627711 (+)
G12349 NA other downstream 1625333 13631285 ~ 13631797 (+)

Expression


Co-expression Network