AMCG00016203 (zdhhc20,LOC108438268,LOC106578454,LOC108256609)


Basic Information

Item Value
gene id AMCG00016203
gene name zdhhc20,LOC108438268,LOC106578454,LOC108256609
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 11832428 ~ 11947322 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016203
gtTTGGGAAGCCTTGGTTCATAGCACAAGCTCTTGACTGTTAGAAAAAGCACTGCGTCTTCACTCAGACCTACCAAAGCGATCAATTACCATCTCAGTCGTTCAGTGTACGCACACCGAAGTACGTATTACAAGCAGTTCAGTGCTGCCATTGCCTGCCCTAGAGCTGCTCTAAGGAGCGATCTTTGTCTCTCATTAAGGAGTGGATGCTCTGACGTCAGGCGTGACGCTTCCTTCTGCGGGCTGGGATTAAAGATGGCGCCTTCTCATGTCCTGAGGTGCTGTCAACGGGTTTTAGCCTGGATTCCTGTGGTTTTTATCGCCCTGGTCGTGTGCTGGTCCTACTATGCGTACGTCGTGGAGCTGTGCATCTttaCAATCCAGAACACTGGTGAAAAAATTGTCTACATGGTGATATTCCACCTGTCCTTCGTCATGTTTGTGTGGTCGTACTGGAAAACCATTTTCACAAAGCCAGACAGCCCATCCAAAGAGTTCTGCTTGCCCAAAGCAGATAAAGAACAGTACGAAAGAGAGGAGAGACCAGAATCGCAACAGGAAATCCTCAAAAGAGTGGCTCGCGATTTACCTCTGTACACTAGGACTGGGACTGGAGCTGTACGGTACTGTGACCGCTGTCAAATCATTAAACCTGACAGGTGTCACCATTGCTCGGCTTGTGACATgtgtgttttgaaaatggatcaTCACTGTCCCTGGGTGAATAACTGCGTTGGATTTTCAAACTATAAATTCTTTATCCTGTTTCTGGCCTATTCACTGCTGTACTGCTTGTTCATAGCTTCTACAGTGCTACAGTATTTCATCAAATTCTGGACAAATGATCTTCCAGACACTCACGCCAAATTCCATgtcttgtttctcttttttgtggCTGCAATGTTCTTCATTAGTATACTCTCGCTCTTCAGCTACCACCTGTGGCTCGTTGGGAAAAATCGATCTACTATAGAGGCGTTCCGAGCTCCTGTCTTTAGAAACGGCCCTGACAAAAATGGATTTTCGCTGGGATTTTGCAAGAATATCAAGCAGGTGTTTGGAGATGAAAAGAAATTCTGGATGGTGCCCATTTTTACAAGTTTGGGTGATGGATCCACGTTCCCCACGCGTCTGGTGAATATTGACATCGAGCAGCCAGCTGTAGAGAGCCAACCGGAATGTGTTAAAAGcatTATTGATGGTCAGACCCCAAGACCTCTGAGCGAATCCCAGAATCGCCTTCTGGGGAACGACCAGCACTTCACAGAGGACGGCCTGGATGCCGCCAACCATAAAATAGAGCTCTCCAGAGTGAAGCTGGAGTTTGTGAAGATTTCCTTCCTGCCCTCTGAAGAAACGCTTCACAGATGGGTAACGAGTCGGCCTGACTGAATAGAGCTATCGAGACTGATGCCTTAAACACAATCCATGGACATCGATGTTACATTAGCGatcatgactttttttttcacatcccTCTTATTTAAGATCTAAACACTCATTTGcaattttaaagtattaataatGAGTTTTCTCAAAGTGTTTTGTCCTCCTTTGGGATAATAACCCTGCAATGCCAAGCCAAAAATATTCCTATTTTGCACTAGGCCATAGATTTATtggtctctcacacacatttatgtaggcctatttgTGTTTCCCAGTGTTCCTGTAGGAGATGTCATTGATCAGTACACTAAGCAACCATGGTCCAATGCTCAGGTTTTTAACATGAAACTGATTGGTGTCCCCCTGGTAAACGATGGGTATCGAGCCTATATATTGGATCTGGTGCTACAGCTGTAAATGGGAGTAACATATTTGCAGGTTTTTATATATCAATTTTATatagtgttgtttttacagtaaGAGGGGAGATAAGAGGCCAAGTGTTTCTGAATTGTCTGTAGcttctgatttttaaattgtagaccACAGACTAATGAAGGAATATTTATTGTACCCATTAAGAATTGAGGGAACAGATTTTATTAAGAGACATTGAACAGATTGCCGCACAAAAGAGCTTTTTGACTTTAAACCCAACTAGCGGTGAGTCTTTGAATTTGCCGGTTTCATTTGGTTACAGTACTGATGTACATTCACCACattgatttaacaaaaatagTTAATGACTAAGCCCATTTCATTAAGATAGCAGTTAAATTTTCCTGCcttatttaaatctgtttggttttaaactggtaaaacaaaaataatcagacTGACTAAAGTCCTGCActagaatacaaaatgtatacaacacCATCtcggtagttttttttttttttttctttaaagcagtTTTGTGCCTTCAGTTTACATGGATAGTTGCGTTTAAATCCATAGGAAAAAGTATTCATTATGGATGAATGAAGGTTATGGTCGACCTTTGCTTTGGCTGCTGCCCACGGTCTCCCTGCAGTTTGTCATTGTCCACTAGTGGGCGCTGAACACTCGTGAACAGATTTCCTGATGAAAGTTGCTAGGGATGGGTCGAAGAACACTAAACGCTGAAAATAAACTAGCCTTTGGTTCAAGGCAGGTCCGAACGATCTTAAAAACACCGGTGTTATTTCAGTGAAGTCGATTACGGAGATCCAACAGCTGTACTTTTAGGGACCAGCTGCATTGTGGAAACTTGTGGGTATTTATGTTAAGATGAAAATGCTGTTTACATCCATGGTAATGTTACTTGTAATGCTGTTTTGGGATTTTAGTGGcctactgtaaaaaaaaaaaataataataataataataatacatacctGTAAAGGAGCAACGCACACCCATCCAAGCGTGCTGCCATATTAGGTACCTTGAAATCAAAGTGTTTTAAGAACTGCAAttattctgaattaattaattacttgtgTTTAGCAATTGAGGGATCTGAAGGAAATGGATTCCGGGCCTGGCGATGTCACTACCTGCTGTTGTGAACTGTAGTCCAGTGTCATAACTTCTCTCTCCGTGAGTGAAACTACGTAACCGACTGAATTTACAGCAGCAGGACCGTGATCTTTGATGCAGGGTGATGTTATGTGAAGCTTGATCCCGTCCGTTCTAGGCTGTGCTTCTCCAAAGGGCTGAACCTAAAGGacagaatatgtatatttttatctAAGTTTGTGTTTACAGGCACTCTCCCACCACATTTATACTTGCTTCTCTACTACTATGTCTTCAGTGTCCATCACAAAAGCTTGAAACCATACATTACTGACCGCTAAAGACTCCTAACGCAAACGGGTTTGTGTATTATTCTGTGGCCGCCCCTTGCTTAGCAGATCTGGTTGTATAGTTCGGTACTTGTAAGGCCCTGTACTTTTAAAGCCCCTTAAAACTGAATGGATATCTTTGTTTCTATGGCAAGTCCTTTAgccatttattttgtgtcaaagaaaacaaaatgaggacaattgtttgtcatttttaaagctttttgagTAATGTCATGAACAAGggttcatttttgcatttaattgttttaattaggaGTTATAAAAGggaacaatacatttatttaaaacctgttttctttgctttgttaCAGAGTTTAATGTTCTTTAGTCCTCATGGTGTAGCTTCAAAACAAGTTGGCCAGCAAGCAAACCTGTGACCCTATTACCAAATGTACTGGGaccacacgcacacgcacaatGCCGCAGCTGCTTACAACATCCATgactgtggggggggggggggggggtggaatcCCTTTACCTCCAGATGGCCAGAGGAAAACTGAGACAATCCTCCCATGTCACCATTTATAACTTAGGAAAGGAAGCTGATCTCTGCCGTGTCTTCCTGGTATGCAATTCCAGTTCATCACAGAGGTATTCTGTTGGAGGGAGTTCAGCACCCTGATGTGGCCTAGTCATGCGTTTCTGTGACCCACTGCTCCGCTCTCAGTATTATAGTGTGGTGCATTTCCGTTTCGGTAGTCATGTCTGCTCGCTCGTCAGAAAATGCCATCAACGCTGTCAGTACAGTTGTGTAACATGTAGTGCCATGCGTGGTGCCCTTCCCAAGTGCAGCCCTGCATCCCAGACCTCTGTGCCAGTCTGTTAACAGTGGGTGGAGGCCTGTCCCATGACTTTTGGTATTCTGGTGTATTTAGAAGATTTGGCACTAGATTAGTCAGACCTTGTAAAGGTTTCCTGCTTCTGAGGCAAATGTAGCATGGCAAACCTCGCCAGCCTTTATACTCTGAAGCCTCGCAGTTGTTAATTTTTCCAGGTGAGGGTGGGTGTGGTTGCAgcttttgtacttttaaaaaccATCCACAAAGCCCTTATAGGAGACCCAAACCAATCCTTTTGTATCATTTACTTTGGTTTGTTCACAGATAGAGTAAGATCAAGTACAACTAAATTACCATCCAGTTTTAGAAACCATAgatcacttttgttttcttttgcattatATCCCAGTATTTGTAATACTAGCATGTCATTTGGGAGAGgaattgtatataatgtatatggtctgtattgtacattttatacagtcaATATAGAATAATGTCGCTTATGCTTTAAAGCATGaagcaaatcaaatgtatattgGCGATTTCAGATTTGTACTGTTATTCAAAGATAGCCATATTTGTTGTCCAGATCTCTGCACTCCTCTTTTGATAATTGTAACCTGATttgagggtgtttttttttttttNNNNNNNNNNtttttaatatttgttattcaTAGGCTGTTGAAATACCGTAAGCCATATGGATGTTCGTCCAGCAAAGTCATCTTGAATGCTTACACAAGTCTGGGAAATGTTGCTTTTCTTGACATTTGCATGTACAGtataaatgttttgtacttTGTGCTTTAACCGCAAGCCAGAACTGATTttcaatgtgtttaaaattTTCAATTAAGATGCACGGtttgcacattttctgtaattcaTTTGAATGTGCATATGTTGTGGTTAAAGTACACATATATGGATGTGAAaaagtaacaataaaaataaaactcca
>TU14772
aaaaaaaaaaaaaatccatacctGTAAAGGAGCAACGCACACCCATCCAAGCGTGCTGCCATATTAGGTACCTTGAAATCAAAGTGTTTTAAGAACTGCAAttattctgaattaattaattacttgtgTTTAGCAATTGAGGGATCTGAAGGAAATGGATTCCGGGCCTGGCGATGTCACTACCTGCTGTTGTGAACTGTAGTCCAGTGTCATAACTTCTCTCTCCGTGAGTGAAACTACGTAACCGACTGAATTTACAGCAGCAGGACCGTGATCTTTGATGCAGGGTGATGTTATGTGAAGCTTGATCCCGTCCGTTCTAGGCTGTGCTTCTCCAAAGGGCTGAACCTAAAGGacagaatatgtatatttttatctAAGTTTGTGTTTACAGGCACTCTCCCACCACATTTATACTTGCTTCTCTACTACTATGTCTTCAGTGTCCATCACAAAAGCTTGAAACCATACATTACTGACCGCTAAAGACTCCTAACGCAAACGGGTTTGTGTATTATTCTGTGGCCGCCCCTTGCTTAGCAGATCTGGTTGTATAGTTCGGTACTTGTAAGGCCCTGTACTTTTAAAGCCCCTTAAAACTGAATGGATATCTTTGTTTCTATGGCAAGTCCTTTAgccatttattttgtgtcaaagaaaacaaaatgaggacaattgtttgtcatttttaaagctttttgagTAATGTCATGAACAAGggttcatttttgcatttaattgttttaattaggaGTTATAAAAGggaacaatacatttatttaaaacctgttttctttgctttgttaCAGAGTTTAATGTTCTTTAGTCCTCATGGTGTAGCTTCAAAACAAGTTGGCCAGCAAGCAAACCTGTGACCCTATTACCAAATGTACTGGGaccacacgcacacgcacaatGCCGCAGCTGCTTACAACATCCATgactgtggggggggggggggggggtggaatcCCTTTACCTCCAGATGGCCAGAGGAAAACTGAGACAATCCTCCCATGTCACCATTTATAACTTAGGAAAGGAAGCTGATCTCTGCCGTGTCTTCCTGGTATGCAATTCCAGTTCATCACAGAGGTATTCTGTTGGAGGGAGTTCAGCACCCTGATGTGGCCTAGTCATGCGTTTCTGTGACCCACTGCTCCGCTCTCAGTATTATAGTGTGGTGCATTTCCGTTTCGGTAGTCATGTCTGCTCGCTCGTCAGAAAATGCCATCAACGCTGTCAGTACAGTTGTGTAACATGTAGTGCCATGCGTGGTGCCCTTCCCAAGTGCAGCCCTGCATCCCAGACCTCTGTGCCAGTCTGTTAACAGTGGGTGGAGGCCTGTCCCATGACTTTTGGTATTCTGGTGTATTTAGAAGATTTGGCACTAGATTAGTCAGACCTTGTAAAGGTTTCCTGCTTCTGAGGCAAATGTAGCATGGCAAACCTCGCCAGCCTTTATACTCTGAAGCCTCGCAGTTGTTAATTTTTCCAGGTGAGGGTGGGTGTGGTTGCAgcttttgtacttttaaaaaccATCCACAAAGCCCTTATAGGAGACCCAAACCAATCCTTTTGTATCATTTACTTTGGTTTGTTCACAGATAGAGTAAGATCAAGTACAACTAAATTACCATCCAGTTTTAGAAACCATAgatcacttttgttttcttttgcattatATCCCAGTATTTGTAATACTAGCATGTCATTTGGGAGAGgaattgtatataatgtatatggtctgtattgtacattttatacagtcaATATAGAATAATGTCGCTTATGCTTTAAAGCATGaagcaaatcaaatgtatattgGCGATTTCAGATTTGTACTGTTATTCAAAGATAGCCATATTTGTTGTCCAGATCTCTGCACTCCTCTTTTGATAATTGTAACCTGATttgagggtgtttttttttttttttttttttttaaat
>TU14773
tttttttttgtgtttttttaatatttgttattcaTAGGCTGTTGAAATACCGTAAGCCATATGGATGTTCGTCCAGCAAAGTCATCTTGAATGCTTACACAAGTCTGGGAAATGTTGCTTTTCTTGACATTTGCATGTACAGtataaatgttttgtacttTGTGCTTTAACCGCAAGCCAGAACTGATTttcaatgtgtttaaaattTTCAATTAAGATGCACGGtttgcacattttctgtaattcaTTTGAATGTGCATATGTTGTGGTTAAAGTACACATATATGGATGTGAAaaagtaacaataaaaataaaactcca

Function

symbol description
zdhhc20 Enables protein-cysteine S-palmitoyltransferase activity and zinc ion binding activity. Involved in peptidyl-L-cysteine S-palmitoylation. Located in intracellular membrane-bounded organelle and plasma membrane. Is integral component of Golgi membrane.

NR:

description
PREDICTED: probable palmitoyltransferase ZDHHC20

GO: NA

KEGG:

id description
K20028 ZDHHC2_15_20; palmitoyltransferase ZDHHC2/15/20

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016203 True 4999 mRNA 0.41 12 11890988 11904834
TU14772 False 1950 lncRNA 0.54 3 11832428 11947322
TU14773 False 321 lncRNA 0.55 2 11890988 11907969

Neighbor

gene id symbol gene type direction distance location
AMCG00016195 LOC106953351,LOC103475760,LOC103145618,LOC106922176,LOC107098229 coding downstream 102631 11719415 ~ 11729797 (-)
AMCG00016187 rhog,LOC106613190,LOC107749931,LOC107667433 coding downstream 169593 11647731 ~ 11662835 (-)
AMCG00016188 NA coding downstream 209369 11604817 ~ 11623059 (-)
AMCG00016189 LOC107685497,LOC106603565 coding downstream 241331 11583814 ~ 11591097 (-)
AMCG00016183 NA coding downstream 356636 11471726 ~ 11475792 (-)
AMCG00016208 sacs,LOC106612984 coding upstream 260826 12208148 ~ 12236522 (-)
AMCG00016210 LOC106567911,LOC102798362,LOC104951736,LOC105923239,LOC107101883 coding upstream 316952 12264274 ~ 12296060 (-)
AMCG00016209 NA coding upstream 349531 12296853 ~ 12320656 (-)
AMCG00016212 NA coding upstream 413253 12360575 ~ 12376528 (-)
AMCG00016217 dscam,LOC106612992 coding upstream 525941 12473263 ~ 12499001 (-)
G11865 NA non-coding downstream 93829 11738345 ~ 11738599 (-)
G11858 LOC106904821 non-coding downstream 115011 11701591 ~ 11717417 (-)
G11814 NA non-coding downstream 348635 11483562 ~ 11483793 (-)
G11807 NA non-coding downstream 432010 11400207 ~ 11400418 (-)
G11805 NA non-coding downstream 444303 11387731 ~ 11388125 (-)
G11996 NA non-coding upstream 291463 12238785 ~ 12239014 (-)
G12041 NA non-coding upstream 405838 12353160 ~ 12353381 (-)
G12046 NA non-coding upstream 407353 12354675 ~ 12355364 (-)
G12058 NA non-coding upstream 440476 12387798 ~ 12391408 (-)
G12096 NA non-coding upstream 691171 12638493 ~ 12638698 (-)
AMCG00016194 NA other downstream 50881 11766152 ~ 11781547 (-)
AMCG00016176 NA other downstream 984617 10834412 ~ 10847811 (-)
AMCG00016134 NA other downstream 3004668 8823545 ~ 8827760 (-)
G11326 NA other downstream 3637996 8191546 ~ 8194432 (-)
AMCG00016119 NA other downstream 3708395 8119221 ~ 8124033 (-)
AMCG00016211 NA other upstream 375839 12323161 ~ 12329033 (-)
AMCG00016226 NA other upstream 902556 12849878 ~ 12870560 (-)
AMCG00016246 prdm15,LOC108413920,LOC102786849 other upstream 1596026 13543348 ~ 13559184 (-)
AMCG00016281 NA other upstream 2473034 14420356 ~ 14427290 (-)
AMCG00016293 NA other upstream 2837876 14785198 ~ 14791969 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000018_06493607_06502730 ZDHHC20 coding CI01000018 null 6493345 ~ 6502730 (-)